Spg030380 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030380
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA/RNA polymerases superfamily protein
Location	scaffold6: 25806930 .. 25810470 (-)
RNA-Seq Expression	Spg030380
Synteny	Spg030380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGAAATTATTTTGTGCAGAATATGTGTAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTATTGTGGTTTCATGGTTGAACTTAAGTTGTTGGGATTTACCAAGTTAAAAGAAGAAAGAAAATAAAAGGAAAGGAAAAGTAAAAAGAACAAAAGTGAAAAAAAAAAAAGGAAAATGGGAATGGACAGCAAGACACCACCACCGACAGCCTTCTTTACCAGCCCATTACCATCCATTTTTCCATAATTTTCCATCCAAATTTTCAGAGCACTTGGGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGATCAACCTGTCAACTTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGATTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAACACAGGATTTTCGAGCAAAGCAGGAGGATCTCTAGTTTTCTCTGGTTTTTCGACCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATATTATTCAATTTCCTACAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGATAGATAAAGGTCAGCAGAGAACCTCGAATCTGTATTGTCTATGTTCGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGTAAGTTATAGAGTGTTCGAAAATGAAGAGTTTGATGTATAGTACATTAATTTTGGTTAAGTATTGTTGACGTTATGGGTGTTGGAAGGTGTGGTATTGAATCTGGAAAATCTGGAAAGTAGAATGTGGAGTGAGATTTCTTATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAACTAATTATGGTTCTGATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTATGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGACGTTTTATATGCTTTTCCATGAATGATATATGATTTCTATGAATGGTCTCAAGCATAAGTTTTGAGCTTAGATTTTCTAACGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACCTTTAAACGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTTCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCAGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTAATATGCCTTTAATGACGAACTTGCGAGATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGCTTAAAGGCTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAATGTTAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCACGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCGGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTAAGGATTGGATAATTTAGACCTAGAGGTCGTGGTTGTATAAACCCTGGTTATATATGTTTTTGGTTGTGATATCTATATCAAGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGAAAGTTTTTTTTCAGGGATTCCACTGTGTTTTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAAGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGGGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATATGTTGCTGGGTGACTTAAGGGAGCAAAATCTGTGCTGGAGCAAAGCTGGGAGCAAAACTGCCACGTCACAGCTCGTTAGCCAATTTAACAAACTGAATTCTGTTAAGCTATTCTTGGATTTATGGAGCAAGAAGAGCCATCCACGTGTCTAGGTCAACCTAATTCAAGCCTCCTATTACTCTATAAAAGGAGATAGCCGCCCAAGTCAAATTCATTCCTTTTTGGGGGAAGGAAATTCCATCTTTGGGAGGAGCATTCCACTCTTGGAAGGATCATTTCTTATTTCCATTTTAGGAGCCGAATAGAGGAGAAAGACTGGAGACCAACAAGAAGACCATCAATTGCAAGCTGATCAAGGGAATTAATATTTTCTTGCATTATTTTGTAGTTATGGATATGCTTACTCAGATTGTAACGTGTGTTTCCATGCATTTTATGAACTAAGTAACTTTAGGCATTGGTTAGGGAACATGTAGTTGTCGTGCTTAATTTCTAGTAATAAATATTGATTTGATGCATCTTGATTAATTGTTGTGTTCATTTCTATTTTATGCCCGCCTGGCCAGCCGGTATGAATACCTCTCTCTAGTTTCAGGGATGATTTAGAGAGTGTGTGGCGGTTAATCACACTAGATCATTGTGTATTGGTGAACGCCAGTGACTGAGCTAGGGATAGCTAGTTGCCTAGTGCTTGATTGGTAGAGCTTCATTGGAGTTGAAATATATTCTAAAAAATCCGGAGTTCCGGGAGGAATCCGCTAATATGACTGCGAGAGTTCTGCATGATCAATAATATTGCTAGAGCATCTTTTAAAACAATTACTAAATCCTGACCAGCGCCTGTTTCTAATCTGTCTGCCTATTTGTTTACTTTCTGTTCTGTCATTTCTTTTGCTTCAGCATTCTATAAAAACCAATCATTTTAACCACCTTTGAAACCATTAAAAAGATAAACAAAATAGATAAAGTGGAAGCTAATTCAGACCTTGGATTCGATAAATACTTATTACTTGCTGCGGATTGTGTATACTTGCACAGAGTTCTAGAGTCTTTTTATATCTTATTTTTACTCACTCTAGGAACCCAACAAGTTTTTGGCACCGTTGCCAGGGACTTGAATAAGTTTTTATCTGATCTGTTTTGTGTATGTGTTTTAGTAGTTTGGTGCTAGAACTTTTTGATTGTTTCTTTTGTTTTTGCAGGTGTGAGTTTGGTGCATGA

mRNA sequence

ATGTTCGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCGGATCAAGCTCCAGAGGGTCAGCGGGTATCGTTAGAGGGGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAA

Coding sequence (CDS)

ATGTTCGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCGGATCAAGCTCCAGAGGGTCAGCGGGTATCGTTAGAGGGGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAA

Protein sequence

MFGAFLDKLVENLVFISSEIELPVPDTLPTSAESSGSSSRGSAGIVRGGRCPLASRHLSG

Homology

[Close]

BLAST of Spg030380 vs. ExPASy TrEMBL
Match: A0A5A7UKD3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G00860 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-04
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 19 EIELPVPDTLPTSAESSGS-SSRGSAGIVRG 49
          EIELPVPDTLPTSAESSGS SSRGS GIVRG
Sbjct: 8  EIELPVPDTLPTSAESSGSNSSRGSVGIVRG 38

The following BLAST results are available for this feature:

BLAST of Spg030380 vs.


Match Name	E-value	Identity	Description

BLAST of Spg030380 vs.


Match Name	E-value	Identity	Description

BLAST of Spg030380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKD3	7.7e-04	93.55	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Spg030380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030380.1	Spg030380.1	mRNA