Spg030479 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030479
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold6: 31998854 .. 32001018 (+)
RNA-Seq Expression	Spg030479
Synteny	Spg030479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGAGGTTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATGTCAAAAAGAAGCCACAATGAAGGGATCCTAAGAAAAATATGATTCCATTGAAGACGAGAATGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGGAAAAAAGAAGACAAGGAGGTCAAAGCCCGTCGTGGAGGAAACTGAAGATTTCTTTTGCCCTCCACAACCTATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGACGATGTTCCTGCTAGTTCCTCGGGAACGGTGGCAGATCCAGGAGACTTATCCTACTTCAGCATAAAGGGCTTATTGTCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTGATGCATTGATGGGGTCTGGTGGAACAAACATCTCAACCTCTGAGGCACGCACACGTGCTTCATGTTGCATGTCTATCAGATTTCCTGATGAAGATTTGCTATTAGGGTCAAAGCCTCACATTAGACCTTTTATTCGTCTCAGAATATATTCGAGAACAGAGGGTTAGTCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTTGATGGAGGAACTATGAAACAGTAAATTAGTGATCCAAGGTTTCAATCAAGGTGGACAACGGGCGATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTAATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGCAGTCATAACCTCTACATTGCACCAATTCTTTAAATTCTATGAAGATGGCATCAAGAAAGTTGAAGCTGACACTAACCCATTTTCAAAGCTGAGTCTCATTTCGCTGATGCAAAATTTTATCTGAAGAATAAAAACACAGGGTAAACCGTGCCTGCAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGATTTAGAGCCCCAAGCAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACTTCCGGCCTGAAAAAGGGTGAAGTGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAAAAATGTTCAAGTTCACCTATCCTACGATACGTCCCTTTATCTCGACGTAAAAAAGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGACGTTGAAATTCTAAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCTGAGAATGATCAGATAAAAATAATTTTGCCTGAAAAACGGACTAAAGAAGGGTTCGACCCCAAGGCTTACAAGCTTCTAGCGAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTATAAAGGTTTTTTTATGAAAGATCTGAGCTCTCTGCAACACAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCTTCAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGACGGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACAAACTTCTGTTTTTAGGGGCATCAGGCCACCAGTTGCTCGTGTTTTAGTCTTTCAGAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCGCACAAACTAACAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAATATGCCCATTGGGGAAGAAGAGAGTACATTTCCAACTCTGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATCGGGGAAGAAAAGAATACATTTTCAACTCTGAATGTGACTTGACCATAAGTTTTCAAAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTTGTCGATTTCTCACCGACTTCGATACGAAGATGCGATGAGAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTAA

mRNA sequence

ATGAAGAGAGACGAGAATGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGGAAAAAAGAAGACAAGGAGGTCAAAGCCCGTCGTGGAGGAAACTGAAGATTTCTTTTGCCCTCCACAACCTATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGACGATGTTCCTGCTAGTTCCTCGGGAACGGTGGCAGATCCAGGAGACTTATCCTACTTCAGCATAAAGGGCTTATTGTCACTTCCTCAGGAAGCTAAAAGCGGTGAAGTGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAAAAATGTTCAAGTTCACCTATCCTACGATACGTCCCTTTATCTCGACGTAAAAAAGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCTTCAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGACGGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACAAACTTCTGTTTTTAGGGGCATCAGGCCACCAGTTGCTCGTGTTTTAGTCTTTCAGAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCGCACAAACTAACAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAATATGCCCATTGGGGAAGAAGAGAGTACATTTCCAACTCTGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTTGTCGATTTCTCACCGACTTCGATACGAAGATGCGATGAGAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTAA

Coding sequence (CDS)

ATGAAGAGAGACGAGAATGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGGAAAAAAGAAGACAAGGAGGTCAAAGCCCGTCGTGGAGGAAACTGAAGATTTCTTTTGCCCTCCACAACCTATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGACGATGTTCCTGCTAGTTCCTCGGGAACGGTGGCAGATCCAGGAGACTTATCCTACTTCAGCATAAAGGGCTTATTGTCACTTCCTCAGGAAGCTAAAAGCGGTGAAGTGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAAAAATGTTCAAGTTCACCTATCCTACGATACGTCCCTTTATCTCGACGTAAAAAAGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCTTCAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGACGGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACAAACTTCTGTTTTTAGGGGCATCAGGCCACCAGTTGCTCGTGTTTTAGTCTTTCAGAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCGCACAAACTAACAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAATATGCCCATTGGGGAAGAAGAGAGTACATTTCCAACTCTGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTTGTCGATTTCTCACCGACTTCGATACGAAGATGCGATGAGAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTAA

Protein sequence

MKRDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKGKKKTRRSKPVVEETEDFFCPPQPITLAEYFPRRFLDDSQREALETVTCHIVDVVEDDDVPASSSGTVADPGDLSYFSIKGLLSLPQEAKSGEVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSALSISHRLRYEDAMRNEKITKADGEIRSAVP

Homology

[Close]

BLAST of Spg030479 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 3.1e-38
Identity = 100/212 (47.17%), Postives = 134/212 (63.21%), Query Frame = 0


Query: 132 AKSGEVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK---------- 191
           ++ GE STS  K  ++ DEK S+  ILRYVPLSRR+KGESPF +  + +K          
Sbjct: 69  SRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLS 128

Query: 192 ---KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQ 251
              KKLL+EG+ +P +RKG GYKSPEP+ IIR+ K KV D+NHITV EVD  +EKE   Q
Sbjct: 129 LIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQ 188

Query: 252 QTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTL 311
           + S F  IRP V R  VF+RLSV + E +  Q+ +S  + S  +RL M   +E+ T   L
Sbjct: 189 RISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLTMTFKKEKCTCQAL 248

Query: 312 DVTRPSAFQRLSVTTRRDKKEQSALSISHRLR 331
             TRPSAF+RLSV  ++D  +   + I +R+R
Sbjct: 249 RATRPSAFERLSVAKQKD-AQTPRVPIFNRIR 279

[Close]

BLAST of Spg030479 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 6.9e-38
Identity = 100/230 (43.48%), Postives = 133/230 (57.83%), Query Frame = 0


Query: 136 EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------- 195
           E ST+  K  ++ DEK S+ PILRYVPLSRRKKGESPF E  + +K              
Sbjct: 205 EASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKRRTKDGFDPKAYKL 264

Query: 196 -----------------------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRG 255
                                        KKLL+EG+ +P +RKGLGYKSPEP+RI R+G
Sbjct: 265 MAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKG 324

Query: 256 KAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTN 315
           K KV D NHITV+EVD  +EKE  +Q+TS F  I P VAR  VF+RLS+ EA+ +  Q+ 
Sbjct: 325 KKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQST 384

Query: 316 NSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSA 323
           ++  R S F+RL +   EE+    T   T+PSAF+RLS+T +++ +   A
Sbjct: 385 SNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRA 434

[Close]

BLAST of Spg030479 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 7.6e-37
Identity = 100/240 (41.67%), Postives = 134/240 (55.83%), Query Frame = 0


Query: 136 EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------- 195
           E ST+  K  ++ DEK S+ PILRYVPLSRRKKGESPF E  + +K              
Sbjct: 169 EASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRRTK 228

Query: 196 ---------------------------------------KKLLKEGYSLPSTRKGLGYKS 255
                                                  KKLL+EG+ +P +RKGLGYKS
Sbjct: 229 DGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKS 288

Query: 256 PEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVN 315
           PEP+RI R+GK KV D+NHITV+EVD  +EKE  +Q+TS F  I P VAR  VF+RLS+ 
Sbjct: 289 PEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMT 348

Query: 316 EAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSA 323
           EAE +  Q+ ++  + S F+RL +   EE+    T   T+PSAF+RLS+T +++ +   A
Sbjct: 349 EAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRA 408

[Close]

BLAST of Spg030479 vs. NCBI nr
Match: KAA0047672.1 (uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK08327.1 uncharacterized protein E5676_scaffold648G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 2.9e-36
Identity = 94/198 (47.47%), Postives = 130/198 (65.66%), Query Frame = 0


Query: 136 EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL- 195
           E STS  K  ++ +E  S+ PILRYVPLSR KKGESPF E  + +K    ++LKE +++ 
Sbjct: 706 EASTSTAKSVILMNENTSNPPILRYVPLSRCKKGESPFVESPQGLKVGDIEVLKESFTIQ 765

Query: 196 --PSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPP 255
               T+KGLGYKSPEP+RI R+GK KV D+NHITV+EVD  + KE   Q+TS F  I P 
Sbjct: 766 LTKITKKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEGKEGHSQRTSAFDRISPH 825

Query: 256 VARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRL 315
           VAR  VF+RLS+ EA+ +  Q+ ++  R S F+RL +   EE+        T+PSAF+RL
Sbjct: 826 VARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQASMTTKPSAFERL 885

Query: 316 SVTTRRDKKEQSALSISH 328
           S+T +++ +   A  I+H
Sbjct: 886 SITKKKNAQTPRAPIINH 903

[Close]

BLAST of Spg030479 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 4.9e-36
Identity = 146/471 (31.00%), Postives = 197/471 (41.83%), Query Frame = 0


Query: 4   DENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKGKKKTRRSKPVVEETEDFFC 63
           +++EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K KKKTR+ K V E+ +DF  
Sbjct: 476 EDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVHEKDKDFPR 535

Query: 64  PPQPITLAEYFPRRFLDDSQREALETVT-----------------CHIVDVVEDD----- 123
             + +TLA++FP RFL D Q E    V                  C  +D  ++D     
Sbjct: 536 TQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFSDEDLLLGS 595

Query: 124 ---DVPASSSGTV---------ADPG---------------------------------- 183
              + P   SG V          D G                                  
Sbjct: 596 KLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKLVIQGFNQG 655

Query: 184 -----DLSYF-----------------------SIKGLLSLPQEAKSG-------EVSTS 243
                D  ++                        +K L S      +G       E STS
Sbjct: 656 SQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHSGKSEASTS 715

Query: 244 LVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK------------------- 295
             K  +V DEK S+ PILRYVPLSRRKKGESPF E  + +K                   
Sbjct: 716 TAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESFTTPLTKIT 775

[Close]

BLAST of Spg030479 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-38
Identity = 100/212 (47.17%), Postives = 134/212 (63.21%), Query Frame = 0


Query: 132 AKSGEVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK---------- 191
           ++ GE STS  K  ++ DEK S+  ILRYVPLSRR+KGESPF +  + +K          
Sbjct: 69  SRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLS 128

Query: 192 ---KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQ 251
              KKLL+EG+ +P +RKG GYKSPEP+ IIR+ K KV D+NHITV EVD  +EKE   Q
Sbjct: 129 LIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQ 188

Query: 252 QTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTL 311
           + S F  IRP V R  VF+RLSV + E +  Q+ +S  + S  +RL M   +E+ T   L
Sbjct: 189 RISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLTMTFKKEKCTCQAL 248

Query: 312 DVTRPSAFQRLSVTTRRDKKEQSALSISHRLR 331
             TRPSAF+RLSV  ++D  +   + I +R+R
Sbjct: 249 RATRPSAFERLSVAKQKD-AQTPRVPIFNRIR 279

[Close]

BLAST of Spg030479 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-38
Identity = 100/230 (43.48%), Postives = 133/230 (57.83%), Query Frame = 0


Query: 136 EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------- 195
           E ST+  K  ++ DEK S+ PILRYVPLSRRKKGESPF E  + +K              
Sbjct: 205 EASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKRRTKDGFDPKAYKL 264

Query: 196 -----------------------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRG 255
                                        KKLL+EG+ +P +RKGLGYKSPEP+RI R+G
Sbjct: 265 MAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKG 324

Query: 256 KAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTN 315
           K KV D NHITV+EVD  +EKE  +Q+TS F  I P VAR  VF+RLS+ EA+ +  Q+ 
Sbjct: 325 KKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQST 384

