Spg030337 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030337
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposable element Tf2
Location	scaffold6: 24952134 .. 24954138 (-)
RNA-Seq Expression	Spg030337
Synteny	Spg030337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGCGGACGAATATGCAATGGACTTAGGTTTCACTCTAGTGAATCGCCCGAGGACCAGAATTGCTTCAATTCAAATCAGAGATTCAATGGAGTCTTTAACTCCACCATCGAGGCCATCCGCCTCTCTCGTACGGCCTACTGCCGTTACTCCAATGAGACCTACTATCTCTCCATCTATTCCATCTTCGCCTCAACAGGGATCTTCTATCCCTACAACTTTTACTGTAGTCGTTCAGCCTCCCAAAAGATTTATTCCAAAACCTGAAATAAAAAATTATTTCGAAAAATCTCTTCAATTATCCGAACCAATAGTTGAACTCGAATTGGATGGGAGTTCAATCATTGAAATTATTCAAAATATTTATCCTCAAGGATTCTATTTCATCCCATAATCCTTAATCAAAAAAAGAAAATATTACAAATTTATTCTTGTTGATTCAAAATCTGTCGAGATAACCCATATCCCCGACAGAAATGATCCTTCAAAAATAGCTTATTCTAAGCTAAAAATCAAAAGGTCATCAATTCGACCCATTGGAATCAAAACATTCTTACAGAAAGGACACTCTCCAAACCATTCGATCCACAAACTTACTCATATCGGGATTACATTAAAGCCTGGTACAACGTTATGTGGTGCAAAAATTATGAGCATTCTTGGTTCATTGAGTTTTGCCAAAATGCTTATAAGTCAATTTTCCATTCTGGTTTATCAAATGGTGGAAGACCTTCGGATCTTCTGAAGAAATCTTTCCAGTTCCTATTCAAGAATCTTTTCATTATTTTTCTCAAACCATTTACAAAAATGCATTCCCTCTTAATATGTGTTTTTGTTTATACTTTCAAATCCCCTGGATTTTCTGCTGGAATTTCCAAACAAACACCTATACTTATTTCAAACAAATTGTTAAAATCCTTCAAATCAAATGGTGGGACAAGTATAAGTTCTCACACGCAGAACTCAAAGCAGTCAAACAATGGTTCGCCGACAATGGTTACCTTCAAGACCTCTCCAAAAGGAAAAATGCTGAATTTTTGAATTCAAAATCAAAGTTGATAGCTGCTTTGGCACAAACCACGACTGTTGCACGTTTTTTAATCTGCAAGCGAACGGGTCGTCACAAGTAATATAGTGATTTTAAGTATAGAGTATCGTCTCCACAGGGATTGGATTTATTCAATTAATTACCACAAATAATCTTGCTTAACTTTATTTAGAGAACAAAATCTTATGCCGAAAAGATAAAATAAAAAGCTAATCTAGAAAGCAAAAGATAAATGGAGACAAAATTTGGAGGGATAATTCTAGAGTTGTTGATTTCGACAATTGGACCTTTAATGCTTAATCAATTAACTAATATGGATTAACTAATCATTTGATTCATAAGTCTAGAAGCCTAATGACAAGGACTCTCCTGTCGGTCTCCTCCTATCTCATACCTTTCAATAAAGAATCTCCTTTCAGTCTCATCTTTATTTACTTAGCATGGCATTACGACCCTTCAGTACAACCTCTAACGTTATTTAGTCAATCCCGTGTCACCCGGGTAAATAACCGTCAGTCATGCATTCAGTTCTAGTCTAAGCTTCTCTCCGTCGAGTTTCCACTTAGTAACGATTCATTTAATCAGTGATCAGTTGATTAAAAGCATTACGGACAAAATGCACAAATGAACACTAATGACAATTAAACCAAATAAATTCATTAATCAAGCAAAGGTTCAACATCTAAATCAATCTCAAAGAATAAAGGAATTTACTACTCATTGATAGCGAGCATAAATGTCGCTATTTTAGTCCCAATTTATTAGGCTTTTCTGTGCTTTAATCGTGTTTTTAATGAAAATATTTAATGAATTCCGTTATTTGGTCCTTAGGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCATGGATCAAAAGGGGATCCAATGAAGCCAATCATGATGAAAATGCCCAAAAGAAGTGA

mRNA sequence

ATGAGCGCGGACGAATATGCAATGGACTTAGGTTTCACTCTAGTGAATCGCCCGAGGACCAGAATTGCTTCAATTCAAATCAGAGATTCAATGGAGTCTTTAACTCCACCATCGAGGCCATCCGCCTCTCTCGTACGGCCTACTGCCGTTACTCCAATGAGACCTACTATCTCTCCATCTATTCCATCTTCGCCTCAACAGGGATCTTCTATCCCTACAACTTTTACTGTAGTCTATAAGTTCTCACACGCAGAACTCAAAGCAGTCAAACAATGGTTCGCCGACAATGGTTACCTTCAAGACCTCTCCAAAAGGAAAAATGCTGAATTTTTGAATTCAAAATCAAAGTTGATAGCTGCTTTGGCACAAACCACGACTGTTGCACGTTTTTTAATCTGCAAGCGAACGGGTCGTCACAAGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCATGGATCAAAAGGGGATCCAATGAAGCCAATCATGATGAAAATGCCCAAAAGAAGTGA

Coding sequence (CDS)

ATGAGCGCGGACGAATATGCAATGGACTTAGGTTTCACTCTAGTGAATCGCCCGAGGACCAGAATTGCTTCAATTCAAATCAGAGATTCAATGGAGTCTTTAACTCCACCATCGAGGCCATCCGCCTCTCTCGTACGGCCTACTGCCGTTACTCCAATGAGACCTACTATCTCTCCATCTATTCCATCTTCGCCTCAACAGGGATCTTCTATCCCTACAACTTTTACTGTAGTCTATAAGTTCTCACACGCAGAACTCAAAGCAGTCAAACAATGGTTCGCCGACAATGGTTACCTTCAAGACCTCTCCAAAAGGAAAAATGCTGAATTTTTGAATTCAAAATCAAAGTTGATAGCTGCTTTGGCACAAACCACGACTGTTGCACGTTTTTTAATCTGCAAGCGAACGGGTCGTCACAAGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCATGGATCAAAAGGGGATCCAATGAAGCCAATCATGATGAAAATGCCCAAAAGAAGTGA

Protein sequence

MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRPTAVTPMRPTISPSIPSSPQQGSSIPTTFTVVYKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARFLICKRTGRHKSKVGDFGRKSAKNEANEAQIQAWIKRGSNEANHDENAQKK

Homology

[Close]

BLAST of Spg030337 vs. NCBI nr
Match: TYJ98361.1 (hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-12
Identity = 60/148 (40.54%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 1   MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRPTA-VTPMRPTISP 60
           MS D+YAMDLG+T V + R++ + I IR  MES TPP RPS +L+ P   V  MR + S 
Sbjct: 33  MSVDQYAMDLGYTTVIQSRSKSSGIWIRSPMESSTPP-RPSVNLIHPFGEVIQMRSSAS- 92

Query: 61  SIPSSPQQGSSIPTTFTVVYK-----FSHAELKA------------VKQWFADNGYLQDL 120
             PSS ++ S++PTT++             E+K+            ++  +  NG LQD+
Sbjct: 93  --PSSNRESSTLPTTYSQAVTPDKQFVPRIEIKSYFQKPIVIYDPIIELEYQKNGDLQDI 152

Query: 121 SKRKNAEFLNSKSKLIAALAQTTTVARF 131
            +RKNA+FLN K K +AAL Q T  A F
Sbjct: 153 DQRKNAKFLNDKLKFLAALVQATIDADF 176

[Close]

BLAST of Spg030337 vs. NCBI nr
Match: KAA0059031.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-11
Identity = 54/127 (42.52%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 34  LTPPSRPSASLVRPTAV-TPMRPTISPSIPSSPQQGSSIPTTFTVV-------------- 93
           +TPP RPSA+L+R + +   MRP  S    SS ++ S+  TT++                
Sbjct: 9   ITPP-RPSANLIRSSGIFVQMRPLAS---LSSNRESSTPSTTYSQTVTPDKCYNTASYPQ 68

Query: 94  ---------------YKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQ 131
                          Y F HA +K +K+WFADNGYLQD+ +RKN EFLN KSKL+AALAQ
Sbjct: 69  YKILLKNLKIKWWKKYNFQHATIKHIKEWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQ 128

[Close]

BLAST of Spg030337 vs. NCBI nr
Match: KAA0034823.1 (hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-09
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 79  YKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF 131
           Y F HA +K +K+WFA+N YLQD+ +RKN EFLN KSKL+ ALAQ TT A F
Sbjct: 14  YNFQHATIKHIKEWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQATTDADF 65

[Close]

BLAST of Spg030337 vs. NCBI nr
Match: KAA0066421.1 (hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK00863.1 hypothetical protein E5676_scaffold602G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-08
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 1   MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRP-TAVTPMRPTISP 60
           MSAD+YAMDLGFT V R R+R +SI+I  S ES TPP RPSA+L+RP      MRP   P
Sbjct: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPP-RPSANLIRPFGGAVQMRP---P 60

Query: 61  SIPSSPQQGSSIPTTF--TVVYKFSHAELKAVKQWFADNGYLQDL 103
           + PSS ++ S+ PTT+  TV           +K +F  +  + DL
Sbjct: 61  ASPSSNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDL 101

[Close]

BLAST of Spg030337 vs. NCBI nr
Match: KAA0025901.1 (hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-08
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 58  SPSIPSSPQQGSSIPTTFTVVYKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKL 117
           +PS  S+ Q    +  T T  Y F HA +K +K+WF +NGYLQD+ + KN +FLN KSKL
Sbjct: 29  APSPMSADQYAMELGFT-TEKYDFQHATIKHIKEWFVENGYLQDIDQGKNVKFLNEKSKL 88

Query: 118 IAALAQTTTVARF 131
           +A LAQ TT A F
Sbjct: 89  LATLAQATTDADF 100

[Close]

BLAST of Spg030337 vs. ExPASy TrEMBL
Match: A0A5D3BI61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00950 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.2e-13
Identity = 60/148 (40.54%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 1   MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRPTA-VTPMRPTISP 60
           MS D+YAMDLG+T V + R++ + I IR  MES TPP RPS +L+ P   V  MR + S 
Sbjct: 33  MSVDQYAMDLGYTTVIQSRSKSSGIWIRSPMESSTPP-RPSVNLIHPFGEVIQMRSSAS- 92

Query: 61  SIPSSPQQGSSIPTTFTVVYK-----FSHAELKA------------VKQWFADNGYLQDL 120
             PSS ++ S++PTT++             E+K+            ++  +  NG LQD+
Sbjct: 93  --PSSNRESSTLPTTYSQAVTPDKQFVPRIEIKSYFQKPIVIYDPIIELEYQKNGDLQDI 152

Query: 121 SKRKNAEFLNSKSKLIAALAQTTTVARF 131
            +RKNA+FLN K K +AAL Q T  A F
Sbjct: 153 DQRKNAKFLNDKLKFLAALVQATIDADF 176

[Close]

BLAST of Spg030337 vs. ExPASy TrEMBL
Match: A0A5A7UZX0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 54/127 (42.52%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 34  LTPPSRPSASLVRPTAV-TPMRPTISPSIPSSPQQGSSIPTTFTVV-------------- 93
           +TPP RPSA+L+R + +   MRP  S    SS ++ S+  TT++                
Sbjct: 9   ITPP-RPSANLIRSSGIFVQMRPLAS---LSSNRESSTPSTTYSQTVTPDKCYNTASYPQ 68

Query: 94  ---------------YKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQ 131
                          Y F HA +K +K+WFADNGYLQD+ +RKN EFLN KSKL+AALAQ
Sbjct: 69  YKILLKNLKIKWWKKYNFQHATIKHIKEWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQ 128

[Close]

BLAST of Spg030337 vs. ExPASy TrEMBL
Match: A0A5A7SWC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00570 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 79  YKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF 131
           Y F HA +K +K+WFA+N YLQD+ +RKN EFLN KSKL+ ALAQ TT A F
Sbjct: 14  YNFQHATIKHIKEWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQATTDADF 65

[Close]

BLAST of Spg030337 vs. ExPASy TrEMBL
Match: A0A5D3BM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00180 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-09
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 1   MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRP-TAVTPMRPTISP 60
           MSAD+YAMDLGFT V R R+R +SI+I  S ES TPP RPSA+L+RP      MRP   P
Sbjct: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPP-RPSANLIRPFGGAVQMRP---P 60

Query: 61  SIPSSPQQGSSIPTTF--TVVYKFSHAELKAVKQWFADNGYLQDL 103
           + PSS ++ S+ PTT+  TV           +K +F  +  + DL
Sbjct: 61  ASPSSNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDL 101

[Close]

BLAST of Spg030337 vs. ExPASy TrEMBL
Match: A0A5A7SNT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001890 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 58  SPSIPSSPQQGSSIPTTFTVVYKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKL 117
           +PS  S+ Q    +  T T  Y F HA +K +K+WF +NGYLQD+ + KN +FLN KSKL
Sbjct: 29  APSPMSADQYAMELGFT-TEKYDFQHATIKHIKEWFVENGYLQDIDQGKNVKFLNEKSKL 88

Query: 118 IAALAQTTTVARF 131
           +A LAQ TT A F
Sbjct: 89  LATLAQATTDADF 100

The following BLAST results are available for this feature:

BLAST of Spg030337 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98361.1	1.5e-12	40.54	hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]	[more]
KAA0059031.1	4.8e-11	42.52	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0034823.1	3.4e-09	63.46	hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]	[more]
KAA0066421.1	1.3e-08	46.67	hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK0086...	[more]
KAA0025901.1	2.9e-08	50.68	hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]	[more]

BLAST of Spg030337 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI61	7.2e-13	40.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UZX0	2.3e-11	42.52	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE...	[more]
A0A5A7SWC0	1.7e-09	63.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BM67	6.3e-09	46.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SNT5	1.4e-08	50.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg030337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030337.1	Spg030337.1	mRNA