Spg030526 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030526
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold6: 34209209 .. 34210728 (+)
RNA-Seq ExpressionSpg030526
SyntenySpg030526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACGAAAACCCAAGGAAGGGGACAACAAAAACTCAGAAGGAGAAAGGATCAAAGCAATCGAATGGTTCCTCAAATAGGACAACTGATATAAATGGGGAAATAAAGAGTAATGGGGTCTATCCTCCCAGAAGTAGGTATCCCTCCCATCATCCACCACACAGTGGATAAGCTAGGAAAGAAAAGGAAACTCAGCAGCGATCCCTTTTCATGGGTCTTGTTAAAAGAATGGTTGATGGGAGAGCTTAGGGGGTCTGTCAAATACCCACCTTCAATCTTATAAAAAAAATATATCCAAACAAATATACAATCAACACCCAATGGAAAGAAATTTCCATGCTGGCTAAATGGTTATTGCGCTTTTATTTCAATTCCAACACCCTATGATATAGGATTATTGTTAGCAAATACGACCCTCATCCTCATGAATGGGTGACGGGGGATCAAAAGCACTCCTAGAAACCCTTAGAAAGAAATTTCCCATGAGCTCCCTTCTTTGACCTCTTTTGTTCGTTGTTCAGTGGGGAATGAGGATGATACTTATTTTTGGGAAGATAGGTGGGTGGGAGAGCGATCCCTTTGTGTTACCTTTCCTCGGCTCTATCATTTATCTTCCATGAAAAATCAGTCCGTAGTCAAGGTCTTAAATCCTTCTGGGAGCTCTCTTTCCTATTCTTTTGGTTTTAAGCGCCCGTTGTCTGATCGAGAAACTTTCGACCTTTTGACTCTCCTGTCCTTGATTGGGGAGATCACTTTTAGCGCTTCTAGGAGGATGTTCGGTTGTGGAGTCCTGAACCCTCTCTTGGTTTCTCTTGTTGGTCTTTCTTCCAATGCTTATTAGACCCCTCTCCTACTCATGTGTCAATTTTCTCTTTGTTATGGAAGGTGAAAGTCCCAAAAAAGGTGCAGTTTTTTATTTGGCAGGTAATCCATGGAAGAGTTAACACCCTTGATTGGCTCTCCAGAAAGATTCCCTGTTTGATTGGGCCCTTTTGCTGCATTCTCTATCAGATGGCAGAGGAAGACCTTGACCATATTTTGTGGAGCTGCGATTTTGCTACGGCTGTCTGGGACGAGTTCTTTGGCTTGTTGATGTAGCCGTATACTTGTAATAACTCTTATTCTTTTATTTTACTAAGTCATGTGCCAACCACATGCCTTGTAACTACTTTAGTTAGGATCCTTGCCTATTTAAGGGCAAGTGATTATCAATAAAGAGGTATCATTTGTTATTATTCTAAAACAAGTCTACGGCTCCACCATATTTGGTATAAAAGCGTGTGATTTTGGGCGTTTCCTCGATGGCATCCAAGAAGGTCTCAACCAGTGTGGGTGGAGACTCAACATCGATGGGCAAAGAGGCGGAGACTATCACCGTCCTCTCACCACAAGAAACGACTGCACGCTTGCTGTCAGTCGAAGATGACGTGCGTGAGATTAAAAAAAATCTTAGGGATGATATGCGAAAGAATGGGCTGCAAGATTGGACAGCAAGCCTCGAAATTTCAAGAACATGA

mRNA sequence

ATGAATGACGAAAACCCAAGGAAGGGGACAACAAAAACTCAGAAGGAGAAAGGATCAAAGCAATCGAATGGTTCCTCAAATAGGACAACTGATATAAATGGGGAAATAAAGAGTAATGGGGTCTATCCTCCCAGAATGGGGAATGAGGATGATACTTATTTTTGGGAAGATAGGTGGGTGGGAGAGCGATCCCTTTGTGTTACCTTTCCTCGGCTCTATCATTTATCTTCCATGAAAAATCAGTCCGTAGTCAAGGTCTTAAATCCTTCTGGGAGCTCTCTTTCCTATTCTTTTGGTTTTAAGCGCCCGTTGTCTGATCGAGAAACTTTCGACCTTTTGACTCTCCTGTCCTTGATTGGGGAGATCACTTTTAGCGCTTCTAGGAGGATGTTCGGTTGTGGAGTCCTGAACCCTCTCTTGGTTTCTCTTCGTGTGATTTTGGGCGTTTCCTCGATGGCATCCAAGAAGGTCTCAACCAGTGTGGGTGGAGACTCAACATCGATGGGCAAAGAGGCGGAGACTATCACCGTCCTCTCACCACAAGAAACGACTGCACGCTTGCTGTCAGTCGAAGATGACGTGCGTGAGATTAAAAAAAATCTTAGGGATGATATGCGAAAGAATGGGCTGCAAGATTGGACAGCAAGCCTCGAAATTTCAAGAACATGA

Coding sequence (CDS)

ATGAATGACGAAAACCCAAGGAAGGGGACAACAAAAACTCAGAAGGAGAAAGGATCAAAGCAATCGAATGGTTCCTCAAATAGGACAACTGATATAAATGGGGAAATAAAGAGTAATGGGGTCTATCCTCCCAGAATGGGGAATGAGGATGATACTTATTTTTGGGAAGATAGGTGGGTGGGAGAGCGATCCCTTTGTGTTACCTTTCCTCGGCTCTATCATTTATCTTCCATGAAAAATCAGTCCGTAGTCAAGGTCTTAAATCCTTCTGGGAGCTCTCTTTCCTATTCTTTTGGTTTTAAGCGCCCGTTGTCTGATCGAGAAACTTTCGACCTTTTGACTCTCCTGTCCTTGATTGGGGAGATCACTTTTAGCGCTTCTAGGAGGATGTTCGGTTGTGGAGTCCTGAACCCTCTCTTGGTTTCTCTTCGTGTGATTTTGGGCGTTTCCTCGATGGCATCCAAGAAGGTCTCAACCAGTGTGGGTGGAGACTCAACATCGATGGGCAAAGAGGCGGAGACTATCACCGTCCTCTCACCACAAGAAACGACTGCACGCTTGCTGTCAGTCGAAGATGACGTGCGTGAGATTAAAAAAAATCTTAGGGATGATATGCGAAAGAATGGGCTGCAAGATTGGACAGCAAGCCTCGAAATTTCAAGAACATGA

Protein sequence

MNDENPRKGTTKTQKEKGSKQSNGSSNRTTDINGEIKSNGVYPPRMGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLSDRETFDLLTLLSLIGEITFSASRRMFGCGVLNPLLVSLRVILGVSSMASKKVSTSVGGDSTSMGKEAETITVLSPQETTARLLSVEDDVREIKKNLRDDMRKNGLQDWTASLEISRT
Homology
BLAST of Spg030526 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-09
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 61  GERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLSDRETFDLLTLLSLIG 120
           GER LC  FP LYHLSS+KN  +   L  +G+S S+SFGF+R LSDRET +++ L+SL+ 
Sbjct: 136 GERPLCGLFPCLYHLSSLKNHFMADFLVWNGNSCSFSFGFRRALSDRETSNVVALISLLE 195

Query: 121 EITFSASRR 130
             +F   RR
Sbjct: 196 SHSFRLGRR 204

BLAST of Spg030526 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-09
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 46  MGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLS 105
           +G+  + YFWED W+G + L + FPR+Y LS  K  SV +VLN      S S G  R L+
Sbjct: 302 VGDGLNAYFWEDTWLGNKPLSLAFPRIYFLSEKKLLSVAEVLNFGEEDSSISLGLSRSLT 361

Query: 106 DRETFDLLTLLSLIGEITFSASRRMFGCGVLNPL 140
           D E+ ++  LL L+  ++ S+ R      + NPL
Sbjct: 362 DPESLEIAALLDLLPSVSCSSGREDVRVWIPNPL 395

BLAST of Spg030526 vs. NCBI nr
Match: XP_026410707.1 (uncharacterized protein LOC113305930 [Papaver somniferum])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-07
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 46  MGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLS 105
           +GN +  YFW D WVGE+SL V FP L+HLS  KN  +  +++  G   ++   F R L+
Sbjct: 222 VGNGNSIYFWNDVWVGEQSLAVLFPTLFHLSKKKNAVIKDLISSEG---AWDLNFARSLN 281

Query: 106 DRETFDLLTLLSLIGE 122
           + E  +++ LL++IG+
Sbjct: 282 ENEMLEVVNLLAVIGD 294

BLAST of Spg030526 vs. NCBI nr
Match: VVA30963.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-07
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 46  MGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLS 105
           +GN +   FWED W+ E  L   FPRL  LS  KNQS+ +  N     L++ F F+R LS
Sbjct: 253 VGNGEKIRFWEDLWLKEGILKDLFPRLSSLSRRKNQSIARFANNHEMPLNWDFDFRRNLS 312

Query: 106 DRETFDLLTLLSLIGEITFSASR 129
           + E  +++ LL ++G +    SR
Sbjct: 313 EAEIAEVVILLDILGNVRLYGSR 335

BLAST of Spg030526 vs. NCBI nr
Match: OVA03191.1 (hypothetical protein BVC80_457g1 [Macleaya cordata])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-06
Identity = 33/87 (37.93%), Postives = 41/87 (47.13%), Query Frame = 0

