Spg030476 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030476
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L11
Location	scaffold6: 30056542 .. 30058468 (+)
RNA-Seq Expression	Spg030476
Synteny	Spg030476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTCTTCGCCCTCCCTCGGATTGAGCAGTACACACTAGTCGTCGTCATCGCAGTCGCCTACCAGAACACTCCAATGGCTTCGAAGAAGAAGTTTTCGAACCCCATGAGGGATATTAAGGTGCATAAACTCGTTCTCAATATCTCAGTCGTTGAGAGCGCAAATCGACTTACCAGAGCTACTAAGGTACTAATTTGTTCCGTGTGGCCAGAGCCCTGTGGTCTCTGAAGGTACATTTTTTGTATGCTTTTGGGAATCAAAGATGCTCTGATACCAAATGATAAAGGAACTATCTCAATTACGTTTGAGAACTCCCTTTATTTCAGGTGAACCCCCACAACAATAATAAGAATAACCCCCTTAACGAAATGATAGACAACCCCAAGAAAGTTAAACAGATTTTGCTTGGAAGGATGATCAAAGATCAAGAAGAAAGGAGAACTCGTTCCTAACTTCAAGATTTCGAACTCTTCACAATCTAATTGATCAGACTACATTGAAAGTCCTAGGCATGCATTCTAAACACAAGAACACAAAGAAAGCATAAAAGCTTGAGAAAGACTAAACTCAATCTGAAATTTCATTCAAATTCAACTTCAACTTGTGTTCAAATGACAAATTACATCTCTATTTATACTAATTGAAAAGACACCATGAAAGGACACAACCTTTCACCTATGTAGCCTAGATTCAACCGCCAACCCTTAAAATCCATACATGAACCATCATAAATACAAATACATGAATTAAATAGGTACATAATGCATTAAATATGATGGATGAATCTGGATTTTAGATTCATTATGCCTCTTGGTTGAAAGGATGTCTTTGTTATGCTTGAAAGGATGCAACTTTTCATCATAATAATTGGATTGAGCTGGTTGATCACTTATTTCCTTATCACTAAGTATGTGTCTTATTGCTTATATGACTGTAGATTTATGGCAAATATTCATTTATTAAGAATCTATTTTGCTCAGGTGCTTGAGAAACTGATCAGCCAGAGCCCTGTGGTCTCTGAAGGTACATTTTTTTCTCATCCCGTACTCATTTGACTTAGATTCTGGAATGGTACGAATGAATATAGGAAAATCCATATTCGAGAAATTTAGAATCTTTAGTTGAAATTGAAACAGGGAAAAATGCAGTTTAGATTCCACTCATAGAAGCCGTTTGGATGAGTTCATATGTTGAGTTTATGAGTTTACATTTTCAGAATTGAACTAAAGTTATTTTTGAAAGATTAGCTTGATATTGGATCTGATATCCTATGTAATTGTTTTGTGGGTTTTCTTTTGTTGTTATTGTGGTCACTGGAGGCTATGAGAGAGAGGTAAATGAGATATTCATAAATTAAATGCATCTAATGAGTTCAAAGGATTGCTTTTGAGAGTATGAAAGATACATGATTACAGAGCCCGGTAAAAATTAGTAAACTTTTTAACAATAATTTTTTTGTATAGTCTTTTGATTCTTTTAATTAGTTTTTTCATGAGAAGTTGCCCGGAGAAAACCTTTATCCTTTGCAGGTACTCAGTTCTTTCGACCCTAGAAAGTCCCTACATTCTGATGTGTATAGTTTGTTCCTAATGAGAAGTAATTATGTAATATTAGAATTCATTTTTTCAGTTATCTTTTCTTGTTCATTTTTGTACGATTATGTTTGTTCCTAATGAGAAGTAAGTGTATAATGTGTATAGTTTCTTTTACTTGAACAAGAAAAGGAAATTATTGTTTTCCATTTCTTATCTTTCCCTTTTTTTTTTCTGTAGGTTGTTGAATTCGGCAGATTAGTTAGTTCATTAAAACTTGATGAACCTGAAGATGTAATTGTATCTGCTTGTCAATAACTGATTGCCATCTTCCATCAAAGACTTGAGTAGAAAATTGTTTATGTTACACAACATTGTCTACTCCCATTAACAGA

