Spg030475 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030475
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotrans_gag domain-containing protein
Location	scaffold6: 32941572 .. 32942696 (+)
RNA-Seq Expression	Spg030475
Synteny	Spg030475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCATTGTTGACGTTGAGTGTACTCTGTGACAACGATGCGGTCCTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTATATTGGGCGTGCCCTACACAACGTAGATCTGTCATGTTAGTTAAAATGTTTGATATACTTGATATGCCTTGCTATATTTTAATGACTACTTGCAAAGTATTTGAGAAAGCTTTTATCATTACACGTTTATGTTTAACGCTTTGATTAAACAGATTTATATGTTTAAAGGTTTATCATGTGTTCTTATTTGTGGATTAACAGTTTTAAATTTAGTCACTTCCTGGGCTTCATAGCTCACTCTTTCAAAATGTTTTCCCACTTTCCAGGTAGCGGTCGAGCTTCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAAGCTTCAGTACATGGGTGGAGTTGTACATTGTGTCTGTTTGTATTGTAAATGTCTTTGTAGGAGTTGGATAGTTTACGGTTTGTGTAAGCTCTAGATGTTCTTGTTGTGTAGACCCTAGTTGGATATGTTTTGGTTGTGATGTCTCTATCAGGTTATTTCCCAAACTGAGTTATGTCAGGGCTGCACTTTATGTATGTCTAAAGGTTTTCAAGGATTCCGCTGTGTTGTGTTACATGTAAAGTATTTTTTATCTAAGATTTGTATGTTTATCAGGTTCAACGGTTCAGCAGAGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCAGGAGGGGGGTGACAACTTGGTATCAGAGCAGTTAGCTCCATGGGAAATGAGACAGAGCAGTTAGCTCTAAGAAGAAACTAGGAAGTAAATAGTTAGACGTTGAGTCAGTTCATATAGAACTAGTAGAGTATGGTCCAAGTAGGGATAAGAGCAAGTCCAGTCAGGACTACAATGTGGGTAGAAGTTTAGTATCATGCATCTGAGTTAAGTATCTATAGCATGTCTGATGTATTGATATGTTAT

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGCGGTCGAGCTTCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAAGCTTCAGTACATGGGTGGAGTTGTACATTGTGTTATTTCCCAAACTGAGTTATGTCAGGGCTGCACTTTATGTTCAACGGTTCAGCAGAGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCAGGAGGGGGGTGA

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGCGGTCGAGCTTCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAAGCTTCAGTACATGGGTGGAGTTGTACATTGTGTTATTTCCCAAACTGAGTTATGTCAGGGCTGCACTTTATGTTCAACGGTTCAGCAGAGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCAGGAGGGGGGTGA

Protein sequence

MTEILSPRLYGTVCTQVAVELPVPDKLPKSAKSFPIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG

Homology

[Close]

BLAST of Spg030475 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-08
Identity = 45/100 (45.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVAVELPVPDKLPKSAKS----FPIKLQYMGGVVHCVI---SQTE 60
           MTEILS RLYGTVCTQV +ELP+PD LP SA+S    F   L+     VH  I      +
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  LCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSG 94
           +  G  L   V       +  DDV WLHA+ R K A   G
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg030475 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-07
Identity = 46/113 (40.71%), Postives = 53/113 (46.90%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMG 60
           MTEILSPRLYGTVCTQ                 V +ELPVPD LP SA+S       ++ 
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  GVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG 96
             V  V  +     G              + EDDV WLHA+ R K AG  GGG
Sbjct: 61  LYVEFVHVEMFWLAGI-------------VREDDVCWLHAVFRAKTAGGPGGG 100

[Close]

BLAST of Spg030475 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-07
Identity = 46/113 (40.71%), Postives = 53/113 (46.90%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMG 60
           MTEILSPRLYGTVCTQ                 V +ELPVPD LP SA+S       ++ 
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  GVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG 96
             V  V  +     G              + EDDV WLHA+ R K AG  GGG
Sbjct: 61  LYVEFVHVEMFWLAGI-------------VREDDVCWLHAVFRAKTAGGPGGG 100

[Close]

BLAST of Spg030475 vs. NCBI nr
Match: TYK05030.1 (uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 45/115 (39.13%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSF---PIKLQY 60
           MTEILS +LY TVCT                  V +ELPVPD LP SA+SF   P++   
Sbjct: 1   MTEILSLKLYSTVCTHVIFPLSTLSVLSDNDAVVEIELPVPDTLPTSAESFNQTPVR--- 60

Query: 61  MGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG 96
                 C++S   L   C +   V       +  DDV WLHA+ R K+AGS  GG
Sbjct: 61  ---GWSCILSLFML--KCFVRFNVSVGSIGIIRGDDVCWLHAVFRAKIAGSPRGG 107

[Close]

BLAST of Spg030475 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 40/112 (35.71%), Postives = 48/112 (42.86%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQYMGG 60
           MTEILS RL+GTVCTQ                 V +ELPVPD LP S +S      Y   
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYF-- 60

Query: 61  VVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG 96
                    ++  G  L   +       +  DDV WLHA+ R K  G   GG
Sbjct: 61  -------TNQVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGG 103

[Close]

BLAST of Spg030475 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 45/100 (45.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVAVELPVPDKLPKSAKS----FPIKLQYMGGVVHCVI---SQTE 60
           MTEILS RLYGTVCTQV +ELP+PD LP SA+S    F   L+     VH  I      +
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  LCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSG 94
           +  G  L   V       +  DDV WLHA+ R K A   G
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg030475 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 46/113 (40.71%), Postives = 53/113 (46.90%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMG 60
           MTEILSPRLYGTVCTQ                 V +ELPVPD LP SA+S       ++ 
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  GVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG 96
             V  V  +     G              + EDDV WLHA+ R K AG  GGG
Sbjct: 61  LYVEFVHVEMFWLAGI-------------VREDDVCWLHAVFRAKTAGGPGGG 100

[Close]

BLAST of Spg030475 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 46/113 (40.71%), Postives = 53/113 (46.90%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMG 60
           MTEILSPRLYGTVCTQ                 V +ELPVPD LP SA+S       ++ 
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  GVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG 96
             V  V  +     G              + EDDV WLHA+ R K AG  GGG
Sbjct: 61  LYVEFVHVEMFWLAGI-------------VREDDVCWLHAVFRAKTAGGPGGG 100

[Close]

BLAST of Spg030475 vs. ExPASy TrEMBL
Match: A0A5D3C0X3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002850 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.9e-06
Identity = 45/115 (39.13%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSF---PIKLQY 60
           MTEILS +LY TVCT                  V +ELPVPD LP SA+SF   P++   
Sbjct: 1   MTEILSLKLYSTVCTHVIFPLSTLSVLSDNDAVVEIELPVPDTLPTSAESFNQTPVR--- 60

Query: 61  MGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG 96
                 C++S   L   C +   V       +  DDV WLHA+ R K+AGS  GG
Sbjct: 61  ---GWSCILSLFML--KCFVRFNVSVGSIGIIRGDDVCWLHAVFRAKIAGSPRGG 107

[Close]

BLAST of Spg030475 vs. ExPASy TrEMBL
Match: A0A5D3DIE3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00440 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 42/111 (37.84%), Postives = 48/111 (43.24%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQYMGG 60
           MTEILS RLYGTVCTQ                 V +ELPV D L   A+SF     Y   
Sbjct: 1   MTEILSLRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVLDTLLMFAESFGSNSSYF-- 60

Query: 61  VVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGG 95
                    ++  G  L   V       +  DDV WLHA+ R K AG  GG
Sbjct: 61  -------TNQVMSGLHLVFNVSVGSTWIVRGDDVCWLHAVFRAKTAGGPGG 102

The following BLAST results are available for this feature:

BLAST of Spg030475 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062407.1	4.5e-08	45.00	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK27998.1	8.4e-07	40.71	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	8.4e-07	40.71	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK05030.1	1.2e-05	39.13	uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]	[more]
TYK01041.1	4.6e-05	35.71	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]

BLAST of Spg030475 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V638	2.2e-08	45.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DX39	4.1e-07	40.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	4.1e-07	40.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3C0X3	5.9e-06	39.13	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DIE3	3.8e-05	37.84	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Spg030475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030475.1	Spg030475.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity