Spg030020 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030020
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DUF740 domain-containing protein
Location	scaffold6: 10767503 .. 10767916 (+)
RNA-Seq Expression	Spg030020
Synteny	Spg030020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAATCGGAGTCGGCCAAAGATTGCAAGAGGCACCCAAATCACAAGCTCTTGCCCGGAATCTGCCCTTCCTGTCTCCGAGAAAGGCTTCAACAATTCCACCAATCTTCAATTTATTCCGATTCCCTTTCCAGCTTCTCTTCTTCCTCCGAATTCTTCTCCTCCGGCGACTCTCCATGCCGCCGCCGCCATCATCATCGGAGGAACGCCTCCGAGATGCCCACCGCCTCCACAGCGCCGGATTTCTTTGGGAACAGGCTGAAGAAGAGCGGCTCCATTGGGATCTTGGCCGCTGCCCACGGCGGCGGAGCCAAGAAAAAAGGTGGGTTTTGGTCGAGGTTGTTAGTTCGGCCCAAGGCTTTGTATTTTCATTCGCAGCCCAAAGTTTCGTCTAGAGAAATTTTGGGTTGA

mRNA sequence

ATGGGCAAATCGGAGTCGGCCAAAGATTGCAAGAGGCACCCAAATCACAAGCTCTTGCCCGGAATCTGCCCTTCCTGTCTCCGAGAAAGGCTTCAACAATTCCACCAATCTTCAATTTATTCCGATTCCCTTTCCAGCTTCTCTTCTTCCTCCGAATTCTTCTCCTCCGGCGACTCTCCATGCCGCCGCCGCCATCATCATCGGAGGAACGCCTCCGAGATGCCCACCGCCTCCACAGCGCCGGATTTCTTTGGGAACAGGCTGAAGAAGAGCGGCTCCATTGGGATCTTGGCCGCTGCCCACGGCGGCGGAGCCAAGAAAAAAGGTGGGTTTTGGTCGAGGTTGTTAGTTCGGCCCAAGGCTTTGTATTTTCATTCGCAGCCCAAAGTTTCGTCTAGAGAAATTTTGGGTTGA

Coding sequence (CDS)

ATGGGCAAATCGGAGTCGGCCAAAGATTGCAAGAGGCACCCAAATCACAAGCTCTTGCCCGGAATCTGCCCTTCCTGTCTCCGAGAAAGGCTTCAACAATTCCACCAATCTTCAATTTATTCCGATTCCCTTTCCAGCTTCTCTTCTTCCTCCGAATTCTTCTCCTCCGGCGACTCTCCATGCCGCCGCCGCCATCATCATCGGAGGAACGCCTCCGAGATGCCCACCGCCTCCACAGCGCCGGATTTCTTTGGGAACAGGCTGAAGAAGAGCGGCTCCATTGGGATCTTGGCCGCTGCCCACGGCGGCGGAGCCAAGAAAAAAGGTGGGTTTTGGTCGAGGTTGTTAGTTCGGCCCAAGGCTTTGTATTTTCATTCGCAGCCCAAAGTTTCGTCTAGAGAAATTTTGGGTTGA

Protein sequence

MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSSIYSDSLSSFSSSSEFFSSGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILAAAHGGGAKKKGGFWSRLLVRPKALYFHSQPKVSSREILG

Homology

[Close]

BLAST of Spg030020 vs. NCBI nr
Match: XP_022989609.1 (uncharacterized protein LOC111486643 [Cucurbita maxima])

HSP 1 Score: 177.9 bits (450), Expect = 5.8e-41
Identity = 97/145 (66.90%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQF-HQSSIYSDSLSSFSS-------SSE 60
           MGKSESAK+CKRHPNH+LLPGICPSCLRE LQ+F +QSSIYSDS S+FSS       SSE
Sbjct: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSASTFSSSSSSFPHSSE 60

Query: 61  FFSSGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILAAAHGGGAKKKGGFW 120
           FF SGDSP R RHHH+RNASEM   S A D FG++LK SG           G KKKGGFW
Sbjct: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKLKMSGE----------GGKKKGGFW 120