mRNA sequence

GATTTCTTCGCCCTCCCTCGGATTGAGCAGTACACACTAGTCGTCGTCATCGCAGTCGCCTACCAGAACACTCCAATGGCTTCGAAGAAGAAGTTTTCGAACCCCATGAGGGATATTAAGGTGCATAAACTCGTTCTCAATATCTCAGTCGTTGAGAGCGCAAATCGACTTACCAGAGCTACTAAGGTGCTTGAGAAACTGATCAGCCAGAGCCCTGTGGTCTCTGAAGGCTATGAGAGAGAGGTTGTTGAATTCGGCAGATTAGTTAGTTCATTAAAACTTGATGAACCTGAAGATGTAATTGTATCTGCTTGTCAATAA

Coding sequence (CDS)

GATTTCTTCGCCCTCCCTCGGATTGAGCAGTACACACTAGTCGTCGTCATCGCAGTCGCCTACCAGAACACTCCAATGGCTTCGAAGAAGAAGTTTTCGAACCCCATGAGGGATATTAAGGTGCATAAACTCGTTCTCAATATCTCAGTCGTTGAGAGCGCAAATCGACTTACCAGAGCTACTAAGGTGCTTGAGAAACTGATCAGCCAGAGCCCTGTGGTCTCTGAAGGCTATGAGAGAGAGGTTGTTGAATTCGGCAGATTAGTTAGTTCATTAAAACTTGATGAACCTGAAGATGTAATTGTATCTGCTTGTCAATAA

Protein sequence

DFFALPRIEQYTLVVVIAVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVEFGRLVSSLKLDEPEDVIVSACQ

Homology

[Close]

BLAST of Spg030476 vs. NCBI nr
Match: KAF8115112.1 (hypothetical protein N665_0030s0147 [Sinapis alba])

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVEF 85
          MAS KK SNPMRDIKV KL+LNISV ES +RLTRA+KVLE+L  Q+PV S+G    V  F
Sbjct: 1  MASDKKLSNPMRDIKVQKLILNISVGESGDRLTRASKVLEQLSGQTPVFSKGMRYTVRSF 60

Query: 86 G 87
          G
Sbjct: 61 G 61

[Close]

BLAST of Spg030476 vs. NCBI nr
Match: PON41134.1 (Ribosomal protein [Parasponia andersonii])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 11  YTLVVVIAVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQ 70
           Y  +++ +   + TPMAS+KK SNPMR+IKV KLVLNISV ES +RLTRA KVLE+L  Q
Sbjct: 40  YRPLLLCSTFLRTTPMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ 99

Query: 71  SPVVSE 77
           +PV S+
Sbjct: 100 TPVFSK 105

[Close]

BLAST of Spg030476 vs. NCBI nr
Match: KFK30843.1 (hypothetical protein AALP_AA6G032600 [Arabis alpina])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVE- 85
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G     VE 
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKGKVFFYVES 60

Query: 86 FGRLVSSLKLDE 97
            RL+S   L E
Sbjct: 61 IQRLISEKNLVE 72

[Close]

BLAST of Spg030476 vs. NCBI nr
Match: KAG6594538.1 (60S ribosomal protein L11-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 18  AVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
           A+ + +  MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  QSPV S+
Sbjct: 265 ALNFDSAKMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSK 323

[Close]

BLAST of Spg030476 vs. NCBI nr
Match: KAG5545085.1 (hypothetical protein RHGRI_017522 [Rhododendron griersonianum])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVEF 85
          MAS+KK SNPMR+IKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G    V  F
Sbjct: 1  MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKGTRYTVRSF 60

Query: 86 G 87
          G
Sbjct: 61 G 61

[Close]

BLAST of Spg030476 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 5.9e-12
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSK 51

[Close]

BLAST of Spg030476 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 5.9e-12
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSK 51

[Close]

BLAST of Spg030476 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-11
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMR+IKV KLVLNISV ES +RLTRA+KVLE+L  QSPV S+
Sbjct: 1  MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSK 51

[Close]

BLAST of Spg030476 vs. ExPASy Swiss-Prot
Match: Q0DK10 (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-11
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMR+IKV KLVLNISV ES +RLTRA+KVLE+L  QSPV S+
Sbjct: 1  MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSK 51

[Close]

