Spg030287 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030287
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L11
Locationscaffold6: 15410617 .. 15415789 (+)
RNA-Seq ExpressionSpg030287
SyntenySpg030287
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAATCCCATCCGGTTGTGCAAATGGAACGCTGCCGGAAGCCGATCATCAGAGCGATTGCAGGTTTGCCATCATCGCTGGGTTTTAGCGATTGCAGGTTTTAATTTTACTAAGTTCACCCATTTTTTTGTGCGCTCGGGCTATTCTTATTATTTGCTAGCGTTATGGCAATTGCGATTTAGAATCAAGAATGTGTGATTTTCTGAAATCTATTGGCAATGATGTTCTAGTGAAATTTCTAATTTCAGGACAAATCTATGGCAGATTTAGGATATTTCCTTCATGGGTATTATCTCAGAAACTCCAAAGGATCATCAGAGTTAATAAAGCTCCTGAAGTATCCCTAACGACCTTCTTCACCGCTCTTCGAAGATTGAACAAGTCCTAGTGAATTTTTAGTCACAAATTCGGTGCGATGGGACAGATCTAGTACTCCGAGAAGTATTTCAATGATACCTATGAGTACAGGTCTATGGTTTCTCATCGTCATCTGTTTTTCGATTCAAGATTTTTGTTTCTCTGGCTTTTTCCATTGCGGTTGGTTGATTTTCATGGTTTTTTGTTTTCGTCTGTTATATAGGCATGTGGTGTTTCCTCCTGAAGTAGCGAAACTTCTTCCTAAGAATCGCCTTCTTTCTGAAGTAAGTAATACTTCATGATTCTCCTGTATATTAAAATTTCTTGTGTGGAATCCTGTTCCGGTGATTGGTAATGAAATTTAAATGGATACTCATGATTCTCGTGTATCAGAATTTCTTGTACAAAATCTCGTTCTGCTAATCGGATATGAAATAAAATTGAAAGAGAGATATCTAATACTGAGAGCCCTAGCGATTTCTCAATTCAAGAACATTCCAAAACTTGGAATCATAGATTGTGGTGCATAATCATCAGGTGCATTTCCTCTAATTGATTTTGATTGTGATACAATGTGAATAGTTAGAATTTTGTGTAATTTGATTGCGTGGTGATGGTCAGAATGAATGGCGAGCGATTGGGGTTCAGTAGAGTCGAGGATGGGTGTATTATGCAATTCATCGCCTAGAGCCGCACATCATGTTGCTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAGTAGATTCTGGCTAAGTGATAGGTTTATTATCTTTTCTATATAGGTACATTATATTTTGTCTAGAACACTAATGAAATATATTAAAAAACAAATCAGGTGTTTGTGGCTTGTTGTGTAGTGTAGTTGCTTCTCCAATTTGGAGAAGCTCTGTGGCCCAATCATAAGCCCACATTGTTGATGAATTTGTGGATCTAAATTGCTTTGGTGAATCATGGGGTTGAAGGAGGTGAATTGTTGAAGAAAAAAAATATTTACTATTATGTTTTCGCAAAAATGATAATTAAAAAAAAGTGTTCCTTTCGGAGGATGAAATTGTTTTAAAGCACTAATTTGTTCTCTTACTTTCTCTTTTTGCCCATGTGTTAGGCTATTTGAATACTGGTTAGTACCAGAACTTTTTGCAATAAACCTTCACATGAGAAGTTGCTGCAATTTCATTGTTATGTTTTAGTTGTTATTATAAGTTTTTTAGCATTTTGTCAGATTTATAGTCCCAAAGAAATTGTATTTAGGAAGGGGCTAGCTTGAAAATCGGAATAAGAATTTAGGATGAGGAAAATGTTTGCAGTAAAAGTTCATGAAAAGTTCTTAGAGATTTCTTAGAAAACTGGAAATTAGTTACTCTTACTCGTTTATTCTTTGGGAAGCTTGAAAATAGGAACCTAAGAAACAAGAATGCTGCTTGAAAAGGGCTATAGCCTGAGGAAAGTGAGGAGAGTGCTTTTTGACAGAAATTGAGAGTGCTTTTTGACAGAAATTGATAAAGACTCTTTTTGACAGAAATTGAGAAAAGCTGGAGACAGTCTTTGTTTAAGGCAAGATGCAGAAGATGTTTGCTGGAAGTTTGAAGAGTCAATATCAAACTTACAACTCATATCAATGTAAGCAAGATAGAAACATCTTTTATGTTTCAAGTTTTGGAATCATTTTCTTTATGAATTTTGCTACTTTAAGATTACCAAAGGAGTGGGATGGATCCAATACAAGAGACGACTTGTGAATTCTCAATTGTGAATGAGAAACTCTTTTTGGCCACTTTAAGGTCAGGAGGTTGTACATAATTTTTAGAGGTAAAAAACATGAATTTAAAGAAAGAAAACAAAGAAATGCTTGTAGACAGAAAATAATATGGATAAAAATGCAATGTTGTGTTGTGTATAGATAAAATCCTCTGAATATGGTCGAGATTGAATTGGACTCCAATTCATAATTGTATATCTTTTTGTGTTGGCTTAAGAAAATAATAGGTCATTTGAGATAATGGTTGAATGAATTTATCATTGAACTGAGGAAGGTGAACACTCCCTAAACTCTTCTCTTATATTTACAATAAAGTTTTATTTGTTTTGTTAATCGTATACTTAGATGTTTTTAATTATTCTAATAATTTAGATTTAACTATGGTGTTTATTGTTAAGCAGATTGACTGGGATGTACACACAATACTATCTTTTTTTTTTAAAGAGAAAAAATTCTTGTTATGTTACATTTCCATTGAAGTTAGACTAAAATACAACAAAAATTCTCACGTGTGGGAATTTAGCAAATTGAACATTCTTGCCGCAACCCAACAAAACTCAAACTAAGTGTCATTTGGCTGACCTAAAATAGAATGGTGTTATATGTTGTTGGATTAGATTTCTTTTTAACTGAGGAACTTGATTTCGTGTTTAGATTATAAGCTTGATGGACATTGGTGCTCGTATCTAACTTGTCTATGATTAAAGTTTTCTATGTGTGTTTAATTGTCATTTTAATAGCAGTCAATCTTTTTTTTATTGTTTTTGTTGGATATAATTATGCTTAGGGGTGAATTAGACTAAGAACCTTAAATGCGAGGATGTTCATATTGTTCACGTGAACTCTTAGACACCTAATAGTAAGAAGCTGTGATATGTAACCTTTGTTAAACATTAATTTTTGAAGTTTAACAAATCTTTGAAAATGTTTTCTTATGAGATTTATTTCAACTCCTTTTTAAAGATTAAGTTTATCAATTTTTACTTTTGGAAAATAATGACTATGCAACTTTTTTCTTCACTCAGTTATATACTTTGATTACATTGTAAGGTTTAGTTCACTGTCATAGGTGAAGCACTTGGTTACTCAACTAAAATTGCATCAAGATATGTAAACATAAATTGAACTAAAGTTATCTTTGAAAGATATTGCTTGATATTGGATTTGATATCTTATGTAATTGTTTTATGTGGCTTTTTTTGTTGTTATTGTGGTCAATAGGGAGATACCCTGTTCTTCCATTTGGAATCAGATGTAATGAGAAGATTGCTTGCTATCTCACCCTTAGAGGTGAGATGGTGATGCAAATTTTGGAATGTGGGTTGAAGGTTAAGGAGTACGAGTTGCATCACAGGAACTTCAGTGACATTGGATGCTTTGGCTTGGTATTCAGGAGCACATCGATTTTGGAATCTAAGTAAGCCTTTGTACTTCTGAATATCCTTCAAGTTATGCTCCAAAAATTTGTATGAAAATCACTAAAATAGAGTGTGATTACCTCCTTTCACTAAGAGCATGTTTGAGGTACACTTTTTGAAATAGTGTTATATTTTGGTTTGAATAACTAGTGTTTAAGAGCTATAATTGGAGGGCTTGTAAAAGTTTAGATTATTGCTTCATCAGGAAAAAAAAGGTTTAGATTATGGTGAGTTTGAAGTCACTATTTGCAAGCCAAATTTTTCTTAAGAACGTCTTTGGGTTGTTCTATAAAACAAGTCATCCATAAAAACAAACTGAAATTGTGTTAGACAAATAGAAAATTGTTGTTTAAAAAAGCTCTCAAATATCTCTAACTGTTTTCTAAACAATTGTTTTAATCTTTTGAAATAAAAATTCAATAAAGTCATATTTGAATTATTGTTTTCGGTGATTCCTTTTTCTTAATAATAACCTTTAAAACATCATTCAATCTTAATTCTTCAAGTGGTTTTGTTATTTTCCCATCAAAAAGACGTTTTGAAAACAAAGTCAATAAATTGTGTAAAAAAATTTCCAAACAAGCCTTGAATATCATCCACATATATTGCTTGAGGTAGATGTGTTTCAAACTTCCAACATGCTTCCTCCCTCCCCTTCCCTTCCGAATTTCTTGAAGAACCATACAAAAGTATCCAAGCTATTGCAAAAAGCTTAATTGGTTCGCTTATACCTGTGAAGGTAAATAACTTCTACAATTGCCCATAATTTTATTCATTTATAGTTTTGCAAAAAGTTTGTTTTGAGCTTCATAACTAAACTTTTATGAAATATGTTTATGTATATTTATAGGCTTCATAACTAAACTCTTGTGTATCTTTCTTTGTTACTCGAAGGCTCAATTAGTGAAGATCAAAATCAACTCTCTTTGGTCGATGTTATCTTGACGGCTTTGAGGAGATTCTAAGCTCTGTTTCACGTGTCAAGTGAGAAGTTTGCTCTGTTTTTGGTGGTTGGGTTTTAATCTTGGCTTTTTCTAGTTCAATGTGTTTTGTTGGGTAGTTGTTTTATTAGCTTAAGTTTGAGATTTTTGGTTTGGGAGTTTCTAAGTGGTTGTTTTTGCCATTGAATGGAGCTCATGGTGAGACTTGAACCTTGGCCTTTTATCCTTTATGAAATTTGGGTAAATGTATGAGTTTTCTTTGGTTAGAAAGCATGCTAATGGTTGTGTTCTGAATCCATCTTATGCGGGTAAAAAATTATTATTTTCTTTACCTCTCTTCAAACATGGTATGGTGTGACTTTCTTCAATGACTGGAGGTCTCTCATAAACTGCATGTCAAGAGAATAAGAGAAACACTTTATTTTGCACTTCTCCTACAGGTTCTGAATAATAAGAAGCCAACTTCTATAACTTTATTTTCTTACTGGTGCAATTCATCAAGTTGCTTCAAATCTCTCTCTTTCAATATAATTTATTTGGGAATACTTTTGCTTGTAGGATATATCATTTTTTGACAGTGAAACTGTTGGTGACCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCTAG

mRNA sequence

ATGAGTGGGATGGATCCAATACAAGAGACGACTTGTGAATTCTCAATTGTGAATGAGAAACTCTTTTTGGCCACTTTAAGGTCAGGAGGGAGATACCCTGTTCTTCCATTTGGAATCAGATGTAATGAGAAGATTGCTTGCTATCTCACCCTTAGAGGTGAGATGGTGATGCAAATTTTGGAATGTGGGTTGAAGGTTAAGGAGTACGAGTTGCATCACAGGAACTTCAGTGACATTGGATGCTTTGGCTTGGTATTCAGGAGCACATCGATTTTGGAATCTAAATGTGTTTCAAACTTCCAACATGCTTCCTCCCTCCCCTTCCCTTCCGAATTTCTTGAAGAACCATACAAAAGTATCCAAGCTATTGCAAAAAGCTTAATTGGTTCGCTTATACCTGTGAAGGATATATCATTTTTTGACAGTGAAACTGTTGGTGACCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCTAG

Coding sequence (CDS)

ATGAGTGGGATGGATCCAATACAAGAGACGACTTGTGAATTCTCAATTGTGAATGAGAAACTCTTTTTGGCCACTTTAAGGTCAGGAGGGAGATACCCTGTTCTTCCATTTGGAATCAGATGTAATGAGAAGATTGCTTGCTATCTCACCCTTAGAGGTGAGATGGTGATGCAAATTTTGGAATGTGGGTTGAAGGTTAAGGAGTACGAGTTGCATCACAGGAACTTCAGTGACATTGGATGCTTTGGCTTGGTATTCAGGAGCACATCGATTTTGGAATCTAAATGTGTTTCAAACTTCCAACATGCTTCCTCCCTCCCCTTCCCTTCCGAATTTCTTGAAGAACCATACAAAAGTATCCAAGCTATTGCAAAAAGCTTAATTGGTTCGCTTATACCTGTGAAGGATATATCATTTTTTGACAGTGAAACTGTTGGTGACCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCTAG

Protein sequence

MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVSNFQHASSLPFPSEFLEEPYKSIQAIAKSLIGSLIPVKDISFFDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNIL
Homology
[Close]
BLAST of Spg030287 vs. NCBI nr
Match: PWZ05928.1 (60S ribosomal protein L11 [Zea mays])

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-15
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1   MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQIL 60
           ++ MDP  + T   S++ +    + + S  RY V  FGIR NEKIACY+T+RGE  MQ+L
Sbjct: 96  ITSMDPF-KFTISISVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLL 155

Query: 61  ECGLKVKEYELHHRNFSDIGCFG 84
           E GLKVKEYEL  RNFSD GCFG
Sbjct: 156 ESGLKVKEYELLRRNFSDTGCFG 177

[Close]
BLAST of Spg030287 vs. NCBI nr
Match: CAD6255838.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-15
Identity = 51/100 (51.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFR 87
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +
Sbjct: 82  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQ 141

Query: 88  STSILESKCVSNFQHASSLPFPSEFLEEPYKSIQAIAKSL 128
               L  KC         L F +E L   YK  + + K +
Sbjct: 142 EHIDLGIKC---------LLFKAELLHGEYKLQKDVRKQV 172

[Close]
BLAST of Spg030287 vs. NCBI nr
Match: CAD6255848.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-15
Identity = 51/100 (51.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFR 87
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +
Sbjct: 82  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQ 141

Query: 88  STSILESKCVSNFQHASSLPFPSEFLEEPYKSIQAIAKSL 128
               L  KC         L F +E L   YK  + + K +
Sbjct: 142 EHIDLGIKC---------LLFKAELLHGEYKLQKDVRKQV 172

[Close]
BLAST of Spg030287 vs. NCBI nr
Match: ADR71243.1 (60S ribosomal protein L11A [Hevea brasiliensis])

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-15
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 24 ATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 83
          A + S  RY V  FGIRCNEKIACY+T+RG+  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 36 APVFSKARYTVRSFGIRCNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFG 95

[Close]
BLAST of Spg030287 vs. NCBI nr
Match: AAD21733.1 (60S ribosomal protein L11B [Arabidopsis thaliana])

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-15
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 0 

Query: 14  FSIVNEKLFLAT-LRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELH 73
           FS+V E+L   T + S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL 
Sbjct: 35  FSVVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELL 94

Query: 74  HRNFSDIGCFG 84
            RNFSD GCFG
Sbjct: 95  RRNFSDTGCFG 105

[Close]
BLAST of Spg030287 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg030287 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg030287 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-16
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RG+  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg030287 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-16
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFS+ GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFG 105

[Close]
BLAST of Spg030287 vs. ExPASy Swiss-Prot
Match: Q0DK10 (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-16
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFS+ GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFG 105

[Close]
BLAST of Spg030287 vs. ExPASy TrEMBL
Match: A0A3L6DC45 (60S ribosomal protein L11 OS=Zea mays OX=4577 GN=RPL11_10 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 1   MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQIL 60
           ++ MDP  + T   S++ +    + + S  RY V  FGIR NEKIACY+T+RGE  MQ+L
Sbjct: 96  ITSMDPF-KFTISISVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLL 155

Query: 61  ECGLKVKEYELHHRNFSDIGCFG 84
           E GLKVKEYEL  RNFSD GCFG
Sbjct: 156 ESGLKVKEYELLRRNFSDTGCFG 177

[Close]
BLAST of Spg030287 vs. ExPASy TrEMBL
Match: I3NMK6 (60S ribosomal protein L11A OS=Hevea brasiliensis OX=3981 GN=RPL11A PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 24 ATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 83
          A + S  RY V  FGIRCNEKIACY+T+RG+  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 36 APVFSKARYTVRSFGIRCNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFG 95

[Close]
BLAST of Spg030287 vs. ExPASy TrEMBL
Match: A0A0D2UN47 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G161300 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 48/95 (50.53%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFR 87
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQ 109

