Spg030139 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030139
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ABC-type Co2+ transport system
Location	scaffold6: 12871776 .. 12872432 (+)
RNA-Seq Expression	Spg030139
Synteny	Spg030139

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGCAGTGAAATTGAGCGAAGAAGATGGGGAAGAAAAGTGGTCGAACTCGTCGGTCTTCAGTGACGGAGCTTCTGGAAACGCCGCCGTTAACGCCTCCTCCGGCCACCGATTCTCCAAAGTCAGCAATCAGATTAACAGCAAGGCAAGCAAATTTTCTTCACCGGAGAACACCAACATTGCGAAGAACAGAGTCGCCGCTGGTCTCTTGAAGTCGCCTTCTCGAAATGCTTCGAGTTTGAGCACTATATCCGATCTCAAGGATCTTGCGTCTTCACAACTCCTCGATCTCAAGCGCCTGATTGATCACTCTCACTCACAAATCGTCGAAGACCTTGAATCCTCAAACTCACGCCTGCAAAAGAGATTTAAGGTATCCATCTCTCTGTTTTATGATTTTGACGATGACTGCGAGTTGCTGCATCTACTTTTTTCTCTGCGATTTCCGTCTATTAAAATCCATAACTCGAGTTTGAGCTAGGTAAGAGGCAGTTATTTTGGTTGAAACCTTCTGAAATTAGTTCATAAATCACTGCGAATTTGCATTCACCATTCCAATACCGAAGATTCAATACGACAGTTGTGAAAATTTTCGACAACTTTGATTGTAACTTTGTATTTTTGCTTTCGCATTTGACAGCTTGCAAAACATCCATAA

mRNA sequence

CAAGCAGTGAAATTGAGCGAAGAAGATGGGGAAGAAAAGTGGTCGAACTCGTCGGTCTTCAGTGACGGAGCTTCTGGAAACGCCGCCGTTAACGCCTCCTCCGGCCACCGATTCTCCAAAGTCAGCAATCAGATTAACAGCAAGGCAAGCAAATTTTCTTCACCGGAGAACACCAACATTGCGAAGAACAGAGTCGCCGCTGGTCTCTTGAAGTCGCCTTCTCGAAATGCTTCGAGTTTGAGCACTATATCCGATCTCAAGGATCTTGCGTCTTCACAACTCCTCGATCTCAAGCGCCTGATTGATCACTCTCACTCACAAATCGTCGAAGACCTTGAATCCTCAAACTCACGCCTGCAAAAGAGATTTAAGCTTGCAAAACATCCATAA

Coding sequence (CDS)

CAAGCAGTGAAATTGAGCGAAGAAGATGGGGAAGAAAAGTGGTCGAACTCGTCGGTCTTCAGTGACGGAGCTTCTGGAAACGCCGCCGTTAACGCCTCCTCCGGCCACCGATTCTCCAAAGTCAGCAATCAGATTAACAGCAAGGCAAGCAAATTTTCTTCACCGGAGAACACCAACATTGCGAAGAACAGAGTCGCCGCTGGTCTCTTGAAGTCGCCTTCTCGAAATGCTTCGAGTTTGAGCACTATATCCGATCTCAAGGATCTTGCGTCTTCACAACTCCTCGATCTCAAGCGCCTGATTGATCACTCTCACTCACAAATCGTCGAAGACCTTGAATCCTCAAACTCACGCCTGCAAAAGAGATTTAAGCTTGCAAAACATCCATAA

Protein sequence

QAVKLSEEDGEEKWSNSSVFSDGASGNAAVNASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKLAKHP

Homology

[Close]

BLAST of Spg030139 vs. NCBI nr
Match: XP_023532951.1 (uncharacterized protein LOC111794964 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-25
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +INS  SKFSSPENTN AKNRVAA L KS SRN SSLSTISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINSNVSKFSSPENTNTAKNRVAADLFKSFSRNISSLSTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL+DHSHSQIVEDLESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLVDHSHSQIVEDLESSNSRLQKRFKI 120

[Close]

BLAST of Spg030139 vs. NCBI nr
Match: XP_022931189.1 (uncharacterized protein LOC111437446 isoform X1 [Cucurbita moschata])

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-25
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKFSSPENTN AKNRVAAGL KS SRN SSL TISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFSSPENTNTAKNRVAAGLFKSSSRNISSLFTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL+DHSHSQIVED+ESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLVDHSHSQIVEDIESSNSRLQKRFKI 120

[Close]

BLAST of Spg030139 vs. NCBI nr
Match: XP_022995633.1 (uncharacterized protein LOC111491109 [Cucurbita maxima])

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-25
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKF SPENTN AKNRVAAGL KS SRN SSLSTISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFPSPENTNTAKNRVAAGLFKSSSRNISSLSTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL DHSHSQIVEDLESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLFDHSHSQIVEDLESSNSRLQKRFKI 120

[Close]

BLAST of Spg030139 vs. NCBI nr
Match: KAG6606288.1 (hypothetical protein SDJN03_03605, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-24
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKFSSPENTN AKNRVAAGL KS SRN SSL TISDLKD+A
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFSSPENTNTAKNRVAAGLFKSSSRNISSLFTISDLKDVA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL+DHSHSQIVED+ESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLVDHSHSQIVEDIESSNSRLQKRFKI 120

[Close]

BLAST of Spg030139 vs. NCBI nr
Match: XP_022963851.1 (uncharacterized protein LOC111464038 isoform X2 [Cucurbita moschata] >KAG6571615.1 hypothetical protein SDJN03_28343, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 42  SNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLI 101
           + +INS  +KFSSPENTNI KNRV AGL KSPSRNASSLSTISDLKD A+SQLLDLKR I
Sbjct: 37  NRKINSNGNKFSSPENTNIVKNRVPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHI 96

Query: 102 DHSHSQIVEDLESSNSRLQKRFKL 126
           DHSHSQI++D ESS SRL+KRFK+
Sbjct: 97  DHSHSQIIKDHESSTSRLEKRFKI 120

[Close]

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1K8J7 (uncharacterized protein LOC111491109 OS=Cucurbita maxima OX=3661 GN=LOC111491109 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKF SPENTN AKNRVAAGL KS SRN SSLSTISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFPSPENTNTAKNRVAAGLFKSSSRNISSLSTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL DHSHSQIVEDLESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLFDHSHSQIVEDLESSNSRLQKRFKI 120

[Close]

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1ETM0 (uncharacterized protein LOC111437446 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437446 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 31  NASSGHRFSKVSNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLA 90
           +A+   + +  S +IN   SKFSSPENTN AKNRVAAGL KS SRN SSL TISDLKDLA
Sbjct: 26  SATDSPKSAIFSRKINGNVSKFSSPENTNTAKNRVAAGLFKSSSRNISSLFTISDLKDLA 85

Query: 91  SSQLLDLKRLIDHSHSQIVEDLESSNSRLQKRFKL 126
           SSQL DLKRL+DHSHSQIVED+ESSNSRLQKRFK+
Sbjct: 86  SSQLHDLKRLVDHSHSQIVEDIESSNSRLQKRFKI 120

[Close]

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1HH77 (uncharacterized protein LOC111464038 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464038 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 42  SNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLI 101
           + +INS  +KFSSPENTNI KNRV AGL KSPSRNASSLSTISDLKD A+SQLLDLKR I
Sbjct: 37  NRKINSNGNKFSSPENTNIVKNRVPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHI 96

Query: 102 DHSHSQIVEDLESSNSRLQKRFKL 126
           DHSHSQI++D ESS SRL+KRFK+
Sbjct: 97  DHSHSQIIKDHESSTSRLEKRFKI 120

[Close]

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1HLD9 (uncharacterized protein LOC111464038 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464038 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 42  SNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLI 101
           + +INS  +KFSSPENTNI KNRV AGL KSPSRNASSLSTISDLKD A+SQLLDLKR I
Sbjct: 37  NRKINSNGNKFSSPENTNIVKNRVPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHI 96

Query: 102 DHSHSQIVEDLESSNSRLQKRFKL 126
           DHSHSQI++D ESS SRL+KRFK+
Sbjct: 97  DHSHSQIIKDHESSTSRLEKRFKI 120

[Close]

BLAST of Spg030139 vs. ExPASy TrEMBL
Match: A0A6J1HRE1 (uncharacterized protein LOC111467096 OS=Cucurbita maxima OX=3661 GN=LOC111467096 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-24
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 42  SNQINSKASKFSSPENTNIAKNRVAAGLLKSPSRNASSLSTISDLKDLASSQLLDLKRLI 101
           + +INS  +KFSSPENTNI KNR  AGL KSPSRNASSLSTISDLKD A+SQLLDLKR I
Sbjct: 37  NRKINSNGNKFSSPENTNIVKNRAPAGLFKSPSRNASSLSTISDLKDFAASQLLDLKRHI 96

Query: 102 DHSHSQIVEDLESSNSRLQKRFKL 126
           DHSHSQI++D ESS SRL+KRFK+
Sbjct: 97  DHSHSQIIKDHESSTSRLEKRFKI 120

The following BLAST results are available for this feature:

BLAST of Spg030139 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532951.1	3.2e-25	76.84	uncharacterized protein LOC111794964 [Cucurbita pepo subsp. pepo]	[more]
XP_022931189.1	5.5e-25	74.74	uncharacterized protein LOC111437446 isoform X1 [Cucurbita moschata]	[more]
XP_022995633.1	5.5e-25	75.79	uncharacterized protein LOC111491109 [Cucurbita maxima]	[more]
KAG6606288.1	1.2e-24	73.68	hypothetical protein SDJN03_03605, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022963851.1	4.6e-24	78.57	uncharacterized protein LOC111464038 isoform X2 [Cucurbita moschata] >KAG6571615...	[more]

BLAST of Spg030139 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030139 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8J7	2.6e-25	75.79	uncharacterized protein LOC111491109 OS=Cucurbita maxima OX=3661 GN=LOC111491109...	[more]
A0A6J1ETM0	2.6e-25	74.74	uncharacterized protein LOC111437446 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HH77	2.2e-24	78.57	uncharacterized protein LOC111464038 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HLD9	2.2e-24	78.57	uncharacterized protein LOC111464038 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HRE1	6.5e-24	77.38	uncharacterized protein LOC111467096 OS=Cucurbita maxima OX=3661 GN=LOC111467096...	[more]

BLAST of Spg030139 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR37371	OS08G0180400 PROTEIN	coord: 32..126
None	No IPR available	PANTHER	PTHR37371:SF1	OS08G0180400 PROTEIN	coord: 32..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030139.1	Spg030139.1	mRNA