Query: 121 SRLLVRPKALYFHSQPKVSSREILG 138
           SRL+   KA +FHSQPKVS REI+G
Sbjct: 121 SRLMGGRKAFHFHSQPKVSCREIIG 135

[Close]

BLAST of Spg030020 vs. NCBI nr
Match: XP_023544931.1 (uncharacterized protein LOC111804380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 95/145 (65.52%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQF-HQSSIYSDSLSSFSS-------SSE 60
           MGKSESAKDCKRHPNH+LLPGICPSCLRE LQ+F +QSSIYSDS+S+FSS       SSE
Sbjct: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60

Query: 61  FFSSGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILAAAHGGGAKKKGGFW 120
           FF SGDSP R RHHH+RNASEM   S A D FG+++K  G           G KKKGGFW
Sbjct: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKVKMGGE----------GGKKKGGFW 120

Query: 121 SRLLVRPKALYFHSQPKVSSREILG 138
           SRL+   KA +FHSQPKV  REI+G
Sbjct: 121 SRLMGGRKAFHFHSQPKVCCREIMG 135

[Close]

BLAST of Spg030020 vs. NCBI nr
Match: XP_022929275.1 (uncharacterized protein LOC111435907 [Cucurbita moschata])

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-39
Identity = 99/142 (69.72%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSSI-YSD----SLSSFSSSSEFFS 60
           MGKSESAK+CKRH NH  LPGICPSCLRERLQQ  QSSI Y+D    S SSF  SSE F 
Sbjct: 1   MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSISYADSRSTSSSSFLKSSESFF 60

Query: 61  SGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILAAAHGGGAKKKGGFWSRL 120
           SG++  RRR  H RNASE+ T S A D FG+++KKS SI I  +A GGG KKK GFWSR 
Sbjct: 61  SGNTSWRRR--HTRNASELFTGSMAADLFGDKVKKSSSIRI--SADGGGGKKKVGFWSRF 120

Query: 121 LVRPKALYFHSQPKVSSREILG 138
           LVRPKALYFHS PKVSSREILG
Sbjct: 121 LVRPKALYFHSHPKVSSREILG 138

[Close]

BLAST of Spg030020 vs. NCBI nr
Match: XP_023553119.1 (uncharacterized protein LOC111810620 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 4.1e-39
Identity = 99/144 (68.75%), Postives = 107/144 (74.31%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSSI-YSD----SLSSFSSSSEFFS 60
           MGKSESA++CKRH NH  LPGICPSCLRERLQQ  QSSI YSD    S SSF  SSE F 
Sbjct: 1   MGKSESARECKRHQNHNQLPGICPSCLRERLQQLQQSSISYSDSRSTSSSSFLKSSESFF 60

Query: 61  SGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILA--AAHGGGAKKKGGFWS 120
           SG++  RRR  H RNASE+ T S A D FG+++KKS SI I A     GGG KKK GFWS
Sbjct: 61  SGNTSWRRR--HTRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGGGGKKKVGFWS 120

Query: 121 RLLVRPKALYFHSQPKVSSREILG 138
           R LVRPKALYFHS PKVSSREILG
Sbjct: 121 RFLVRPKALYFHSHPKVSSREILG 142

[Close]

BLAST of Spg030020 vs. NCBI nr
Match: XP_022985135.1 (uncharacterized protein LOC111483218, partial [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-38
Identity = 99/146 (67.81%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSSI--YSD----SLSSFSSSSEFF 60
           MGKSESAK+CKRH NH  LPGICPSCLRERLQQ  QSS   YSD    S SSF  SSE F
Sbjct: 56  MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSSINYSDSRSTSSSSFLKSSESF 115

Query: 61  SSGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILA---AAHGGGAKKKGGF 120
            SG++  RRR  H RNASE+ T S A D FG+++KKS SI I A      GGG KKK GF
Sbjct: 116 FSGNTSWRRR--HTRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGGGGGKKKVGF 175

Query: 121 WSRLLVRPKALYFHSQPKVSSREILG 138
           WSR LVRPKALYFHS PKVSSREILG
Sbjct: 176 WSRFLVRPKALYFHSHPKVSSREILG 199

[Close]

BLAST of Spg030020 vs. ExPASy TrEMBL
Match: A0A6J1JPT9 (uncharacterized protein LOC111486643 OS=Cucurbita maxima OX=3661 GN=LOC111486643 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.8e-41
Identity = 97/145 (66.90%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQF-HQSSIYSDSLSSFSS-------SSE 60
           MGKSESAK+CKRHPNH+LLPGICPSCLRE LQ+F +QSSIYSDS S+FSS       SSE
Sbjct: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSASTFSSSSSSFPHSSE 60

Query: 61  FFSSGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILAAAHGGGAKKKGGFW 120
           FF SGDSP R RHHH+RNASEM   S A D FG++LK SG           G KKKGGFW
Sbjct: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKLKMSGE----------GGKKKGGFW 120

Query: 121 SRLLVRPKALYFHSQPKVSSREILG 138
           SRL+   KA +FHSQPKVS REI+G
Sbjct: 121 SRLMGGRKAFHFHSQPKVSCREIIG 135

[Close]

BLAST of Spg030020 vs. ExPASy TrEMBL
Match: A0A6J1ETY8 (uncharacterized protein LOC111435907 OS=Cucurbita moschata OX=3662 GN=LOC111435907 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 99/142 (69.72%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSSI-YSD----SLSSFSSSSEFFS 60
           MGKSESAK+CKRH NH  LPGICPSCLRERLQQ  QSSI Y+D    S SSF  SSE F 
Sbjct: 1   MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSISYADSRSTSSSSFLKSSESFF 60

Query: 61  SGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILAAAHGGGAKKKGGFWSRL 120
           SG++  RRR  H RNASE+ T S A D FG+++KKS SI I  +A GGG KKK GFWSR 
Sbjct: 61  SGNTSWRRR--HTRNASELFTGSMAADLFGDKVKKSSSIRI--SADGGGGKKKVGFWSRF 120

Query: 121 LVRPKALYFHSQPKVSSREILG 138
           LVRPKALYFHS PKVSSREILG
Sbjct: 121 LVRPKALYFHSHPKVSSREILG 138

[Close]

BLAST of Spg030020 vs. ExPASy TrEMBL
Match: A0A6J1JAI6 (uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.6e-39
Identity = 99/146 (67.81%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSSI--YSD----SLSSFSSSSEFF 60
           MGKSESAK+CKRH NH  LPGICPSCLRERLQQ  QSS   YSD    S SSF  SSE F
Sbjct: 56  MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSSINYSDSRSTSSSSFLKSSESF 115

Query: 61  SSGDSPCRRRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILA---AAHGGGAKKKGGF 120
            SG++  RRR  H RNASE+ T S A D FG+++KKS SI I A      GGG KKK GF
Sbjct: 116 FSGNTSWRRR--HTRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGGGGGKKKVGF 175

Query: 121 WSRLLVRPKALYFHSQPKVSSREILG 138
           WSR LVRPKALYFHS PKVSSREILG
Sbjct: 176 WSRFLVRPKALYFHSHPKVSSREILG 199

[Close]

BLAST of Spg030020 vs. ExPASy TrEMBL
Match: A0A5D3CZT1 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00010 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.5e-36
Identity = 91/132 (68.94%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSSIYSDSLSSF----SSSSEFFSS 60
           MGKSESAK+CKRHPN+ LLPGICPSCLRE+LQQFHQS  YSDS S+F    SSSS+FF S
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  GDSPCR-RRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILAAAHGGG---AKKKGGFW 120
            DS  R RRHHHRRNASE  T S A D   ++LKKSGSI I A    G     KKK GFW
Sbjct: 61  ADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKKLGFW 120

Query: 121 SRLLVRPKALYF 125
           SRLL+RPKALYF
Sbjct: 121 SRLLLRPKALYF 132

[Close]

BLAST of Spg030020 vs. ExPASy TrEMBL
Match: A0A1S3BWL8 (uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.5e-36
Identity = 91/132 (68.94%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MGKSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSSIYSDSLSSF----SSSSEFFSS 60
           MGKSESAK+CKRHPN+ LLPGICPSCLRE+LQQFHQS  YSDS S+F    SSSS+FF S
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  GDSPCR-RRHHHRRNASEMPTASTAPDFFGNRLKKSGSIGILAAAHGGG---AKKKGGFW 120
            DS  R RRHHHRRNASE  T S A D   ++LKKSGSI I A    G     KKK GFW
Sbjct: 61  ADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKKLGFW 120

Query: 121 SRLLVRPKALYF 125
           SRLL+RPKALYF
Sbjct: 121 SRLLLRPKALYF 132

[Close]

BLAST of Spg030020 vs. TAIR 10
Match: AT1G22470.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72240.1); Has 1693 Blast hits to 236 proteins in 54 species: Archae - 0; Bacteria - 8; Metazoa - 451; Fungi - 116; Plants - 94; Viruses - 2; Other Eukaryotes - 1022 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.5e-04
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 3  KSESAKD----CKRHPNHKLLPGICPSCLRERLQQFHQSSIYSDSLSSFSSSS 52
          +S+S+ D    CK+HP H+  PGIC  CL E L +   SS + D  SS SSSS
Sbjct: 30 RSDSSSDYNYSCKKHPKHRQSPGICSLCLNESLSKL--SSEFYDYSSSMSSSS 80

[Close]

BLAST of Spg030020 vs. TAIR 10
Match: AT1G35210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.5e-04
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 3  KSESAKDCKRHPNHKLLPGICPSCLRERLQQFHQSS---------IYSDSLSSFSSSSEF 62
          K+++A  CK+HP H+  PG+C  CL ERL  F +++         I S S S+ SS S  
Sbjct: 24 KTKNAVFCKKHPKHRQSPGVCSLCLNERLSLFIKAASSRRPRSRQILSTSSSTTSSLSSD 83

The following BLAST results are available for this feature:

BLAST of Spg030020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989609.1	5.8e-41	66.90	uncharacterized protein LOC111486643 [Cucurbita maxima]	[more]
XP_023544931.1	2.9e-40	65.52	uncharacterized protein LOC111804380 [Cucurbita pepo subsp. pepo]	[more]
XP_022929275.1	2.4e-39	69.72	uncharacterized protein LOC111435907 [Cucurbita moschata]	[more]
XP_023553119.1	4.1e-39	68.75	uncharacterized protein LOC111810620 [Cucurbita pepo subsp. pepo]	[more]
XP_022985135.1	1.6e-38	67.81	uncharacterized protein LOC111483218, partial [Cucurbita maxima]	[more]

BLAST of Spg030020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPT9	2.8e-41	66.90	uncharacterized protein LOC111486643 OS=Cucurbita maxima OX=3661 GN=LOC111486643...	[more]
A0A6J1ETY8	1.2e-39	69.72	uncharacterized protein LOC111435907 OS=Cucurbita moschata OX=3662 GN=LOC1114359...	[more]
A0A6J1JAI6	7.6e-39	67.81	uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218...	[more]
A0A5D3CZT1	3.5e-36	68.94	DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BWL8	3.5e-36	68.94	uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=...	[more]

BLAST of Spg030020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22470.1	3.5e-04	47.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G35210.1	3.5e-04	39.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008004	Protein OCTOPUS-like	PFAM	PF05340	DUF740	coord: 6..82 e-value: 9.4E-8 score: 31.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..82
None	No IPR available	PANTHER	PTHR34046:SF18	RAPIDLY ELICITED PROTEIN, PUTATIVE-RELATED	coord: 1..117
None	No IPR available	PANTHER	PTHR34046	OS06G0218800 PROTEIN	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030020.1	Spg030020.1	mRNA