Spg030087 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030087
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description18S rRNA aminocarboxypropyltransferase
Locationscaffold6: 10366862 .. 10373248 (-)
RNA-Seq ExpressionSpg030087
SyntenySpg030087
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGTAGTGAAAAAAAAATAAACCAAATTAAACCTTATTCTAATCTGCAGACCATAACCTTCGTCCTATTGGAAAAAGCATCCGCCGACCCTTCCTCGCCGTCGTGTACTAATTCCGCCACCTGGAGACGGTGCTCTACTAAATCATCGAGGCCCTTTTCGAGAAGGAAAGGAGAGGGAAAACAATAAGAAAACAAGCAACGAATCCGCGGAGAAAAGAACCCAGAAGCCCCGAATTCCACTTCACTAGTCTGCTTCAGAATGAGCCATAACAAGCCTAGACGCTTCAAAAATCATCATCCCCGTCGCGGACAATCCACTCGAGGCCATAAATTCGTCGCGTAATTACATTTACAGTTACCCTTTTCCCCCGATTCGTCTTTTCGTCGATTGCTCATTTGCTTTCTTTTTGTGTTTTTTGGGTTTCTCAGAGAGGACGAGTGTTTGCCAGTCGACCCAGGTGCCTACTTTGTTTCACTGAAGCTTCATAGATTTAGTTACTGTTAATAGAAGCCATCACGGTAAAGGGGTTTTGGATATAGGTCCTTTATGAGTTCCTTTCTCTTGCAGCCAATGAAGAGGAGCAAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGTGTGTGTTATTCAACTTGTTTTTGACCTTTTTGTTGCTGAATTCTCAACAATTCCATCCTTAAACTTGTTACTGCCCTGCTGCTGTTACAAATGGGAATGAAAACTTAAGCTTAAAAAACTGCATACTATATGAAATTGATGGTGTTTTATTGTTGATATAGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAGCTTGCACGATTTGGCTTGTTGAAAGAAAGTACCTTATTCTCTCCTTTTCTTTTATTTTCATATTTTTAACTATGTTGCTCATTAGTACATTAATTGGTTCATGTTGGCATATCACCGAGCCATTTTAGTTCTACCACAAGAATTAGTTGATTTTGTATGTGTTATCCCCTCTCCACTTCATTAATGATCAAACAAAATGTCTTGTTGGATGTATTGGCTTAATTCTACTTGGTCTTGGCGGCAAGAAAATCTGAAGATAAGCTTCAAATGTGATAATTGGTATCCATACGAATATGATGAAGTCTAGAAAAATAGGCTGCATTTTGTTTACACGCTGAAGGAAGTCTAATGTTAGATGGTTCTGTTTCGTAGGTGTGGAACATGTCCTATACGAGGAACTTTCCAGATATAAATACAAATTAGAAGAGAAGCAAATCTAAAGTTTCTGATTGTAGACTGACAAATCAGGTTTAAATCATAAACGTTGCAAAACCAAGAACCAAATAGAACTAGTGAAAATTAAGGAACAACAAGTTTAATTTGCTTTAATTATTTTTAAGTTGCCTCATCAAATGAGGGTGGATGGTTTAAATTTGATGTGAATCATCTGATTCATGCTCGTTTAATATTCGAATTAAAAGCACTCATCTTCTATCAAATACAATTAATTGAGTTCTTTTAACATATAAACAAATGATCTAGCTTCCGTTGTGTTCATGCAGGATTTGCGTGTTAACAGTGGATTTGGAGGCATTGTTTTAAGGTATGGTGAACAATTATGTTTCTTAGTGTACTAAGTTTGTAACTGAACATAGGTTTATGATAATAATATCACTTGAAAGTTGTGTCATCTCATCTCTAGTTTTAGATATACATAAACAGCTTTCAAGAGTGTCAAGGAAATTTGAACTTGTTTCCTGACTTGATGGAGGTACTATTCAACATTATTGGGAATCCTTTACCTTTGACATTTGGTGTTAATTTCAAGAAATTTGTTTGTTTTCAATTGTTTTTGGATGATATGCTTCTGTAAGTGAGGATCCACTTGTTTCGATTGAGGGAGTTGCTGCCAATCCTCTAAATGGTTGCGATGGAATGGAATAATGGCCGGTTTCAAAGCATATGATGGAGTTGAGAGGTTTCCTTAATTTTACTGGATATTACAGAAATTTTGTTGCCAATTATGGTGCATTGCTTTCCTTTTTATCCACTCAAGAAAGACAATTTCCACAGGAAAACAGCTTTTTTGTTGCACAACTGTAAGTTGCTTGTGATACATTCCTATGTTTAGATTGCCACATTTTTCTCAACCTTGTTATCATAGAGATAGTTGCTTCTGAGACCAGGGTGGAAGAGTGGGTATTTTCAGTTAGGAGTTGATGTTCATCGTTTCAAAGATGCATTAGTGATGACCATACCCAGATGGAAATTTGTGGTCCTTAAAGTCTTGTTAGATAATAGATACTAAGATGGTGGCTGGACAGTTGAAGACATCATAAACGGATCACTAAGCTCATATGGTATTATTTTGATATTTATTATAAACCTGGCTGGAAATAAGGTTGCCAGTGCACTGTCTTGTATGCCCTTGCATAAGGCGTTAAACCATCCTTCAAGGTTCCCCCCACCACCATCCACCCACTCACACAGAAAATGGGAAAAATGGGTGCATGATGGTATGGAGATCTTTCGTGTTTCAAAGAAAAGTTAGTCTTGCCATCTAATTCGCCTACCATTCCTTCATCGCAATAGGAGTTCCATGCCTCACTTATGGCTGGCTGGCTGGCCAGGGGTATCCTCAAGACCTATCATAGATTAGCCAAGGAAGTGGCCTGGCTAGAGTTAAGCTATTTGTTAGTGTATGTGTGGTCTATGAACAAGCTAAGTACCTTTGTGCAGGTGGCTTGGGGAGGACCAGTCCTTCATCACTTGCTGTTGGGTTGCCATTTTGTGCAATTGATCTGGAGTAGGTGGTTGAGCTTGTTTGGTTTACATTTGGTGTGGAGGAGAGATTGATACTCTATGATTGAGAAGGTGCTCTGGAGTTTGCCTTAGAGTGCTGCGACAAGCTTCTGGCTTGAGAGAAATAACAATTTTTTAGAGAGGTGGAGAAATCACGTGAGGAGGTCTAGGAGGGGGCTAGGTTTAATGCCTCCTTGTGGGTGTCTAATTATCATATTGGTTTGGTTTTATTGGATTGGAGGCTTTTTCTATACTTAGTTTTTGGGCTCCCTCTCGCTTTCTTGGTTTTTGTTGGGCTTTTTTTGTATGCCCTTGTTTTTATTTCATTTTTCCTAATGAAAGTTTGGTTTCTTAAAAAAAAAAAAACTCGAACAAGCTACGTACGTTGCTTTAGCCCTTGTTATTCTTTTTCCAACCTTTGCTCATTTCAAAATGTATTTTGGGGGACTTGTATTTATTAATTTAATGAAGAAATCAACTTTCATTAAGATGTAGTGTGGGTCCCACCTATAAACAAGTGATGTAACTAATTTTCGGGTGGGAAAGATTCAAGCTAAGGTCGTATTTAGTAAGGATATTACATGTATGAGATATTTTCTTTGGATTAAGAGTTTTGGCGTTTGAGGAGCGGTCTTGAGTCATCTCAAAACTATGTACCTCTCTATTGTTAATTTAATTGTGAATCGATCATCTTGCTAATTATCTACTATAACCTGCGTTCACAATTTTATTGATGGCCTGATGAAACAAGATGGATGGTAATGATTAAATTCTTATACAAAGGCTTATGAACTTTTGGTCCGTATCTTTATCCTCTTCAATCTGAAAATTTTGACAGCCCAGTGGGAGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAAAGGATTAGCAGTTGTGGATTGCTCATGGGCGCGTCTGGGCGATGTTCCATTTGTGAAGTTGCGTTGCTCTGCTCCTCGCCTATGTAAGATATTTGCTTCTGGAATATGAAAGTTTTGGGTTCTTTTAACCTCGCTATTCTATGATTATTAATGTTGTCCTAAACTGCGATTGAGATCTCACTATGTTCAATGATGTGCATTTTCCTGACTGGACTCCAACTGATTGCCATTGGCAATATGTATATTATGGTTTATTGGCAATGACAATAAGTATATCATGAATTATTCTTTATTTCTGATTTTCACCTTCTGCAATTTTTTTGGTGCAAATGTTCGCAGTACCTTGGCTAGTAGCTGCAAACCCAGTGAACTATGGTCGACCATGTGAGCTATCTTGTGTGGAAGCATTAGCTGCCGCTCTAATCATATGGTACCATAACCTCTCCCTCTTCTTTTCCCATGTAGGCTAGTTGGTTTCTAACCAATTCTGCTGAGATAAGTCAATTACTAATCTCATTTCATTGTACATCATTTTTTCATATATTTGGTGTAATCAGCTTACATCTGATGATTGGGTAAAAAAAAAATCTCATTGTAGATCAACTCATCATCTAGGATTTGTTAGCCGTTGTACGTCTTTCGTTATAGTATACTGCTCTGTTTGAATGTTCTAATTTATTAAATTTATATCACTTCACGCCAACATACAGAATTGTGAAGTTGTTTGTTTTATAGTTTTGTTGGTCAGTTTGGTTCTTATTTTAAGGTTCAAAGAAAAATCATTATTATTTTTGCTAATGTAGTGACTAACAAAGCTTTAGATCTTGCCCAGGAGCCTTAAGCAACTTAGACTTCAAGAGACTGACTAGAATATGATTAATGATCATCGACTGTTAATGAACGATAACACTCGCTTATCACTTTTCTATGGATCTTTGAATTTCCTATAGCTGGAAATGTGATTATTTGGGTGTAATTGAGCAAGCATTCTGTCCATGTTGTTTAACCATTTCTGTTGACCCGAACTATCAGTGGGGAAAGAGAAACAGCAGACCTGTTGCTTAGCAAGTTCAAGTGGGGCCATGCTTTTCTTTCTGTTAATAGGTATGTTTTATTATTTACTTTATACCACTATGACTAAATATTTAATTCAGTCTGGTTCGGTCATTTTCCAATTTTGTTCCTAATCCTTTGAAAGGTTCAATTTTTTTCCATCAATTTTAAATTGTGCCGGTTCATCCATAAAATTGGAAACCTACCTGTGGCATATGAGATAGAATAACTTATCCCATTCGAAACAACCTGTCATTATCAGAGATGGATACTGAAATTCCATACGTTAAAAGAAAAATTGAACATTTTAAAAGGTCACGGAGATTAAGGACTAAATTACATGTTTAGCTTCAAGTTTTCAAGTATAAAATGGAGTTTGAAGCTTGTGAATTGTTATTATTCGAGCTTTTTCGATGTCAGATGCTTGCTAATTTCTGTTTGTATGACACAGGGAGCTTCTAAAACAATACTCAGCATGCGAGAATAGTGCTGATATTATTTCGGTGCAGAATGCTTGGTTATCACAACAAAGCCAGGTCCCCAAGGAACTGCATAATGTAGAAGGTATTCTTTTGAAATAATTGCATCAATCTCTTGTTTGTCTTGGACCTTGATTTGAAGAAAATGGAGTTGTCTAGTGTCTGTATAAAAACGACCAAAACTGACAAAAGGCAACCACCAAACCGATCAAGATCAAACCAAGTCGATTGAAACCAAGAATATCTAACCAAGCCAAATCGACTGACTATTTATTCAAATTTACATTTTAGAAAATTGAACCAATGTGGGCCAAACCGATGTAACTAGACTTTTGATTTGGATGTAGAGTCGTTTTCCAGCAATGGGAAGGACTTGTTAGGATTTAACATGAACAAGTGATGGTTTGGGTGTTGCAGGTGCAGAGAAGTCATCTGTGGGCGAAGATGACGAGGGTTCCGATGATTCGGACGATGGACTTCCACCATTGGAGAAGAATCTAAATCACTTGATCTTGCAGCAAGACAGCGATGAAGAAAGCGAGTAAAAAATTATACCATAGAGGCAAAAGTTTAATGCAAAGTTTAATGCAGAGACCAAACATTTCCTACACAGACTAGGTTTCTTCTGTTTTACTTTGCTTTTTTACTTAGTAGTGTACTAATTTAGTTGGAGTGTGTAATTTTGCTTTTGTCTTTTGATTTTTTTTTTCATTGTATTTATATTAATTTTTGTTCGTTAGGGATATATGCGTGTAGGTTTAGGTGTTTTTTTTTTCTTGGGCAAGACCGATATATTAGTTCACGAAAAATTTAAAACTAATGCACATAAGACTGTTTTAAAAAGCTGTTTCTTTTTCTCCTTTTCCATTTCTCTTCCTTAAAAAAAGCTGTTTTTTTTCTTTTTTTTTTTTTTTCTTTTCCTTAAACAAAAAAAAAGCTGTTTCCTTTAAAGGCAAATTAAAAATTACTCGTTTTGATTTTAGATATTTTGTAAGTTCAAATTACTCATTTTTTTTTTACTGTTGGTGAAGGTAATTGGTATGTGATAAATTTACATGATAGAATTCTTGGTGGGTTTGCAGAAATTTAGAAGAGAAAAAAAATAATCTAAAAGAAGAATACTTGAAATTAAAATTTTGAAAGATGAATTAGAAAGTAGGGCGTTATTATAATATAAATT

