Spg030187 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030187
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	peptidyl-prolyl cis-trans isomerase CYP40
Location	scaffold6: 13918363 .. 13920296 (+)
RNA-Seq Expression	Spg030187
Synteny	Spg030187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAGCCAAGGTGCTTCTTAGAAGGAATCAACATAGGCAGAGAACTTGAAGGAAGAATCATTGTCGAGCTTTGCTACGATGTCGTTCCTAAAACCATCAAGAATTCCGGGCACTTTTCACCGGCGAGAAAGGAATTGCTCCCAACACTGGCATCTCGCTCCATTTCAAGGTCCTAACGAATGTCTTTTTTGGTTTTTTTTTTTTTCCGTTTTTCATTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAAGTTGAAGCACATTGTGTGATTTATTAGTTGAAGAGGTTTCTGAGAGATGAAGCAGGGTCTCGTAGTTCTGATGATTTGTGTTGTTTGGTCAAACGTATGTCTTCGAGACTTGAGGGGACTTTTGCTTTTAGTAGCTAGTGATATCCTCGGTAAATGTTGGATTATTATTGTTTTTTCCTTTCCTACTTTTGAGGTTTTTTCGTTGTAGTGTGCTTAACCTATGTTTGTTTACTCTCTCATAGGTTAATAAGGACTGACATGTTTTCCTTCCACTTTACTTTGTTCTTTTGTGGATTTGGATGTTGATTCCATTTAACAATACATAGCTGGAGAAAGAAAAATAATTACCAAGTCATATGACACTAAAGATAGTAGGCCCTTCTCTAAAAGTTCAGGGATAAAATTTGTATCTACAAAAACATATTATATATGAACTTATAGAGAAGGCTTACTATCTTTTTTTGGCTGGGATAAGATGTGGTATTTTCTCCTAATTGTGATTTAATAGAAGATGAACATGTTTTGCTTACGTGTATTTCTTTGTTTATCAAATGGAGAATGATTATAGAAATTGAGAACTGAAAAATGGTTGTTATGAAACTTTATTAATAAGACTGCTATTAAAAAGTTTGATTTTCTATAGTGATTTGATATCTGCAGGGATTAGTTAATCTAAATTAAAATTTTTCTTTTGGTTAATGAAATATCTTCGTTTTATTTGATTTTTCATGGTGAAAAGCACCTTCAACCTAACATTTCAAGTGGCCTTCCAAGATGCAAGTGTCTGTGAAAAGCTTTTATCATCTCAATTTAAGGGCAAATCTAGAAATAGTATCATTCATTAATGTGCAAGGTTAACTAAGTAAGCTTTTGTGGTTAGGCGTGTCTCATTCATGTGCATTTTTTTTTTAATTTCCTTGATTCTTTTGGTTGATAGAGTTGACTATGCTACATTTTCCCTCAATCTCATAAAGATGGTTCTCCTCTGTCTTTGACTCTTTCGTCTTCCTGGTTAACGCTTTTTCATCCTTTCATCAGACAAGTTGCAACAATTCTATTATTTTCCCCTACCTAATTTTATTTTAACAATGTTATATTAAGTCTCAATTTCATAGTCTTTACCTTCACGTATTTTGGTTGGTTAATGAGGCTTGGCACATAGGTTTGTTACATATTCTAGAAGGCACAAATTCATTTTCTTTCAAGCATGATTATGTAGAGTTCTTTTATCTTATATATGAAGTTACATTTGTTTAAACTTTTAGGGTTTTTGCTTTCAATGCAGTCATGTTATCCTTTTTTCATTTGCAGGCTTGTAAATTGAAGCTAGGGGATCTAAAAGGAGCATTATTGGACATTGAATCTGCAATGAGCGAGGGGTATAATGATGTAAAAGTCATGTTCCGCCTGGGTCGGGTTGGTATCTTTCATTGATGAGGATTGTAGTGAATAAGAGTCTTGGAATATCTAAATGTTTATCCGTGCAAAGATTGCTTGTTGGATGAGATTTCCACCGGCGATATATATATATATATATATAATTAATTAATTTCTTCTATTTTCTTGTGGCTAACCCTCTCATATATCAGGCTTATATGGCTCTTAATGACATTGATGCTGCAGTTGAAAGCTTTAAAAAGGAATTGGATTTGGAGCCAAATGATGGCGAGGCATGA

mRNA sequence

ATGGGCAAGCCAAGGTGCTTCTTAGAAGGAATCAACATAGGCAGAGAACTTGAAGGAAGAATCATTGTCGAGCTTTGCTACGATGCTTGTAAATTGAAGCTAGGGGATCTAAAAGGAGCATTATTGGACATTGAATCTGCAATGAGCGAGGGGTATAATGATGTAAAAGTCATGTTCCGCCTGGGTCGGGCTTATATGGCTCTTAATGACATTGATGCTGCAGTTGAAAGCTTTAAAAAGGAATTGGATTTGGAGCCAAATGATGGCGAGGCATGA

Coding sequence (CDS)

ATGGGCAAGCCAAGGTGCTTCTTAGAAGGAATCAACATAGGCAGAGAACTTGAAGGAAGAATCATTGTCGAGCTTTGCTACGATGCTTGTAAATTGAAGCTAGGGGATCTAAAAGGAGCATTATTGGACATTGAATCTGCAATGAGCGAGGGGTATAATGATGTAAAAGTCATGTTCCGCCTGGGTCGGGCTTATATGGCTCTTAATGACATTGATGCTGCAGTTGAAAGCTTTAAAAAGGAATTGGATTTGGAGCCAAATGATGGCGAGGCATGA

Protein sequence

MGKPRCFLEGINIGRELEGRIIVELCYDACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPNDGEA

Homology

[Close]

BLAST of Spg030187 vs. NCBI nr
Match: XP_022148683.1 (peptidyl-prolyl cis-trans isomerase CYP40 [Momordica charantia] >XP_022148684.1 peptidyl-prolyl cis-trans isomerase CYP40 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 4.6e-18
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLKLGDLKGALLD E AM EG N+VK MFR G+AYMALNDIDAAVESFKK LDLEPND
Sbjct: 272 ACKLKLGDLKGALLDTEFAMREGDNNVKAMFRQGQAYMALNDIDAAVESFKKALDLEPND 331

[Close]

BLAST of Spg030187 vs. NCBI nr
Match: XP_042493106.1 (peptidyl-prolyl cis-trans isomerase CYP40-like [Macadamia integrifolia])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLKLGDLKGALLD + AM +G N+VK +FR G+AYMALND+DAAVESFKK LDLEPND
Sbjct: 272 ACKLKLGDLKGALLDTDFAMRDGENNVKALFRQGQAYMALNDVDAAVESFKKALDLEPND 331

Query: 89  G 90
           G
Sbjct: 332 G 332

[Close]

BLAST of Spg030187 vs. NCBI nr
Match: KAG6709635.1 (hypothetical protein I3842_06G142700 [Carya illinoinensis] >KAG7976154.1 hypothetical protein I3843_06G135500 [Carya illinoinensis])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLK GDLKGALLD E AM +G N+VK +FR G+AYMALND+DAAVESFKK LDLEPND
Sbjct: 271 ACKLKFGDLKGALLDTEFAMRDGDNNVKALFRQGQAYMALNDVDAAVESFKKALDLEPND 330

Query: 89  G 90
           G
Sbjct: 331 G 331

[Close]

BLAST of Spg030187 vs. NCBI nr
Match: XP_042983940.1 (peptidyl-prolyl cis-trans isomerase CYP40-like [Carya illinoinensis] >KAG2703565.1 hypothetical protein I3760_06G144300 [Carya illinoinensis] >KAG6651853.1 hypothetical protein CIPAW_06G142000 [Carya illinoinensis])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLK GDLKGALLD E AM +G N+VK +FR G+AYMALND+DAAVESFKK LDLEPND
Sbjct: 271 ACKLKFGDLKGALLDTEFAMRDGDNNVKALFRQGQAYMALNDVDAAVESFKKALDLEPND 330

Query: 89  G 90
           G
Sbjct: 331 G 331

[Close]

BLAST of Spg030187 vs. NCBI nr
Match: KAG2703564.1 (hypothetical protein I3760_06G144300 [Carya illinoinensis])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLK GDLKGALLD E AM +G N+VK +FR G+AYMALND+DAAVESFKK LDLEPND
Sbjct: 203 ACKLKFGDLKGALLDTEFAMRDGDNNVKALFRQGQAYMALNDVDAAVESFKKALDLEPND 262

Query: 89  G 90
           G
Sbjct: 263 G 263

[Close]

BLAST of Spg030187 vs. ExPASy Swiss-Prot
Match: Q9C566 (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana OX=3702 GN=CYP40 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.4e-15
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLK GD KGALLD E AM +  N+VK +FR G+AYMALN++DAA ES +K L  EPND
Sbjct: 272 ACKLKFGDAKGALLDTEFAMRDEDNNVKALFRQGQAYMALNNVDAAAESLEKALQFEPND 331

[Close]

BLAST of Spg030187 vs. ExPASy Swiss-Prot
Match: Q58208 (TPR repeat-containing protein MJ0798 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0798 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.6e-04
Identity = 26/86 (30.23%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 6   CFLEGINIGRELEGRIIVELCYDACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAY 65
           C+ + + + +  E  ++ +  Y   KL   DL  A+   E A  +  N+ K +F LG++Y
Sbjct: 124 CYNKALELNQNTE--LLCKKGYALLKLYKRDL--AIKYFEKASEKDRNNYKALFGLGKSY 183

Query: 66  MALNDIDAAVESFKKELDLEPNDGEA 92
             ++D   +++ F+K L+L PND EA
Sbjct: 184 YLMSDNKNSIKYFEKVLELNPNDVEA 205

[Close]

BLAST of Spg030187 vs. ExPASy TrEMBL
Match: A0A6J1D4S1 (peptidyl-prolyl cis-trans isomerase CYP40 OS=Momordica charantia OX=3673 GN=LOC111017281 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLKLGDLKGALLD E AM EG N+VK MFR G+AYMALNDIDAAVESFKK LDLEPND
Sbjct: 272 ACKLKLGDLKGALLDTEFAMREGDNNVKAMFRQGQAYMALNDIDAAVESFKKALDLEPND 331

[Close]

BLAST of Spg030187 vs. ExPASy TrEMBL
Match: A0A1R3HVD2 (Tetratricopeptide TPR-1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_16928 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLKLGDLKGALLD E AM +G N+VK +FR G+AYMALND+DAAVESFKK L LEPND
Sbjct: 272 ACKLKLGDLKGALLDTEFAMRDGDNNVKALFRQGQAYMALNDVDAAVESFKKALQLEPND 331

Query: 89  G 90
           G
Sbjct: 332 G 332

[Close]

BLAST of Spg030187 vs. ExPASy TrEMBL
Match: A0A1R3K3H3 (Tetratricopeptide TPR-1 OS=Corchorus olitorius OX=93759 GN=COLO4_11717 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLKLGDLKGALLD E AM +G N+VK +FR G+AYMALND+DAAVESFKK L LEPND
Sbjct: 204 ACKLKLGDLKGALLDTEFAMRDGDNNVKALFRQGQAYMALNDVDAAVESFKKALQLEPND 263

Query: 89  G 90
           G
Sbjct: 264 G 264

[Close]

BLAST of Spg030187 vs. ExPASy TrEMBL
Match: A0A2P5BK61 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_231680 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLKLGDLKGALLD + AM +G N+VK +FR G+AYMALNDIDAAVESFKK LDLEPND
Sbjct: 272 ACKLKLGDLKGALLDTDFAMRDGENNVKALFRQGQAYMALNDIDAAVESFKKALDLEPND 331

[Close]

BLAST of Spg030187 vs. ExPASy TrEMBL
Match: A0A443PGV7 (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01907100 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLKLGDLKGALLD + AM EG ++VK +FR G+AYMALNDIDAAVESFKK L+LEPND
Sbjct: 272 ACKLKLGDLKGALLDTDFAMREGEDNVKALFRQGQAYMALNDIDAAVESFKKALELEPND 331

Query: 89  G 90
           G
Sbjct: 332 G 332

[Close]

BLAST of Spg030187 vs. TAIR 10
Match: AT2G15790.1 (peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase )

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-16
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 29  ACKLKLGDLKGALLDIESAMSEGYNDVKVMFRLGRAYMALNDIDAAVESFKKELDLEPND 88
           ACKLK GD KGALLD E AM +  N+VK +FR G+AYMALN++DAA ES +K L  EPND
Sbjct: 272 ACKLKFGDAKGALLDTEFAMRDEDNNVKALFRQGQAYMALNNVDAAAESLEKALQFEPND 331

The following BLAST results are available for this feature:

BLAST of Spg030187 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148683.1	4.6e-18	85.00	peptidyl-prolyl cis-trans isomerase CYP40 [Momordica charantia] >XP_022148684.1 ...	[more]
XP_042493106.1	1.0e-17	78.69	peptidyl-prolyl cis-trans isomerase CYP40-like [Macadamia integrifolia]	[more]
KAG6709635.1	1.7e-17	78.69	hypothetical protein I3842_06G142700 [Carya illinoinensis] >KAG7976154.1 hypothe...	[more]
XP_042983940.1	1.7e-17	78.69	peptidyl-prolyl cis-trans isomerase CYP40-like [Carya illinoinensis] >KAG2703565...	[more]
KAG2703564.1	1.7e-17	78.69	hypothetical protein I3760_06G144300 [Carya illinoinensis]	[more]

BLAST of Spg030187 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C566	8.4e-15	65.00	Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana OX=3702 GN=CYP...	[more]
Q58208	6.6e-04	30.23	TPR repeat-containing protein MJ0798 OS=Methanocaldococcus jannaschii (strain AT...	[more]

BLAST of Spg030187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4S1	2.2e-18	85.00	peptidyl-prolyl cis-trans isomerase CYP40 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A1R3HVD2	1.4e-17	78.69	Tetratricopeptide TPR-1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_16928 PE=4 ...	[more]
A0A1R3K3H3	1.4e-17	78.69	Tetratricopeptide TPR-1 OS=Corchorus olitorius OX=93759 GN=COLO4_11717 PE=4 SV=1	[more]
A0A2P5BK61	1.9e-17	80.00	Cyclophilin-type peptidyl-prolyl cis-trans isomerase OS=Parasponia andersonii OX...	[more]
A0A443PGV7	1.9e-17	78.69	Peptidyl-prolyl cis-trans isomerase CYP40 OS=Cinnamomum micranthum f. kanehirae ...	[more]

BLAST of Spg030187 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15790.1	5.9e-16	65.00	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 55..88 e-value: 2.3E-4 score: 30.5
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 56..88 e-value: 2.2E-6 score: 27.4
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 55..88 score: 13.5114
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 15..91 e-value: 1.4E-12 score: 49.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 29..91
None	No IPR available	PANTHER	PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 29..89 coord: 1..28
None	No IPR available	PANTHER	PTHR11071:SF483	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40	coord: 29..89 coord: 1..28
None	No IPR available	PROSITE	PS50293	TPR_REGION	coord: 55..88 score: 9.866906

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030187.1	Spg030187.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0010050	vegetative phase change
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016018	cyclosporin A binding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0005515	protein binding