Spg030203 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030203
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DUF1682 domain-containing protein
Location	scaffold6: 13905582 .. 13906091 (-)
RNA-Seq Expression	Spg030203
Synteny	Spg030203

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCTCACCTCCCTCTGGATCTCCTTCTTCCTTCTCTCTCTCCTCTTTCCCTCTCGTGTTCTTTCCGATTCCTACTTCGAAGTATTCGAACCGGAACTCGACGACCTCGAAGATGACGATCTTTCTCTTCCGCTCACCGATCTCCCCCTCCGTCCCCCTCCTCTCACCCAGTCGGACCCCGAACCTGCCGGAATTTCCTCGCCGGATTTCGATTCTGATGCACCGGATCCGACAGGCGAGGCAACGGATCCTCAATCTCCACCCTCCGTCTCCGATTCTCCGAAGCCCTCCCGACCAGCTTCAATTACTGGGACGAGGACGAATTCGAAGGTTTTCCGATTGAACAACCACAAGAACCACCCGCACAACAGAGCTCTAAATCAGCGGAGGATTCTGCCTCCACCAACCCGAACAATGATCCGAAACCTACCTCTCCGATTCCCAAAACTGCGAATGCTCCGAAGTCGTATACTGTTGAGATTGCTTGCGGGTCTTTCTTGGTGA

mRNA sequence

ATGGCCAAGCTCACCTCCCTCTGGATCTCCTTCTTCCTTCTCTCTCTCCTCTTTCCCTCTCGTGTTCTTTCCGATTCCTACTTCGAAGTATTCGAACCGGAACTCGACGACCTCGAAGATGACGATCTTTCTCTTCCGCTCACCGATCTCCCCCTCCGTCCCCCTCCTCTCACCCAGTCGGACCCCGAACCTGCCGGAATTTCCTCGCCGGATTTCGATTCTGATGCACCGGATCCGACAGGCGAGGCAACGGATCCTCAATCTCCACCCTCCGTCTCCGATTCTCCGAAGCCCTCCCGACCAGCTTCAATTACTGGGACGAGGACGAATTCGAAGGTTTTCCGATTGAACAACCACAAGAACCACCCGCACAACAGAGCTCTAAATCAGCGGAGGATTCTGCCTCCACCAACCCGAACAATGATCCGAAACCTACCTCTCCGATTCCCAAAACTGCGAATGCTCCGAAGTCGTATACTGTTGAGATTGCTTGCGGGTCTTTCTTGGTGA

Coding sequence (CDS)

ATGGCCAAGCTCACCTCCCTCTGGATCTCCTTCTTCCTTCTCTCTCTCCTCTTTCCCTCTCGTGTTCTTTCCGATTCCTACTTCGAAGTATTCGAACCGGAACTCGACGACCTCGAAGATGACGATCTTTCTCTTCCGCTCACCGATCTCCCCCTCCGTCCCCCTCCTCTCACCCAGTCGGACCCCGAACCTGCCGGAATTTCCTCGCCGGATTTCGATTCTGATGCACCGGATCCGACAGGCGAGGCAACGGATCCTCAATCTCCACCCTCCGTCTCCGATTCTCCGAAGCCCTCCCGACCAGCTTCAATTACTGGGACGAGGACGAATTCGAAGGTTTTCCGATTGAACAACCACAAGAACCACCCGCACAACAGAGCTCTAAATCAGCGGAGGATTCTGCCTCCACCAACCCGAACAATGATCCGAAACCTACCTCTCCGATTCCCAAAACTGCGAATGCTCCGAAGTCGTATACTGTTGAGATTGCTTGCGGGTCTTTCTTGGTGA

Protein sequence

MAKLTSLWISFFLLSLLFPSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPPLTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPSRPASITGTRTNSKVFRLNNHKNHPHNRALNQRRILPPPTRTMIRNLPLRFPKLRMLRSRILLRLLAGLSW

Homology

[Close]

BLAST of Spg030203 vs. NCBI nr
Match: XP_038904691.1 (uncharacterized protein At5g49945 [Benincasa hispida])

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-29
Identity = 82/103 (79.61%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLF----PSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           MAKLT L+ISF L SLLF    PS VL+ S+FE FEPELDDLEDDDLSLPLTDLPLRPPP
Sbjct: 1   MAKLTFLFISFSLFSLLFLFLSPSYVLAGSHFEGFEPELDDLEDDDLSLPLTDLPLRPPP 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LTQS+PEPA ISSPD DSDAPDP  E +D QSPPSVSDSPKPS
Sbjct: 61  LTQSEPEPAVISSPDRDSDAPDPVTEPSDRQSPPSVSDSPKPS 103