mRNA sequence

ATGAGCCATAACAAGCCTAGACGCTTCAAAAATCATCATCCCCGTCGCGGACAATCCACTCGAGGCCATAAATTCGTCGCAGAGGACGAGTGTTTGCCAGTCGACCCAGCCAATGAAGAGGAGCAAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAGCTTGCACGATTTGGCTTGTTGAAAGAAAGTACCTTATTCTCTCCTTTTCTTTTATTTTCATATTTTTAA

Coding sequence (CDS)

ATGAGCCATAACAAGCCTAGACGCTTCAAAAATCATCATCCCCGTCGCGGACAATCCACTCGAGGCCATAAATTCGTCGCAGAGGACGAGTGTTTGCCAGTCGACCCAGCCAATGAAGAGGAGCAAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAGCTTGCACGATTTGGCTTGTTGAAAGAAAGTACCTTATTCTCTCCTTTTCTTTTATTTTCATATTTTTAA

Protein sequence

MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTLFSPFLLFSYF
Homology
[Close]
BLAST of Spg030087 vs. NCBI nr
Match: XP_022136904.1 (ribosome biogenesis protein TSR3 homolog [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 6.8e-35
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQSTRGHKF+ ED+CLP+DPANEEE AGPKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVSSGF 82

[Close]
BLAST of Spg030087 vs. NCBI nr
Match: XP_038896612.1 (18S rRNA aminocarboxypropyltransferase [Benincasa hispida])

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQSTRGHKF+ EDECLP+DPAN+EE   PKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPIDPANDEEPTSPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVNSGF 82

[Close]
BLAST of Spg030087 vs. NCBI nr
Match: XP_023551798.1 (ribosome biogenesis protein TSR3 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 6.3e-33
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKFV EDECLP+DP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVNSGF 82

[Close]
BLAST of Spg030087 vs. NCBI nr
Match: XP_022984901.1 (ribosome biogenesis protein TSR3 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVNSGF 82

[Close]
BLAST of Spg030087 vs. NCBI nr
Match: XP_022984902.1 (ribosome biogenesis protein TSR3 homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVNSGF 82

[Close]
BLAST of Spg030087 vs. ExPASy Swiss-Prot
Match: Q5HZH2 (18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-07
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 34 VDPANEEEQAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLK 75
          V P   E+Q GP        LAMW+ G CD KRCTGRKLAR GL++
Sbjct: 40 VQPEEAEDQGGPGPAALPCALAMWELGHCDPKRCTGRKLARLGLVR 85

[Close]
BLAST of Spg030087 vs. ExPASy Swiss-Prot
Match: Q12094 (18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-07
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 4  NKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCT 63
          NK    KN  P+RG    GH        + +   N E+   P ++LAMWDF  CD KRC+
Sbjct: 6  NKMHEPKNGRPQRG--ANGHSSRQNHRRMEMKYDNSEKMKFP-VKLAMWDFDHCDPKRCS 65

Query: 64 GRKLARFGLLK 75
          G+KL R GL+K
Sbjct: 66 GKKLERLGLIK 73

[Close]
BLAST of Spg030087 vs. ExPASy Swiss-Prot
Match: Q9UJK0 (18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 34 VDPANEEEQAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLK 75
          V+P   + + GP        LAMW+ G CD +RCTGRKLAR GL++
Sbjct: 40 VEPGAADGEGGPGPAALPCTLAMWELGHCDPRRCTGRKLARLGLVR 85

[Close]
BLAST of Spg030087 vs. ExPASy TrEMBL
Match: A0A6J1C5M7 (18S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC111008482 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.3e-35
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQSTRGHKF+ ED+CLP+DPANEEE AGPKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVSSGF 82

[Close]
BLAST of Spg030087 vs. ExPASy TrEMBL
Match: A0A6J1J6L0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111483038 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVNSGF 82

[Close]
BLAST of Spg030087 vs. ExPASy TrEMBL
Match: A0A6J1J3E9 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111483038 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVNSGF 82

[Close]
BLAST of Spg030087 vs. ExPASy TrEMBL
Match: A0A6J1ETU0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111435889 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVNSGF 82

[Close]
BLAST of Spg030087 vs. ExPASy TrEMBL
Match: A0A6J1EML6 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111435889 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1  MSHNKPRRFKNHHPRRGQSTRGHKFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKF+ EDECLP+DP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKESTLFSPF 83
          RCTGRKLARFGLLK+  + S F
Sbjct: 61 RCTGRKLARFGLLKDLRVNSGF 82

[Close]
BLAST of Spg030087 vs. TAIR 10
Match: AT5G10070.2 (RNase L inhibitor protein-related )

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-17
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0 

Query: 10 KNHHPRRGQSTRGH--KFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKL 69
          K++  + G S+RG       EDE LP+D   E+E   PK+QLAMWDFGQCDAKRCTGRKL
Sbjct: 5  KHNRSKGGNSSRGRTDNLAREDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKL 64

Query: 70 ARFGLLKE 76
          ARF LLKE
Sbjct: 65 ARFNLLKE 72

[Close]
BLAST of Spg030087 vs. TAIR 10
Match: AT5G10070.1 (RNase L inhibitor protein-related )

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-17
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0 

Query: 10 KNHHPRRGQSTRGH--KFVAEDECLPVDPANEEEQAGPKIQLAMWDFGQCDAKRCTGRKL 69
          K++  + G S+RG       EDE LP+D   E+E   PK+QLAMWDFGQCDAKRCTGRKL
Sbjct: 5  KHNRSKGGNSSRGRTDNLAREDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKL 64

Query: 70 ARFGLLKE 76
          ARF LLKE
Sbjct: 65 ARFNLLKE 72

The following BLAST results are available for this feature:
BLAST of Spg030087 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136904.16.8e-3586.59ribosome biogenesis protein TSR3 homolog [Momordica charantia][more]
XP_038896612.11.3e-3384.1518S rRNA aminocarboxypropyltransferase [Benincasa hispida][more]
XP_023551798.16.3e-3385.37ribosome biogenesis protein TSR3 homolog [Cucurbita pepo subsp. pepo][more]
XP_022984901.18.3e-3384.15ribosome biogenesis protein TSR3 homolog isoform X1 [Cucurbita maxima][more]
XP_022984902.18.3e-3384.15ribosome biogenesis protein TSR3 homolog isoform X2 [Cucurbita maxima][more]
BLAST of Spg030087 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5HZH28.1e-0754.3518S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=... [more]
Q120948.1e-0742.2518S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC ... [more]
Q9UJK02.0e-0547.8318S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1[more]
BLAST of Spg030087 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C5M73.3e-3586.5918S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1J6L04.0e-3384.1518S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC1114830... [more]
A0A6J1J3E94.0e-3384.1518S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC1114830... [more]
A0A6J1ETU04.0e-3384.1518S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A6J1EML64.0e-3384.1518S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
BLAST of Spg030087 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G10070.21.4e-1761.76RNase L inhibitor protein-related [more]
AT5G10070.11.4e-1761.76RNase L inhibitor protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007209RNase L inhibitor RLI-like, possible metal-binding domainPFAMPF04068RLIcoord: 48..74
e-value: 4.0E-13
score: 48.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
IPR02296816S/18S rRNA aminocarboxypropyltransferase Tsr3PANTHERPTHR20426RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOGcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030087.1Spg030087.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000455 enzyme-directed rRNA pseudouridine synthesis
biological_process GO:0006364 rRNA processing
cellular_component GO:0005737 cytoplasm
molecular_function GO:0106388 18S rRNA aminocarboxypropyltransferase activity
molecular_function GO:1904047 S-adenosyl-L-methionine binding
molecular_function GO:0016740 transferase activity