Spg029970 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029970
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold6: 10175675 .. 10176676 (-)
RNA-Seq Expression	Spg029970
Synteny	Spg029970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTGCGTGTGCACGCGAGTGATGCAGTTCAATTTTGCATTCGGTTTTTGAATCCTAAACATAGTCGAATTGAATTTTTTTAGTTTATTATTAATATTTAACTTAAATAGAACCATATTAACTATTGAAACTTAAAATTGGGTTTAGTTTTTTTTATTTTATCGGTTTTGATGTTCACCCTATCAATAATAACCATGTTATTGTCAATATTGCTCATTCCATGTAGAATGTAAGGACCGCTTACATCCAAACACAATATTTGTTTTTAAAGGACAAAGCTTTTAATTTGACTAAGTCCACATATCGTAACAAAATTTGAATGATATGTTCACGTATATGTTTAATGACACATCATTTTTTTGTTAACCTATTTTATTAATGTTTTAATCTAATTTATGAAGAATTTTAATTTAATATGATAAAAGTAAATTCGATATTAATTTTGGATCCTTTTGTTTGTATGTTTTTCTTACGTGACATCGATGTCAAACTCAAATCACATCATGACACTTGATTTGCAAGTTGTTATCGTGAAAGCTACAACCACTTATAAAAGTCAAATATTTATTTAAATGATGTGACTACAAGATTTGTTGATGTTCTTTTTAGGAAAAACTTAAACTTTAATTAGAGACGAGCAATTGCTCTCATAAAGGAAAACATATGTGGGACAGGGTCCTCAACTGATGTGATTTACATGACCAAAATCCACCTCATTAAGGGATAATAACCAAGACGAGAAACAGAGTGGTGGGATTGGCTGGATTATAAGTCGGAACGATGGGTCTTTGGTGGTAGCAGGGCATAGATGCATCAAAAGACCGTGGAGTATAAGTTGGCTTGAAGCTTTAGTAGCAACAGAGGGGTTGAAATTGATGTCAGATCAATCTCCAGGTGTTCGTGTAGAGCTTGATTGCCTTCAGGTGGTTAAGCTTCTCAATGATAAGGAGGAAGATGTTACTGAGTTGTGGAATTTCATCTTGGAAGCGAAAGCCTAG

mRNA sequence

ATGGGTGTGCGTGTGCACGCGAGTGATGCAGTTCAATTTTGCATTCGGGATAATAACCAAGACGAGAAACAGAGTGGTGGGATTGGCTGGATTATAAGTCGGAACGATGGGTCTTTGGTGGTAGCAGGGCATAGATGCATCAAAAGACCGTGGAGTATAAGTTGGCTTGAAGCTTTAGTAGCAACAGAGGGGTTGAAATTGATGTCAGATCAATCTCCAGGTGTTCGTGTAGAGCTTGATTGCCTTCAGGTGGTTAAGCTTCTCAATGATAAGGAGGAAGATGTTACTGAGTTGTGGAATTTCATCTTGGAAGCGAAAGCCTAG

Coding sequence (CDS)

ATGGGTGTGCGTGTGCACGCGAGTGATGCAGTTCAATTTTGCATTCGGGATAATAACCAAGACGAGAAACAGAGTGGTGGGATTGGCTGGATTATAAGTCGGAACGATGGGTCTTTGGTGGTAGCAGGGCATAGATGCATCAAAAGACCGTGGAGTATAAGTTGGCTTGAAGCTTTAGTAGCAACAGAGGGGTTGAAATTGATGTCAGATCAATCTCCAGGTGTTCGTGTAGAGCTTGATTGCCTTCAGGTGGTTAAGCTTCTCAATGATAAGGAGGAAGATGTTACTGAGTTGTGGAATTTCATCTTGGAAGCGAAAGCCTAG

Protein sequence

MGVRVHASDAVQFCIRDNNQDEKQSGGIGWIISRNDGSLVVAGHRCIKRPWSISWLEALVATEGLKLMSDQSPGVRVELDCLQVVKLLNDKEEDVTELWNFILEAKA

Homology

[Close]

BLAST of Spg029970 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 21  DEKQSGGIGWIISRNDGSLVVAGHRCIKRPWSISWLEALVATEGLKLMSDQS--PGVRVE 80
           D    GGIGWII   DG +V+AG+R ++   ++  LEA    EGL+ +++      + +E
Sbjct: 89  DSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIE 148

Query: 81  LDCLQVVKLLNDKEEDVTE 98
            D  +V  LLN K ED+T+
Sbjct: 149 TDSAEVESLLNRKREDLTK 167

[Close]

BLAST of Spg029970 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 21  DEKQSGGIGWIISRNDGSLVVAGHRCIKRPWSISWLEALVATEGLKLMSDQS--PGVRVE 80
           D    GGIGWII   DG +V+AG+R ++   ++  LEA    EGL+ +++      + +E
Sbjct: 89  DSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIE 148

Query: 81  LDCLQVVKLLNDKEEDVTE 98
            D  +V  LLN K ED+T+
Sbjct: 149 TDSAEVESLLNRKREDLTK 167

The following BLAST results are available for this feature:

BLAST of Spg029970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	3.4e-04	37.97	uncharacterized protein LOC111022403 [Momordica charantia]	[more]

BLAST of Spg029970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.6e-04	37.97	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Spg029970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 20..102 e-value: 4.4E-7 score: 29.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029970.1	Spg029970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity