Spg030557 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030557
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold6: 32478245 .. 32484703 (-)
RNA-Seq ExpressionSpg030557
SyntenySpg030557
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTAAACCCGAGACTTCTCTAGGATCATTTTCTCTTGTGATCTATTGTGGAAGTTGAACTAAAAGTTGTTGTTATTCATTGTCTAGGAAAAATGGCAAAGTTTTGTGGTTCTTTGTGGTTCATTGTTGGTTGAAGTTGTTGGGATTACTAAGTTAAAAGAAGGAAGGAAAAAAAGAAAAGGAAAAGGAAAAGGAAAATGGAAGGAAAAGAAAAAAAAAATAAATCAGCAAAAAAAAAAAAAAACCCACCACCGCTTCACCCTTTTTTTAGTCCATTTTCCCATCATTTCCCATCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAATAAGATAGGAAAAGCTCATGCAAAGCCAACTACAGCAGAATCTGGGTTCAACTTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATTTTCTTGAAGGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTCTTTTGAGCATTCTGGGGTGTAAAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCTTATTCAATTTCCTACAACTTTCATCAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTATGTTCCGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGTACGTTGTAGAGTGTTTGAAAATGAAGAGTTTGATGTATAGTACATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTCGAAGGTGTGGTATTGAATCTGGAAAATCTGGAAAGTAGAATGTGGAGTGAGATTTCTTATTCAAGAGTTTAGAATTCATGAGCATGGAAAGACAAAGCTAATTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGAAAATAGGTCAGGTCTACAAACTAGGGAACTAGCTAAGACTCTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACAGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATGAGTGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCCAAACATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTCTTCCACGAGCAAGCTGAGTAAGCTTGAGTTTTATGAAAGATAACGATAAGCAGGCATGTTTAAACGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACAAAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATTGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAGCGTAGATCAATCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGATGAACCTACGATGTTTTAAGAAAGTTTTTATCGTTGCACGTTTATGTTTAACGCCTTGGTTGAGCAGCTTTATGGGTTTAAAGTTTTATCACGTTTTCTGATTTCCGAATCTACAGTTTTAAATTTACTCACTCATTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCCACTTTTTAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTGCGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGGCCTAGAGGTCGTGGTTGTATAAACCCGAGTTGTACATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCGACACCTCGTGTATGTTGAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTCCACGTAGAATATCTTAAATTTAAGATTAGTATGTTTATCAGGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCAAAACTAGCAGGTGGTCCGGAAGGGGGTGTGACATTTCTTTTAATCTTTGGAACTACGTACACATTATCTAATAATATGTACTTTTTTTCTTGGAAAGATAATTTTATGCTTCCTACTACTATAGCTGAGACGACTTCTCCAGTTCCAACTCTGAGAGTCATTTGTCCAGCTCCAAGCTGTTCCCAGGAACTCATTCCTTTAAACGAAGAACAAACGTGGTTTGTGGCCCCTGAATCAAGTATCCAGGCAGAACTATCGTTCTCCACTAAGCACGTTTCCAAGACTAGTAAGTCTTTGGTAGCGTTCTCGTAAGCTAAGCCGTTTGGTCGAGGACGTTCCTCATTTAAGACCAATAAATCGTTTGCCACTTTTTCAGTGTTTATACGCATATTCTTAGTACAATGTTCTAAACCGTTTAATTTGACGTCAGACAAAGCACATACGTTTTTCGACATATTGCTGAAACAAACAAATAACTTGTATTAATAATGTTCCACTAAACCCATTATACATATCCAATCAATTTAGCAAAAGTAATTAAGCACCCTATTAGAAACGTTGATCTTAGGTCTATTTAATTTTAAATCGTTTAAAATTATGTCATGATCCTAAGATCCTATGTTAGCATGCAACTATTTGTTATAGGTTGAACGGTTTCTATTCATTAACTTTTATAAATCTTATAACTTTTAATGAATTAGCCCTATAACATGCTTTCTAATGGTGATTTAAAGCATATAACAATCAAACATTCAAGTTATATAAAGCACCATTTAGAAACATCCTATGTCTAGGTGTGTATAACTCTTTATACTACGATGTCTAGGTGATAACTCTTTAAAACCTCACATCGCTCACGCATGCTCATAAAACTTGGGTTAACCTAACTCAAGTACCGATTCGATGCCCAGGTAGGAGGTGTTTCGTAAACCGTCAACTTAAATACCTCCAGCCTTAGTCAGCATCTTACCGGGTGAGTTCTCTTGTAACCTTAGCTTTACAAGATATCGACCTAATCTATGCAAGTTGATCAATTTGGAGGTTCGTTAACCTAAGTGAGCATGTATTTATCTTGTTATAGATTTTAAGTCTATCTCGGTTTATAACGCTTATAACGAACGAAAAATCCATAACTAGCTTTATTAGAATATAACCATTATAAACAAGCTAAGGAAGTTTCATGCTGCATGCTTGGTTCATTTTCATTTTATTAATATAACATTTATATTAACTAATCATAAATGAAATTAAACCATCCAACATGCATCTCCTAAATTAATATAACTATTATACTAATTTCATGAAACTTTATTCATGTATTCAATTTATATCATAACTCTTATAACATATTAATTAATGCATGATTCATGCTTTCCTATGGTGGGATTTTAAATCTAAATGGCATACATTATGCACATAAAATACTATTTAATTAAAACATACATTCAATAATGCATAATTAATTAAATTAACTAAAGTGAATTGGTTTTGGGATTTTTAATCAAGCAAAAACAAAAACTAAAATTATTACAATAATAATTTCAAATAGGGCTTAGACCGCTCCCGAACCATTCGAACCGACCCGAACCGCCCTTGGATTGTTTGAACCGGAGCATTTTGCCTTTAAGTGAAGAACATACTTGGGCTGGAACTAAAAAACAGCATGATGGAATTTTCGGCTAGTAGCGAACAGTCTCCGAATTTCTTCAAATTGACGACCTAAATGGACTCTATTGACTCTCAAATTTTACAGACTCCATATGTACAAATTAATGCCCATAAACATGTAGGAAATTACAATTAATTCAAACGAATTGAACGAGAATTAAATTCAATCCCAAAACCAATTTTCTTTAGTTTTTACACAGTTTCATCATATGAAAAGCTACCCACCAAGCTAAAATTAATGCATGTTAGGTGCCATAATCATACTCTGATACCAATTGAAGGTGTTCACATAACACATACAGAATCAATTTTAGGATCGGAGGCACTTAACTACATCAATTTTAGAAAATGAAAACATGCTGCCCAAATACCGTAAATAGAGATAAGAATTTGTACCAACCTTTTTGGAGACCGATTCAACGACTCCCTTTGATTCCTTTGATCACGAACAGTGTGTGGACCATCACTAGTGTCTTCCCTACTATTCTCCGGGCCAAGAACGACTTGTGGGAGTCTATAGAGATAGGGAATGCTTGAAGGTTCAAGCACTAGAGAGAAATATGGAGATGAGTGAGTTTGAGACCAAAATCCAGAAGCATAACAATATGGAAATAGCTCTCTAAACTCTTAATCTGATTTTGCATCTACTTATAGAGATATTCCATGCAAGGAAAGGCCTCAAGATGCAAGACACGTGGTGGTAATGCAAGCCAAAGTGGATTCTAGGTGTTGAAGTCACAACACATGCAACAAGTGCATGGATGTGTCGTATTCCACTTTGTATCAACATGCAAGAGTGGAAATCCATCTAAATCCACTAAGTTTGATCCTCAATCAGATTTTGCTTGCATTCTAATTCAAATTCCAATTCTAAATTGAAATTGATTTCATGGCAATTAATTAGAAACATTTCCAATTAATTTGTTATGATTAATCCAATTAATCATTGACACCTCGTGCAATCTAATTATATATGATTCCTAATTCATATATAGTATTTAAAACACTTTTAAATACATAATCTCTCATTTTCCAATTTAATTCATAATTAAATATTGTGTCAAACACAATTTACGAAAATGCCCTTTTTCCCGATTTTGAACAATTCAAAGAATCCTATCTTATATTTCTTGGCTTTATTCTGATATGAGCTAGTAGGGGGACCTAATGGACCTATAGATCATGGGCTCTAGCGATTCGAGGCTAACCGACTTAATCTCATTAACCAAGCTTAACCAACATTCGTTAACTACCGGGGCACTCCACTATAGCCCAGTAGTTGCACTCCCCTCACTATAGATATATTTCCGTCCACTTGATTTAACCATGTTCAGTAAGTCGATCCTTCACAGGTTGTTTGTAGCTATAACTAGGTTAAATGACCGTTTTACCCTCATAGTACTTCTAGTTCCTTAAGTCCCACTGATACTCTAATAAACAATCGGTTTATGGTCCAACCAATAAACCGAGTCCCTCTCGGGTCAATGAGAGGGCAGGATCCCTTTGTCCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTTGGGTAGGAGTGAATTCCTTCTCACACAACTATGTCCCCAGCTATCTACCCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGTCGGCGATACTGAGCCACTCTCACCTATGCAGATCTAAGGATAAGCCCGAATAAACAGGACTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCACCTGAAATAATCAGTCTCGTCAGTAAATGGTGTTATAAAGCGAGAGTGACTTATTTCTCGGTCCTGGTCTTATGCAAACTCATTGCATATGACGCCTTCATTCGCATGTCTCTACATGGACGGTTTAAGATCACATCGTCTATAGACCGTTTTGGCTATTACTCGAGGTTGATCCACTTTTATGTCTCTACATAAAGCTCAAGTGTTCATCCTATAGCTAGGGATCTTAGTTTATTGAATTTGGGTTATTTAACGTGCAATTTACTTATTCAGTAACGACTTTACTGTATGAATCTCGACAACGACTTTATCGATCAAGTATATAATTCGTTTAACATTCACTATCTACGAGTTTTAGGGCACCAATCCCAACAGTAATCTCTCTCATCATAATCTTAGCTTGCTCGAGGACTAGCAAGGTCTAGGTTGAGGGTATTTGATCGGTCTAATTTATTATACACTTAGAATCTCCCAATTTGCTTATCTTAGTTGAATTCCTTGCGAAAAATGCTTTAAAATGAGTATAATATGTGTATAGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTAAAACGAGCCAAAATCGGAGCGTAAAATGACCATTTTGCCTTTAAGGCCTCATCAGCGTCGGGATGCCCATCATCGGAGTCAAGATGCTAACCAAATAAGGAAACTACTTGGGGATCAAGCTGGCGAACAGTGTCGCGATGCTAGGGCAATCCGACAGCAATGTTCCGTATCTGAAGGGACAGCGTCGCGACGCTAG

mRNA sequence

ATGTTCCGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGCCAAGAGAAAATAGGTCAGCCCGAGGCTATATGGTACCGTGTGCACAAAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATTGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAGCGTAGATCAATCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTGCGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTAGATATTCCATGCAAGGAAAGGCCTCAAGATGCAAGACACGTGGTGGTAATGCAAGCCAAAGTGGATTCTAGGCCTCATCAGCGTCGGGATGCCCATCATCGGAGTCAAGATGCTAACCAAATAAGGAAACTACTTGGGGATCAAGCTGGCGAACAGTGTCGCGATGCTAGGGCAATCCGACAGCAATGTTCCGTATCTGAAGGGACAGCGTCGCGACGCTAG

Coding sequence (CDS)

ATGTTCCGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGCCAAGAGAAAATAGGTCAGCCCGAGGCTATATGGTACCGTGTGCACAAAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATTGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAGCGTAGATCAATCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTGCGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTAGATATTCCATGCAAGGAAAGGCCTCAAGATGCAAGACACGTGGTGGTAATGCAAGCCAAAGTGGATTCTAGGCCTCATCAGCGTCGGGATGCCCATCATCGGAGTCAAGATGCTAACCAAATAAGGAAACTACTTGGGGATCAAGCTGGCGAACAGTGTCGCGATGCTAGGGCAATCCGACAGCAATGTTCCGTATCTGAAGGGACAGCGTCGCGACGCTAG

Protein sequence

MFRAFLDKLVENLVFISSGQEKIGQPEAIWYRVHKGYIPLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPTQRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHIVNVLDIPCKERPQDARHVVVMQAKVDSRPHQRRDAHHRSQDANQIRKLLGDQAGEQCRDARAIRQQCSVSEGTASRR
Homology
[Close]
BLAST of Spg030557 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-16
Identity = 56/87 (64.37%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 40  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----- 99
           L TLSVL DNDAVVSAG            RAPLH RTSKRWLYWACPT RRS+ML     
Sbjct: 540 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 599

Query: 100 -----VEIELPVPDTLPASAESSRSSS 105
                VEIEL VPDTLP SAESS S+S
Sbjct: 600 VLVMPVEIELSVPDTLPTSAESSESNS 626

[Close]
BLAST of Spg030557 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-16
Identity = 56/87 (64.37%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 40  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----- 99
           L TLSVL DNDAVVSAG            RAPLH RTSKRWLYWACPT RRS+ML     
Sbjct: 126 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 185

Query: 100 -----VEIELPVPDTLPASAESSRSSS 105
                VEIEL VPDTLP SAESS S+S
Sbjct: 186 VLVMPVEIELSVPDTLPTSAESSESNS 212

[Close]
BLAST of Spg030557 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 0 

Query: 39  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLP 98
           PL TLSVL DNDAVVSAG+APL     +RW     PT    +  S  LVEIELPVPD LP
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLR---QRRWECRTGPTTSFFKMFSTFLVEIELPVPDILP 161

Query: 99  ASAESSRSSSSAWVELYIESVHI 118
            SAESSRS+SS W+ELY ESVH+
Sbjct: 162 TSAESSRSNSSTWLELYFESVHV 181

[Close]
BLAST of Spg030557 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 0 

Query: 39  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLP 98
           PL TLSVL DNDAVVSAG+APL     +RW     PT    +  S  LVEIELPVPD LP
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLR---QRRWECRTGPTTSFFKMFSTFLVEIELPVPDILP 161

Query: 99  ASAESSRSSSSAWVELYIESVHI 118
            SAESSRS+SS W+ELY ESVH+
Sbjct: 162 TSAESSRSNSSTWLELYFESVHV 181

[Close]
BLAST of Spg030557 vs. NCBI nr
Match: TYK02787.1 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 31  YRVHKGYIPLLTLSVLHDNDAVV------------SAGRAPLHCRTSKRWLYWACPTQRR 85
           YRVH  YI LLTLSVL DN+ ++            SAGR PLH RTSKRWLYWAC TQR 
Sbjct: 749 YRVHTSYISLLTLSVLRDNNVIMSVERVPLVKDDGSAGRTPLHRRTSKRWLYWACSTQRN 808

[Close]
BLAST of Spg030557 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.2e-17
Identity = 56/87 (64.37%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 40  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----- 99
           L TLSVL DNDAVVSAG            RAPLH RTSKRWLYWACPT RRS+ML     
Sbjct: 540 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 599

Query: 100 -----VEIELPVPDTLPASAESSRSSS 105
                VEIEL VPDTLP SAESS S+S
Sbjct: 600 VLVMPVEIELSVPDTLPTSAESSESNS 626

[Close]
BLAST of Spg030557 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.2e-17
Identity = 56/87 (64.37%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 40  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----- 99
           L TLSVL DNDAVVSAG            RAPLH RTSKRWLYWACPT RRS+ML     
Sbjct: 126 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 185

Query: 100 -----VEIELPVPDTLPASAESSRSSS 105
                VEIEL VPDTLP SAESS S+S
Sbjct: 186 VLVMPVEIELSVPDTLPTSAESSESNS 212

[Close]
BLAST of Spg030557 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-16
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 0 

Query: 39  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLP 98
           PL TLSVL DNDAVVSAG+APL     +RW     PT    +  S  LVEIELPVPD LP
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLR---QRRWECRTGPTTSFFKMFSTFLVEIELPVPDILP 161

Query: 99  ASAESSRSSSSAWVELYIESVHI 118
            SAESSRS+SS W+ELY ESVH+
Sbjct: 162 TSAESSRSNSSTWLELYFESVHV 181

[Close]
BLAST of Spg030557 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-16
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 0 

Query: 39  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLP 98
           PL TLSVL DNDAVVSAG+APL     +RW     PT    +  S  LVEIELPVPD LP
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLR---QRRWECRTGPTTSFFKMFSTFLVEIELPVPDILP 161

Query: 99  ASAESSRSSSSAWVELYIESVHI 118
            SAESSRS+SS W+ELY ESVH+
Sbjct: 162 TSAESSRSNSSTWLELYFESVHV 181

[Close]
BLAST of Spg030557 vs. ExPASy TrEMBL
Match: A0A5D3BTJ5 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00460 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.6e-12
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 31  YRVHKGYIPLLTLSVLHDNDAVV------------SAGRAPLHCRTSKRWLYWACPTQRR 85
           YRVH  YI LLTLSVL DN+ ++            SAGR PLH RTSKRWLYWAC TQR 
Sbjct: 749 YRVHTSYISLLTLSVLRDNNVIMSVERVPLVKDDGSAGRTPLHRRTSKRWLYWACSTQRN 808

The following BLAST results are available for this feature:
BLAST of Spg030557 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065516.11.1e-1664.37uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
TYJ98800.11.1e-1664.37uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
KAA0037581.11.2e-1563.86reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.11.2e-1563.86reverse transcriptase [Cucumis melo var. makuwa][more]
TYK02787.11.8e-1159.09RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c... [more]
BLAST of Spg030557 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg030557 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VGQ55.2e-1764.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BG855.2e-1764.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BTP35.7e-1663.86Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M65.7e-1663.86Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5D3BTJ58.6e-1259.09RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c... [more]
BLAST of Spg030557 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030557.1Spg030557.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016740 transferase activity