[Close]

BLAST of Spg030203 vs. NCBI nr
Match: XP_008452256.1 (PREDICTED: uncharacterized protein At5g49945-like [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 4.8e-29
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLF----PSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           MAKLTSL I   LLSLL     PS VL+DS+FE FEPELDDLEDDDLSLPLTDLPLRPPP
Sbjct: 1   MAKLTSLLIFSSLLSLLLLSLSPSYVLADSHFEGFEPELDDLEDDDLSLPLTDLPLRPPP 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LTQS+PEPAGISS D DSDAPDP  E +DPQSPPSVSD PKPS
Sbjct: 61  LTQSEPEPAGISSLDRDSDAPDPVAEPSDPQSPPSVSDFPKPS 103

[Close]

BLAST of Spg030203 vs. NCBI nr
Match: KAA0060630.1 (DUF1682 domain-containing protein [Cucumis melo var. makuwa] >TYK02243.1 DUF1682 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 4.8e-29
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLF----PSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           MAKLTSL I   LLSLL     PS VL+DS+FE FEPELDDLEDDDLSLPLTDLPLRPPP
Sbjct: 1   MAKLTSLLIFSSLLSLLLLSLSPSYVLADSHFEGFEPELDDLEDDDLSLPLTDLPLRPPP 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LTQS+PEPAGISS D DSDAPDP  E +DPQSPPSVSD PKPS
Sbjct: 61  LTQSEPEPAGISSLDRDSDAPDPVAEPSDPQSPPSVSDFPKPS 103

[Close]

BLAST of Spg030203 vs. NCBI nr
Match: XP_022984749.1 (uncharacterized protein At5g49945-like [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 3.1e-28
Identity = 80/103 (77.67%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLF----PSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           M KL SL ISFFLLSLLF    PS VL+D +FE FEPE+DDLEDDDLSLPLTDLPLR   
Sbjct: 1   MVKLFSLCISFFLLSLLFLSLSPSYVLADPHFEGFEPEIDDLEDDDLSLPLTDLPLRSSL 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LT+SDPEPAGISSPD DSD PDP  E  DPQSPPSVSDSPKPS
Sbjct: 61  LTKSDPEPAGISSPDRDSDVPDPVDEPLDPQSPPSVSDSPKPS 103

[Close]

BLAST of Spg030203 vs. NCBI nr
Match: XP_022136553.1 (uncharacterized protein At5g49945 [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 6.9e-28
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLFP----SRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           MAK TSLWISFFLLSLLF     S V++DS+FE FEPELDD EDD++SLPLT LPLRPPP
Sbjct: 1   MAKPTSLWISFFLLSLLFASLSHSYVVADSHFEGFEPELDDFEDDEISLPLTHLPLRPPP 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LTQS+P+PAGISS D DSDA DP  E +DP SP SVSDSPKPS
Sbjct: 61  LTQSEPQPAGISSQDHDSDAQDPVDEPSDPPSPQSVSDSPKPS 103

[Close]

BLAST of Spg030203 vs. ExPASy TrEMBL
Match: A0A5D3BRF7 (DUF1682 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00420 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.3e-29
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLF----PSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           MAKLTSL I   LLSLL     PS VL+DS+FE FEPELDDLEDDDLSLPLTDLPLRPPP
Sbjct: 1   MAKLTSLLIFSSLLSLLLLSLSPSYVLADSHFEGFEPELDDLEDDDLSLPLTDLPLRPPP 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LTQS+PEPAGISS D DSDAPDP  E +DPQSPPSVSD PKPS
Sbjct: 61  LTQSEPEPAGISSLDRDSDAPDPVAEPSDPQSPPSVSDFPKPS 103

[Close]

BLAST of Spg030203 vs. ExPASy TrEMBL
Match: A0A1S3BTG6 (uncharacterized protein At5g49945-like OS=Cucumis melo OX=3656 GN=LOC103493328 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.3e-29
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLF----PSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           MAKLTSL I   LLSLL     PS VL+DS+FE FEPELDDLEDDDLSLPLTDLPLRPPP
Sbjct: 1   MAKLTSLLIFSSLLSLLLLSLSPSYVLADSHFEGFEPELDDLEDDDLSLPLTDLPLRPPP 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LTQS+PEPAGISS D DSDAPDP  E +DPQSPPSVSD PKPS
Sbjct: 61  LTQSEPEPAGISSLDRDSDAPDPVAEPSDPQSPPSVSDFPKPS 103