BLAST of Spg030476 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-11
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMR+IKV KLVLNISV ES +RLTRA KVLE+L  Q+PV S+
Sbjct: 1  MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSK 51

[Close]

BLAST of Spg030476 vs. ExPASy TrEMBL
Match: A0A2P5AX49 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_292060 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 11  YTLVVVIAVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQ 70
           Y  +++ +   + TPMAS+KK SNPMR+IKV KLVLNISV ES +RLTRA KVLE+L  Q
Sbjct: 40  YRPLLLCSTFLRTTPMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ 99

Query: 71  SPVVSE 77
           +PV S+
Sbjct: 100 TPVFSK 105

[Close]

BLAST of Spg030476 vs. ExPASy TrEMBL
Match: A0A087GLU1 (Ribosomal_L5 domain-containing protein OS=Arabis alpina OX=50452 GN=AALP_AA6G032600 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVE- 85
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G     VE 
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKGKVFFYVES 60

Query: 86 FGRLVSSLKLDE 97
            RL+S   L E
Sbjct: 61 IQRLISEKNLVE 72

[Close]

BLAST of Spg030476 vs. ExPASy TrEMBL
Match: A0A0D3CUN5 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVV 84
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G   E +
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKGERNEKI 58

[Close]

BLAST of Spg030476 vs. ExPASy TrEMBL
Match: D7LW67 (60S ribosomal protein L11 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_486323 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-10
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEG 78
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKG 52

[Close]

BLAST of Spg030476 vs. ExPASy TrEMBL
Match: A0A3P5Z4G3 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA06T27503Z PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-10
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEG 78
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKG 52

[Close]

BLAST of Spg030476 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-13
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSK 51

[Close]

BLAST of Spg030476 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-13
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSK 51

[Close]

BLAST of Spg030476 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-13
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSK 51

[Close]

BLAST of Spg030476 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-13
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 26 MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Sbjct: 1  MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSK 51

[Close]

BLAST of Spg030476 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 36 MRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE 77
          MRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Sbjct: 1  MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSK 41

The following BLAST results are available for this feature:

BLAST of Spg030476 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8115112.1	1.8e-10	67.21	hypothetical protein N665_0030s0147 [Sinapis alba]	[more]
PON41134.1	3.1e-10	60.61	Ribosomal protein [Parasponia andersonii]	[more]
KFK30843.1	3.1e-10	63.89	hypothetical protein AALP_AA6G032600 [Arabis alpina]	[more]
KAG6594538.1	3.1e-10	67.80	60S ribosomal protein L11-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG5545085.1	3.1e-10	67.21	hypothetical protein RHGRI_017522 [Rhododendron griersonianum]	[more]

BLAST of Spg030476 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42795	5.9e-12	74.51	60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2	[more]
P42794	5.9e-12	74.51	60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2	[more]
A2YDY2	1.7e-11	74.51	60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S...	[more]
Q0DK10	1.7e-11	74.51	60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2...	[more]
P46287	2.2e-11	72.55	60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1	[more]

BLAST of Spg030476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5AX49	1.5e-10	60.61	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_292060 PE=3 SV=...	[more]
A0A087GLU1	1.5e-10	63.89	Ribosomal_L5 domain-containing protein OS=Arabis alpina OX=50452 GN=AALP_AA6G032...	[more]
A0A0D3CUN5	2.0e-10	68.97	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1	[more]
D7LW67	3.4e-10	75.00	60S ribosomal protein L11 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYD...	[more]
A0A3P5Z4G3	3.4e-10	75.00	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA06T27503Z PE=3 SV=...	[more]

BLAST of Spg030476 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42740.1	4.2e-13	74.51	ribosomal protein large subunit 16A	[more]
AT3G58700.1	4.2e-13	74.51	Ribosomal L5P family protein	[more]
AT4G18730.1	4.2e-13	74.51	ribosomal protein L16B	[more]
AT5G45775.2	4.2e-13	74.51	Ribosomal L5P family protein	[more]
AT5G45775.1	2.4e-08	73.17	Ribosomal L5P family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 26..86 e-value: 9.9E-10 score: 40.2
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 26..75
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 15..77
None	No IPR available	PANTHER	PTHR11994:SF31	60S RIBOSOMAL PROTEIN L11-1	coord: 15..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030476.1	Spg030476.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome