Spg030139 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030139
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionABC-type Co2+ transport system
Locationscaffold6: 12871776 .. 12872432 (+)
RNA-Seq ExpressionSpg030139
SyntenySpg030139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGCAGTGAAATTGAGCGAAGAAGATGGGGAAGAAAAGTGGTCGAACTCGTCGGTCTTCAGTGACGGAGCTTCTGGAAACGCCGCCGTTAACGCCTCCTCCGGCCACCGATTCTCCAAAGTCAGCAATCAGATTAACAGCAAGGCAAGCAAATTTTCTTCACCGGAGAACACCAACATTGCGAAGAACAGAGTCGCCGCTGGTCTCTTGAAGTCGCCTTCTCGAAATGCTTCGAGTTTGAGCACTATATCCGATCTCAAGGATCTTGCGTCTTCACAACTCCTCGATCTCAAGCGCCTGATTGATCACTCTCACTCACAAATCGTCGAAGACCTTGAATCCTCAAACTCACGCCTGCAAAAGAGATTTAAGGTATCCATCTCTCTGTTTTATGATTTTGACGATGACTGCGAGTTGCTGCATCTACTTTTTTCTCTGCGATTTCCGTCTATTAAAATCCATAACTCGAGTTTGAGCTAGGTAAGAGGCAGTTATTTTGGTTGAAACCTTCTGAAATTAGTTCATAAATCACTGCGAATTTGCATTCACCATTCCAATACCGAAGATTCAATACGACAGTTGTGAAAATTTTCGACAACTTTGATTGTAACTTTGTATTTTTGCTTTCGCATTTGACAGCTTGCAAAACATCCATAA

mRNA sequence

CAAGCAGTGAAATTGAGCGAAGAAGATGGGGAAGAAAAGTGGTCGAACTCGTCGGTCTTCAGTGACGGAGCTTCTGGAAACGCCGCCGTTAACGCCTCCTCCGGCCACCGATTCTCCAAAGTCAGCAATCAGATTAACAGCAAGGCAAGCAAATTTTCTTCACCGGAGAACACCAACATTGCGAAGAACAGAGTCGCCGCTGGTCTCTTGAAGTCGCCTTCTCGAAATGCTTCGAGTTTGAGCACTATATCCGATCTCAAGGATCTTGCGTCTTCACAACTCCTCGATCTCAAGCGCCTGATTGATCACTCTCACTCACAAATCGTCGAAGACCTTGAATCCTCAAACTCACGCCTGCAAAAGAGATTTAAGCTTGCAAAACATCCATAA

Coding sequence (CDS)

CAAGCAGTGAAATTGAGCGAAGAAGATGGGGAAGAAAAGTGGTCGAACTCGTCGGTCTTCAGTGACGGAGCTTCTGGAAACGCCGCCGTTAACGCCTCCTCCGGCCACCGATTCTCCAAAGTCAGCAATCAGATTAACAGCAAGGCAAGCAAATTTTCTTCACCGGAGAACACCAACATTGCGAAGAACAGAGTCGCCGCTGGTCTCTTGAAGTCGCCTTCTCGAAATGCTTCGAGTTTGAGCACTATATCCGATCTCAAGGATCTTGCGTCTTCACAACTCCTCGATCTCAAGCGCCTGATTGATCACTCTCACTCACAAATCGTCGAAGACCTTGAATCCTCAAACTCACGCCTGCAAAAGAGATTTAAGCTTGCAAAACATCCATAA

Protein sequence

QAVKLSEEDGEEKWSNSSVFSDGASGNAAVNASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKLAKHP
Homology
BLAST of Spg030139 vs. NCBI nr
Match: XP_023532951.1 (uncharacterized protein LOC111794964 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-25
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0

Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +INS  SKFSSPENTN AKNRVAA L KS SRN SSLSTISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINSNVSKFSSPENTNTAKNRVAADLFKSFSRNISSLSTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL+DHSHSQIVEDLESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLVDHSHSQIVEDLESSNSRLQKRFKI 120

BLAST of Spg030139 vs. NCBI nr
Match: XP_022931189.1 (uncharacterized protein LOC111437446 isoform X1 [Cucurbita moschata])

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-25
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 0

Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKFSSPENTN AKNRVAAGL KS SRN SSL TISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFSSPENTNTAKNRVAAGLFKSSSRNISSLFTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL+DHSHSQIVED+ESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLVDHSHSQIVEDIESSNSRLQKRFKI 120

BLAST of Spg030139 vs. NCBI nr
Match: XP_022995633.1 (uncharacterized protein LOC111491109 [Cucurbita maxima])

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-25
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0

Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKF SPENTN AKNRVAAGL KS SRN SSLSTISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFPSPENTNTAKNRVAAGLFKSSSRNISSLSTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL DHSHSQIVEDLESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLFDHSHSQIVEDLESSNSRLQKRFKI 120

BLAST of Spg030139 vs. NCBI nr
Match: KAG6606288.1 (hypothetical protein SDJN03_03605, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-24
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 0

Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKFSSPENTN AKNRVAAGL KS SRN SSL TISDLKD+A
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFSSPENTNTAKNRVAAGLFKSSSRNISSLFTISDLKDVA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL+DHSHSQIVED+ESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLVDHSHSQIVEDIESSNSRLQKRFKI 120

BLAST of Spg030139 vs. NCBI nr
Match: XP_022963851.1 (uncharacterized protein LOC111464038 isoform X2 [Cucurbita moschata] >KAG6571615.1 hypothetical protein SDJN03_28343, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0

Query: 42  SNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLI 101
           + +INS  +KFSSPENTNI KNRV AGL KSPSRNASSLSTISDLKD A+SQLLDLKR I
Sbjct: 37  NRKINSNGNKFSSPENTNIVKNRVPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHI 96

Query: 102 DHSHSQIVEDLESSNSRLQKRFKL 126
           DHSHSQI++D ESS SRL+KRFK+
Sbjct: 97  DHSHSQIIKDHESSTSRLEKRFKI 120

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1K8J7 (uncharacterized protein LOC111491109 OS=Cucurbita maxima OX=3661 GN=LOC111491109 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0

Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKF SPENTN AKNRVAAGL KS SRN SSLSTISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFPSPENTNTAKNRVAAGLFKSSSRNISSLSTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL DHSHSQIVEDLESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLFDHSHSQIVEDLESSNSRLQKRFKI 120

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1ETM0 (uncharacterized protein LOC111437446 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437446 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 0

Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKFSSPENTN AKNRVAAGL KS SRN SSL TISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFSSPENTNTAKNRVAAGLFKSSSRNISSLFTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL+DHSHSQIVED+ESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLVDHSHSQIVEDIESSNSRLQKRFKI 120

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1HH77 (uncharacterized protein LOC111464038 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464038 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0

Query: 42  SNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLI 101
           + +INS  +KFSSPENTNI KNRV AGL KSPSRNASSLSTISDLKD A+SQLLDLKR I
Sbjct: 37  NRKINSNGNKFSSPENTNIVKNRVPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHI 96

Query: 102 DHSHSQIVEDLESSNSRLQKRFKL 126
           DHSHSQI++D ESS SRL+KRFK+
Sbjct: 97  DHSHSQIIKDHESSTSRLEKRFKI 120

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1HLD9 (uncharacterized protein LOC111464038 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464038 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0

Query: 42  SNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLI 101
           + +INS  +KFSSPENTNI KNRV AGL KSPSRNASSLSTISDLKD A+SQLLDLKR I
Sbjct: 37  NRKINSNGNKFSSPENTNIVKNRVPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHI 96

Query: 102 DHSHSQIVEDLESSNSRLQKRFKL 126
           DHSHSQI++D ESS SRL+KRFK+
Sbjct: 97  DHSHSQIIKDHESSTSRLEKRFKI 120

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1HRE1 (uncharacterized protein LOC111467096 OS=Cucurbita maxima OX=3661 GN=LOC111467096 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-24
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 0

Query: 42  SNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLI 101
           + +INS  +KFSSPENTNI KNR  AGL KSPSRNASSLSTISDLKD A+SQLLDLKR I
Sbjct: 37  NRKINSNGNKFSSPENTNIVKNRAPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHI 96

Query: 102 DHSHSQIVEDLESSNSRLQKRFKL 126
           DHSHSQI++D ESS SRL+KRFK+
Sbjct: 97  DHSHSQIIKDHESSTSRLEKRFKI 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023532951.13.2e-2576.84uncharacterized protein LOC111794964 [Cucurbita pepo subsp. pepo][more]
XP_022931189.15.5e-2574.74uncharacterized protein LOC111437446 isoform X1 [Cucurbita moschata][more]
XP_022995633.15.5e-2575.79uncharacterized protein LOC111491109 [Cucurbita maxima][more]
KAG6606288.11.2e-2473.68hypothetical protein SDJN03_03605, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022963851.14.6e-2478.57uncharacterized protein LOC111464038 isoform X2 [Cucurbita moschata] >KAG6571615... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K8J72.6e-2575.79uncharacterized protein LOC111491109 OS=Cucurbita maxima OX=3661 GN=LOC111491109... [more]
A0A6J1ETM02.6e-2574.74uncharacterized protein LOC111437446 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HH772.2e-2478.57uncharacterized protein LOC111464038 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HLD92.2e-2478.57uncharacterized protein LOC111464038 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HRE16.5e-2477.38uncharacterized protein LOC111467096 OS=Cucurbita maxima OX=3661 GN=LOC111467096... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR37371OS08G0180400 PROTEINcoord: 32..126
NoneNo IPR availablePANTHERPTHR37371:SF1OS08G0180400 PROTEINcoord: 32..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030139.1Spg030139.1mRNA