[Close]

BLAST of Spg030203 vs. ExPASy TrEMBL
Match: A0A6J1JBF7 (uncharacterized protein At5g49945-like OS=Cucurbita maxima OX=3661 GN=LOC111482934 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-28
Identity = 80/103 (77.67%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLF----PSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           M KL SL ISFFLLSLLF    PS VL+D +FE FEPE+DDLEDDDLSLPLTDLPLR   
Sbjct: 1   MVKLFSLCISFFLLSLLFLSLSPSYVLADPHFEGFEPEIDDLEDDDLSLPLTDLPLRSSL 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LT+SDPEPAGISSPD DSD PDP  E  DPQSPPSVSDSPKPS
Sbjct: 61  LTKSDPEPAGISSPDRDSDVPDPVDEPLDPQSPPSVSDSPKPS 103

[Close]

BLAST of Spg030203 vs. ExPASy TrEMBL
Match: A0A6J1C7W3 (uncharacterized protein At5g49945 OS=Momordica charantia OX=3673 GN=LOC111008227 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLFP----SRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPP 60
           MAK TSLWISFFLLSLLF     S V++DS+FE FEPELDD EDD++SLPLT LPLRPPP
Sbjct: 1   MAKPTSLWISFFLLSLLFASLSHSYVVADSHFEGFEPELDDFEDDEISLPLTHLPLRPPP 60

Query: 61  LTQSDPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           LTQS+P+PAGISS D DSDA DP  E +DP SP SVSDSPKPS
Sbjct: 61  LTQSEPQPAGISSQDHDSDAQDPVDEPSDPPSPQSVSDSPKPS 103

[Close]

BLAST of Spg030203 vs. ExPASy TrEMBL
Match: A0A6J1ENL7 (uncharacterized protein At5g49945 OS=Cucurbita moschata OX=3662 GN=LOC111435978 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.7e-28
Identity = 79/99 (79.80%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MAKLTSLWISFFLLSLLFPSRVLSDSYFEVFEPELDDLEDDDLSLPLTDLPLRPPPLTQS 60
           MAKL SL+ISFFLLSL   S VL+DS+FE FEPE+DDLEDDDLSLPLTDLPLRP  LT+S
Sbjct: 1   MAKLFSLFISFFLLSLSL-SYVLADSHFEGFEPEIDDLEDDDLSLPLTDLPLRPSLLTKS 60

Query: 61  DPEPAGISSPDFDSDAPDPTGEATDPQSPPSVSDSPKPS 100
           DPEPAGISSPD DSD PDP  E  DPQSPPSVSDS KPS
Sbjct: 61  DPEPAGISSPDRDSDVPDPVDEPLDPQSPPSVSDSAKPS 98

The following BLAST results are available for this feature:

BLAST of Spg030203 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904691.1	2.8e-29	79.61	uncharacterized protein At5g49945 [Benincasa hispida]	[more]
XP_008452256.1	4.8e-29	79.61	PREDICTED: uncharacterized protein At5g49945-like [Cucumis melo]	[more]
KAA0060630.1	4.8e-29	79.61	DUF1682 domain-containing protein [Cucumis melo var. makuwa] >TYK02243.1 DUF1682...	[more]
XP_022984749.1	3.1e-28	77.67	uncharacterized protein At5g49945-like [Cucurbita maxima]	[more]
XP_022136553.1	6.9e-28	74.76	uncharacterized protein At5g49945 [Momordica charantia]	[more]

BLAST of Spg030203 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030203 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRF7	2.3e-29	79.61	DUF1682 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BTG6	2.3e-29	79.61	uncharacterized protein At5g49945-like OS=Cucumis melo OX=3656 GN=LOC103493328 P...	[more]
A0A6J1JBF7	1.5e-28	77.67	uncharacterized protein At5g49945-like OS=Cucurbita maxima OX=3661 GN=LOC1114829...	[more]
A0A6J1C7W3	3.3e-28	74.76	uncharacterized protein At5g49945 OS=Momordica charantia OX=3673 GN=LOC111008227...	[more]
A0A6J1ENL7	5.7e-28	79.80	uncharacterized protein At5g49945 OS=Cucurbita moschata OX=3662 GN=LOC111435978 ...	[more]

BLAST of Spg030203 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030203.1	Spg030203.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
biological_process	GO:0036503	ERAD pathway
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005509	calcium ion binding