Query: 46  MGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLS 105
           MGN  +  FWED W+G   LC  FP LY  SS K  SV    N  G +L ++ G  R L 
Sbjct: 10  MGNGSEVRFWEDHWLGGEPLCNRFPALYRFSSSKGSSVQNSCNNEGGNLVWNLGITRRLG 69

Query: 106 DRETFDLLTLLSLIGEITFSASRRMFG 133
           D E  +  TL+  +     S     FG
Sbjct: 70  DVEIEEFTTLIVELQNFIMSDELDRFG 96

BLAST of Spg030526 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 61  GERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLSDRETFDLLTLLSLIG 120
           GER LC  FP LYHLSS+KN  +   L  +G+S S+SFGF+R LSDRET +++ L+SL+ 
Sbjct: 136 GERPLCGLFPCLYHLSSLKNHFMADFLVWNGNSCSFSFGFRRALSDRETSNVVALISLLE 195

Query: 121 EITFSASRR 130
             +F   RR
Sbjct: 196 SHSFRLGRR 204

BLAST of Spg030526 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 46  MGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLS 105
           +G+  + YFWED W+G + L + FPR+Y LS  K  SV +VLN      S S G  R L+
Sbjct: 302 VGDGLNAYFWEDTWLGNKPLSLAFPRIYFLSEKKLLSVAEVLNFGEEDSSISLGLSRSLT 361

Query: 106 DRETFDLLTLLSLIGEITFSASRRMFGCGVLNPL 140
           D E+ ++  LL L+  ++ S+ R      + NPL
Sbjct: 362 DPESLEIAALLDLLPSVSCSSGREDVRVWIPNPL 395

BLAST of Spg030526 vs. ExPASy TrEMBL
Match: A0A5E4FU33 (zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035216 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 46  MGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLS 105
           +GN +   FWED W+ E  L   FPRL  LS  KNQS+ +  N     L++ F F+R LS
Sbjct: 253 VGNGEKIRFWEDLWLKEGILKDLFPRLSSLSRRKNQSIARFANNHEMPLNWDFDFRRNLS 312

Query: 106 DRETFDLLTLLSLIGEITFSASR 129
           + E  +++ LL ++G +    SR
Sbjct: 313 EAEIAEVVILLDILGNVRLYGSR 335

BLAST of Spg030526 vs. ExPASy TrEMBL
Match: A0A200PYB7 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_457g1 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 33/87 (37.93%), Postives = 41/87 (47.13%), Query Frame = 0

Query: 46  MGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLS 105
           MGN  +  FWED W+G   LC  FP LY  SS K  SV    N  G +L ++ G  R L 
Sbjct: 10  MGNGSEVRFWEDHWLGGEPLCNRFPALYRFSSSKGSSVQNSCNNEGGNLVWNLGITRRLG 69

Query: 106 DRETFDLLTLLSLIGEITFSASRRMFG 133
           D E  +  TL+  +     S     FG
Sbjct: 70  DVEIEEFTTLIVELQNFIMSDELDRFG 96

BLAST of Spg030526 vs. ExPASy TrEMBL
Match: A0A438DVI5 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_922 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-07
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 46  MGNEDDTYFWEDRWVGERSLCVTFPRLYHLSSMKNQSVVKVLNPSGSSLSYSFGFKRPLS 105
           +GN +   FWED W G ++LC  F  LY + SMKN +V  VL  S   LS++F F+R L+
Sbjct: 251 VGNGERIRFWEDLWWGNQTLCSQFANLYRVISMKNLTVSNVLGNS-LPLSWNFNFRRNLT 310

Query: 106 DRETFDLLTLLSLIGEITFSAS 128
           D E   L  L+S +  + FS S
Sbjct: 311 DSEIDLLQRLMSSLNSVLFSPS 331

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK09969.13.2e-0952.17calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa][more]
XP_022151711.13.2e-0938.30uncharacterized protein LOC111019624 [Momordica charantia][more]
XP_026410707.11.0e-0739.47uncharacterized protein LOC113305930 [Papaver somniferum][more]
VVA30963.18.8e-0738.55Hypothetical predicted protein, partial [Prunus dulcis][more]
OVA03191.11.2e-0637.93hypothetical protein BVC80_457g1 [Macleaya cordata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CI741.6e-0952.17Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A6J1DFI21.6e-0938.30uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5E4FU334.3e-0738.55zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2... [more]
A0A200PYB75.6e-0737.93Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_457g1 PE=4 SV=1[more]
A0A438DVI57.3e-0742.68Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_922 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030526.1Spg030526.1mRNA