Query: 88  STSILESKCVS--NFQHASSLPFPSEFLEEPYKSI 121
               L  KC S    QH  +     ++ +  Y+ +
Sbjct: 110 EHIDLGIKCKSRVGIQHRVTKEDAMKWFQVKYEGV 144

[Close]
BLAST of Spg030287 vs. ExPASy TrEMBL
Match: A0A2I0IJY7 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_035595 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 48/95 (50.53%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFR 87
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQ 109

Query: 88  STSILESKCVS--NFQHASSLPFPSEFLEEPYKSI 121
               L  KC S    QH  +     ++ +  Y+ +
Sbjct: 110 EHIDLGIKCKSRVGIQHRVTKEDAMKWFQVKYEGV 144

[Close]
BLAST of Spg030287 vs. ExPASy TrEMBL
Match: A0A446N949 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G051820 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.4e-15
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFR 87
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTIRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQ 109

Query: 88  STSILESKC 97
               L  KC
Sbjct: 110 EHIDLGMKC 118

[Close]
BLAST of Spg030287 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 87.8 bits (216), Expect = 9.3e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg030287 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.3e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg030287 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 87.8 bits (216), Expect = 9.3e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg030287 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.3e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28 SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
          S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 40 SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 95

[Close]
BLAST of Spg030287 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.3e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

The following BLAST results are available for this feature:
BLAST of Spg030287 vs. NCBI nr
Match NameE-valueIdentityDescription
PWZ05928.12.4e-1555.4260S ribosomal protein L11 [Zea mays][more]
CAD6255838.12.4e-1551.00unnamed protein product [Miscanthus lutarioriparius][more]
CAD6255848.12.4e-1551.00unnamed protein product [Miscanthus lutarioriparius][more]
ADR71243.15.3e-1570.0060S ribosomal protein L11A [Hevea brasiliensis][more]
AAD21733.15.3e-1566.2060S ribosomal protein L11B [Arabidopsis thaliana][more]
BLAST of Spg030287 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427951.3e-1673.2160S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2[more]
P427941.3e-1673.2160S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2[more]
P462872.9e-1671.4360S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1[more]
A2YDY23.8e-1671.4360S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S... [more]
Q0DK103.8e-1671.4360S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2... [more]
BLAST of Spg030287 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3L6DC451.2e-1555.4260S ribosomal protein L11 OS=Zea mays OX=4577 GN=RPL11_10 PE=3 SV=1[more]
I3NMK62.6e-1570.0060S ribosomal protein L11A OS=Hevea brasiliensis OX=3981 GN=RPL11A PE=2 SV=1[more]
A0A0D2UN473.4e-1550.53Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G161300 PE=3 ... [more]
A0A2I0IJY73.4e-1550.53Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_035595 PE=3 SV=1[more]
A0A446N9494.4e-1563.77Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G... [more]
BLAST of Spg030287 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G42740.19.3e-1873.21ribosomal protein large subunit 16A [more]
AT3G58700.19.3e-1873.21Ribosomal L5P family protein [more]
AT4G18730.19.3e-1873.21ribosomal protein L16B [more]
AT5G45775.19.3e-1873.21Ribosomal L5P family protein [more]
AT5G45775.29.3e-1873.21Ribosomal L5P family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036640ABC transporter type 1, transmembrane domain superfamilyGENE3D1.20.1560.10ABC transporter type 1, transmembrane domaincoord: 118..175
e-value: 1.2E-6
score: 29.8
IPR036640ABC transporter type 1, transmembrane domain superfamilySUPERFAMILY90123ABC transporter transmembrane regioncoord: 136..175
IPR022803Ribosomal protein L5 domain superfamilyGENE3D3.30.1440.10coord: 20..103
e-value: 5.2E-12
score: 47.7
IPR022803Ribosomal protein L5 domain superfamilySUPERFAMILY55282RL5-likecoord: 30..92
IPR002132Ribosomal protein L5PANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 26..88
NoneNo IPR availablePANTHERPTHR11994:SF20SUBFAMILY NOT NAMEDcoord: 26..88
IPR011527ABC transporter type 1, transmembrane domainPROSITEPS50929ABC_TM1Fcoord: 136..175
score: 9.974744

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030287.1Spg030287.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0055085 transmembrane transport
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0140359 ABC-type transporter activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome