Spg030466 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030466
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold6: 31679081 .. 31680768 (-)
RNA-Seq Expression	Spg030466
Synteny	Spg030466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTTCATCAGCTCCTCGGTCGAAGAAACCAAGCCCTCAACGAAAATCTTCAAGGGTTTCTTCTTCTGAGCGGCTAAAAGAGGTTTCTAATCCCTCTTCAATTTCGCAACAAGTAAGCACAAGGCATGCAGTTCGTTCGGCCTATACACGGTCGAAACCTCAAGGTACACCTCCCCGACCCAATACTCGTGCAAGATCGCGATCAAAAGAGTGGGAGGAAGAATTGAGGAGGGCCGCCGAGAGAAGCCGCAAGGCCATTGAAGATGCTGCCTTGGACACGGAGGAAGAAGAAGAAGAGGACGCACCGTTAGTCCCTAAGCCGAAGGCAGTGAGGATGAAAGAGAGGGAAGAAGAAGAAGCGTGGAAAGTAGTGGTAAAACATGTTAGAAGAAGAGGAAAAGATGAAGCTAAACCATGCAGATAGGTTGTGGCCGCAAATGTGGAGTAACCTGAAGATTTGTTTAAAGGTCGACTTGGAAATGCGACCGCAACTACTGCTCAGACAGAGGAGGATGTGCCAGTCTCTGAGGCACTTTTTAAGAAAGATGCGCCCTCATTTGGGGATCAAAGACAGGTTCAGACTTCAACCTCAGTCGCGGGTCCATCCAAGCTAAAAAGGTAAAGATCAACACGATGAGGTCCGATGTTGCAGGAGTAGGAGCAGCAGAAAAAGCAATGCAAAGTAGTAGCCGAAGCTCTATGGTTTGCAAAAGCCATGGCCTGCCAGATCAAAGACGAGCAACTAGCTAAGGAAAGAAGAAAGAAGGACGCGAAAAGTGAGGCTAAGAGGAAGAAAATCGAGGAAGAAGAGCAAGCTGCTCTCGACTTCGCCGCCGCTTGCCTGAAGGACTTAGTGGATACCACTGAAAAAGAAGAAGAAGAGTATGCACCCGCTTCTCAAGGCCATACAAGAGATTTTGTAGAGAATTTTGTGGCCACAACCGTGGTGCAAACAGAACCAGAAACAGAGTCTGCACTTGATCCTGAGGTGCAGTCGAAAAGCAAATCTCGGCACCACCACAAGAGGATGAAAATGTGTTCGAGGACCTGATCGAGCACCACAAAAAAGCCGTGTTCAAGGACCTGATTGAAGCTGAGAAAGAACGCAATGCAGCCGAAGGGAAAATTAAGAAGAGAAAAAGAAAAGATAGTTCCCTGAGGAAGCTTAGCATTAGGGAAATGACTTCTGAGCTTCCCCAAGCAAAGACACCACCATCACCGCCACCTTCGAGGAGAGAACAAGCTGTTCCTCGGCCAAAGAAGACTCCAACAAAGAGGCAGAGAGTAGAAGTCCAAGTGGAAGCACATCCAGACGCTCAGACCTGTCTAGTTATCATGAAGAAGCGAGTTTTGACGTGTAAAAAAGCATTCTCCACGAAGACAGGTCCTCTCCCAGCATTCATCGAGGATATTTTGCGCAGGTATGGCTAGGAGGGGCTATGTAAGGATCCGAAGGCTGCATCTATCCCATTGGTTCGATAGTTCTATGCACAGATAAGAGAAGAGATGCAGACGGCCATGCTCCTACGTGATAGGGTGGTGGATTTTTCAGTGAGGCAAATCAATCGGATTTTCCAACTGCCATCCCTCTGGTACCCAGTTGGCAACAAAGCCATTGAAGAACCATCTGATGAGCAGCTGGCCGAAGCCCTCCACATGGTGGCCTACGAGGGAGTTAAGTGA

mRNA sequence

ATGAAGCCTTCATCAGCTCCTCGGTCGAAGAAACCAAGCCCTCAACGAAAATCTTCAAGGGTTTCTTCTTCTGAGCGGCTAAAAGAGGTTTCTAATCCCTCTTCAATTTCGCAACAAGTAAGCACAAGGCATGCAGTTCGTTCGGCCTATACACGGTCGAAACCTCAAGGTACACCTCCCCGACCCAATACTCGTGCAAGATCGCGATCAAAAGAGTGGGAGGAAGAATTGAGGAGGGCCGCCGAGAGAAGCCGCAAGGCCATTGAAGATGCTGCCTTGGACACGGAGGAAGAAGAAGAAGAGGACGCACCGTTAGTCCCTAAGCCGAAGGCAGTGAGGATGAAAGAGAGGGAAGAAGAAGAAGCGTGGAAAGTAGTGACAGAGGAGGATGTGCCAGTCTCTGAGGCACTTTTTAAGAAAGATGCGCCCTCATTTGGGGATCAAAGACAGCAGCAGAAAAAGCAATGCAAAGTAGTAGCCGAAGCTCTATGGTTTGCAAAAGCCATGGCCTGCCAGATCAAAGACGAGCAACTAGCTAAGGAAAGAAGAAAGAAGGACGCGAAAAGTGAGGCTAAGAGGAAGAAAATCGAGGAAGAAGAGCAAGCTGCTCTCGACTTCGCCGCCGCTTGCCTGAAGGACTTAGTGGATACCACTGAAAAAGAAGAAGAAGAGTATGCACCCGCTTCTCAAGGCCATACAAGAGATTTTGTAGAGAATTTTGTGGCCACAACCGTGGTGCAAACAGAACCAGAAACAGAGTCTGCACTTGATCCTGAGGACCTGATTGAAGCTGAGAAAGAACGCAATGCAGCCGAAGGGAAAATTAAGAAGAGAAAAAGAAAAGATAGTTCCCTGAGGAAGCTTAGCATTAGGGAAATGACTTCTGAGCTTCCCCAAGCAAAGACACCACCATCACCGCCACCTTCGAGGAGAGAACAAGCTGTTCCTCGGCCAAAGAAGACTCCAACAAAGAGGCAGAGAGTAGAAGTCCAAGTGGAAGCACATCCAGACGCTCAGACCTGTCTAGTTATCATGAAGAAGCGAGTTTTGACGTGTAAAAAAGCATTCTCCACGAAGACAGGTCCTCTCCCAGCATTCATCGAGGATATTTTGCGCAGGGTGGTGGATTTTTCAGTGAGGCAAATCAATCGGATTTTCCAACTGCCATCCCTCTGGTACCCAGTTGGCAACAAAGCCATTGAAGAACCATCTGATGAGCAGCTGGCCGAAGCCCTCCACATGGTGGCCTACGAGGGAGTTAAGTGA

Coding sequence (CDS)

ATGAAGCCTTCATCAGCTCCTCGGTCGAAGAAACCAAGCCCTCAACGAAAATCTTCAAGGGTTTCTTCTTCTGAGCGGCTAAAAGAGGTTTCTAATCCCTCTTCAATTTCGCAACAAGTAAGCACAAGGCATGCAGTTCGTTCGGCCTATACACGGTCGAAACCTCAAGGTACACCTCCCCGACCCAATACTCGTGCAAGATCGCGATCAAAAGAGTGGGAGGAAGAATTGAGGAGGGCCGCCGAGAGAAGCCGCAAGGCCATTGAAGATGCTGCCTTGGACACGGAGGAAGAAGAAGAAGAGGACGCACCGTTAGTCCCTAAGCCGAAGGCAGTGAGGATGAAAGAGAGGGAAGAAGAAGAAGCGTGGAAAGTAGTGACAGAGGAGGATGTGCCAGTCTCTGAGGCACTTTTTAAGAAAGATGCGCCCTCATTTGGGGATCAAAGACAGCAGCAGAAAAAGCAATGCAAAGTAGTAGCCGAAGCTCTATGGTTTGCAAAAGCCATGGCCTGCCAGATCAAAGACGAGCAACTAGCTAAGGAAAGAAGAAAGAAGGACGCGAAAAGTGAGGCTAAGAGGAAGAAAATCGAGGAAGAAGAGCAAGCTGCTCTCGACTTCGCCGCCGCTTGCCTGAAGGACTTAGTGGATACCACTGAAAAAGAAGAAGAAGAGTATGCACCCGCTTCTCAAGGCCATACAAGAGATTTTGTAGAGAATTTTGTGGCCACAACCGTGGTGCAAACAGAACCAGAAACAGAGTCTGCACTTGATCCTGAGGACCTGATTGAAGCTGAGAAAGAACGCAATGCAGCCGAAGGGAAAATTAAGAAGAGAAAAAGAAAAGATAGTTCCCTGAGGAAGCTTAGCATTAGGGAAATGACTTCTGAGCTTCCCCAAGCAAAGACACCACCATCACCGCCACCTTCGAGGAGAGAACAAGCTGTTCCTCGGCCAAAGAAGACTCCAACAAAGAGGCAGAGAGTAGAAGTCCAAGTGGAAGCACATCCAGACGCTCAGACCTGTCTAGTTATCATGAAGAAGCGAGTTTTGACGTGTAAAAAAGCATTCTCCACGAAGACAGGTCCTCTCCCAGCATTCATCGAGGATATTTTGCGCAGGGTGGTGGATTTTTCAGTGAGGCAAATCAATCGGATTTTCCAACTGCCATCCCTCTGGTACCCAGTTGGCAACAAAGCCATTGAAGAACCATCTGATGAGCAGCTGGCCGAAGCCCTCCACATGGTGGCCTACGAGGGAGTTAAGTGA

Protein sequence

MKPSSAPRSKKPSPQRKSSRVSSSERLKEVSNPSSISQQVSTRHAVRSAYTRSKPQGTPPRPNTRARSRSKEWEEELRRAAERSRKAIEDAALDTEEEEEEDAPLVPKPKAVRMKEREEEEAWKVVTEEDVPVSEALFKKDAPSFGDQRQQQKKQCKVVAEALWFAKAMACQIKDEQLAKERRKKDAKSEAKRKKIEEEEQAALDFAAACLKDLVDTTEKEEEEYAPASQGHTRDFVENFVATTVVQTEPETESALDPEDLIEAEKERNAAEGKIKKRKRKDSSLRKLSIREMTSELPQAKTPPSPPPSRREQAVPRPKKTPTKRQRVEVQVEAHPDAQTCLVIMKKRVLTCKKAFSTKTGPLPAFIEDILRRVVDFSVRQINRIFQLPSLWYPVGNKAIEEPSDEQLAEALHMVAYEGVK

Homology

The following BLAST results are available for this feature:

BLAST of Spg030466 vs.


Match Name	E-value	Identity	Description

BLAST of Spg030466 vs.


Match Name	E-value	Identity	Description

BLAST of Spg030466 vs.


Match Name	E-value	Identity	Description

BLAST of Spg030466 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..101
None	No IPR available	COILS	Coil	Coil	coord: 261..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030466.1	Spg030466.1	mRNA