Query: 316 NSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSA 323
           ++  R S F+RL +   EE+    T   T+PSAF+RLS+T +++ +   A
Sbjct: 385 SNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRA 434

[Close]

BLAST of Spg030479 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.7e-37
Identity = 100/240 (41.67%), Postives = 134/240 (55.83%), Query Frame = 0


Query: 136 EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------- 195
           E ST+  K  ++ DEK S+ PILRYVPLSRRKKGESPF E  + +K              
Sbjct: 169 EASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRRTK 228

Query: 196 ---------------------------------------KKLLKEGYSLPSTRKGLGYKS 255
                                                  KKLL+EG+ +P +RKGLGYKS
Sbjct: 229 DGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKS 288

Query: 256 PEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVN 315
           PEP+RI R+GK KV D+NHITV+EVD  +EKE  +Q+TS F  I P VAR  VF+RLS+ 
Sbjct: 289 PEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMT 348

Query: 316 EAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSA 323
           EAE +  Q+ ++  + S F+RL +   EE+    T   T+PSAF+RLS+T +++ +   A
Sbjct: 349 EAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRA 408

[Close]

BLAST of Spg030479 vs. ExPASy TrEMBL
Match: A0A5D3C8N8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001250 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-36
Identity = 94/198 (47.47%), Postives = 130/198 (65.66%), Query Frame = 0


Query: 136 EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL- 195
           E STS  K  ++ +E  S+ PILRYVPLSR KKGESPF E  + +K    ++LKE +++ 
Sbjct: 706 EASTSTAKSVILMNENTSNPPILRYVPLSRCKKGESPFVESPQGLKVGDIEVLKESFTIQ 765

Query: 196 --PSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPP 255
               T+KGLGYKSPEP+RI R+GK KV D+NHITV+EVD  + KE   Q+TS F  I P 
Sbjct: 766 LTKITKKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEGKEGHSQRTSAFDRISPH 825

Query: 256 VARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRL 315
           VAR  VF+RLS+ EA+ +  Q+ ++  R S F+RL +   EE+        T+PSAF+RL
Sbjct: 826 VARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQASMTTKPSAFERL 885

Query: 316 SVTTRRDKKEQSALSISH 328
           S+T +++ +   A  I+H
Sbjct: 886 SITKKKNAQTPRAPIINH 903

[Close]

BLAST of Spg030479 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-36
Identity = 146/471 (31.00%), Postives = 197/471 (41.83%), Query Frame = 0


Query: 4   DENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKGKKKTRRSKPVVEETEDFFC 63
           +++EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K KKKTR+ K V E+ +DF  
Sbjct: 476 EDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVHEKDKDFPR 535

Query: 64  PPQPITLAEYFPRRFLDDSQREALETVT-----------------CHIVDVVEDD----- 123
             + +TLA++FP RFL D Q E    V                  C  +D  ++D     
Sbjct: 536 TQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFSDEDLLLGS 595

Query: 124 ---DVPASSSGTV---------ADPG---------------------------------- 183
              + P   SG V          D G                                  
Sbjct: 596 KLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKLVIQGFNQG 655

Query: 184 -----DLSYF-----------------------SIKGLLSLPQEAKSG-------EVSTS 243
                D  ++                        +K L S      +G       E STS
Sbjct: 656 SQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHSGKSEASTS 715

Query: 244 LVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK------------------- 295
             K  +V DEK S+ PILRYVPLSRRKKGESPF E  + +K                   
Sbjct: 716 TAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESFTTPLTKIT 775

The following BLAST results are available for this feature:

BLAST of Spg030479 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043405.1	3.1e-38	47.17	hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]	[more]
KAA0055957.1	6.9e-38	43.48	uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]	[more]
TYK28162.1	7.6e-37	41.67	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]
KAA0047672.1	2.9e-36	47.47	uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0061113.1	4.9e-36	31.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]

BLAST of Spg030479 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPR5	1.5e-38	47.17	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UMY2	3.3e-38	43.48	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DXC7	3.7e-37	41.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C8N8	1.4e-36	47.47	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00125...	[more]
A0A5D3BY54	2.4e-36	31.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg030479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030479.1	Spg030479.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process