Spg029953 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029953
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase III subunit RPC5
Location	scaffold6: 9863528 .. 9871275 (+)
RNA-Seq Expression	Spg029953
Synteny	Spg029953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAATAAAACAAACATTATTTTTGCCAACTCGGACCTAGTTTAAATAGTTAAAGAGTCTAAACCACGTATCATCCACCAAGAGATGAAATTTCCACTTCACATATTAAACTTAAAAAAGCTCATTACCTTTCTCCAGTCCTAAGTAAAAGTAAAATATACACTTGAAAAAAAAAAAAAAAACTGAAATAAATCTCAAAAAGTTTTTTAAGGAAAAAAAAAAACCTAAAAACGTTTAGGGAAAAAATAATTGGGGCGGCAGAACAAGTTATTCATCTTCGCCGGAGCAGTTGCTGGTGAGTTAACCTGCTTGATTGCGATTAGAACAAAAAACCTCACCTTCTTCATCGGCGCTTCCGAGTCCGAGAACTTCAAACAGTTGCAGAAGCTTTTCAGTGTTCATTCACCAAGGGAGAGGAGCGCGCCGAAACCTTCAGGATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTCGCTCCCAAGGCCTCTAAATTGAAGCCGAAACCGAAATCGGATGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGCCGGAACCTCAACCTCCCGTTTCGAAGCCGGAACTTGCAGAGCCGGATGCTCGAATTGGGGAGAAGAAGGAAGAAGCTGAAGAAGTTGAAGTGAAGCCTAAAGTTGAACCCTCGCTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGCCAGAGGCTGAAGAAGAGACAATGGTGGATGATGATCCAATGGAAGAGGATACTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTTACTCCTTCAGCTGATATCAATTCGAAAGTTAGTCTTCGTTGCTTTTGTAATTCATGCGCTGTGTGCCATTCGTTTTCTTTCTTTACATTTAGCCCATTTCGAAGTTTTAACTTTGACAATCATCTATTACAGTTATACGTATTGCAATATCCTCTGAGACCACGCTGGAGGCCCTACGAATTTGAGGGGCGATGTGAAGAGGTCAGCATTTTCTTATATTCCTTTTTATTCTGAAAGAATTTGAACCATACTCTTTTAGTTTTAACAGGTGAGAGTTAAACCTAGCAGTGGAGAAGTTGAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAATAAGGCTGATGACAGTTTGCAAATGAAGAAGCAGGTACCTTCTCTCATGGTTCTATTGATTACTAGTCTATAATTGCTGTTAAAATCCGCAGGGTATTTGGGGATTTATTAGTTTACTGGTAGTCCACTTGTATGATTAAACTTGCAGATCGCATCAGATTTAACTTGAAAAACATGTTAAAGTTGGAAATTTTCCAAAAGATTAAGAGTGCAAGTTTTATTGAACCAATTATGCAATAGTTGCTAGTTGCATCTAAGTTCCTTTCTTTCTTGTTTTCCTCGTCATATTAGTCTTGAGATCTTTTTTCACTTGGTGAACTATATTTTACCTGGTAATAGAGTTTTTTCTTTCATGTGCTATATTCGACTGAGGATTGAGTTATTGTTGGCGCTTTATTTTAGTGGTTACCAACAAAAGGTTGTTTTTGGTTCAGACTTTGACATCTTCATGGCAACCACCTCTAGCAACTACCTATGCTGTTGGGCTGCTTACGGGTAATCAGGTTGCTTCTATATCTCACATCTTCTGAACTTCACTCTTTTTTTGACATCGAATCTACTGCAGTTGATGCACCCTTTTGCTTGTATGTTGTTCCGGTACTTGGTTTATTCTTAATGACACGGTTTAATTATCTCTATATCTAATTCATCGCATCAAAGAAATGTCTTGTTTGTTAATTTATTTACATTGATTTTGTTTTTGTTCACAAAGAATCAAAACTTTTCATTGTTTTTGTTTGCAAAAAACCACCATAGGTCAACTTAGTGGTTAATAAGAGCAGATGTAAATAGTATAAAATTTAGAAGGATCAAGCCATAGGTACAAGTTTTATTGGCAATGGCAACCAAATATAGTAGGGTAAAATAGATATGCTTTCAGAATAGTTAAGGTGCGTGAAAGTTGGTCCAACCACTCACAAATATTAAAAAAAAAAAAGCCATACCTCCACCAATAATCTAAACCACCCAAAGTAAGAAAATTAATTTCAAACGCAATACTTCCCACTCCGAAGCCAAACCCTACAACTCAAAAAGGTTTCCTTTAAGAATTAATACTAAAAGAGGAATAATTATGAAACACTTTAGACATAGCACACCAAGAAGTCACATTTAGCTTAATAATATCACATTCATCCACCGAGTCTTCAAATAAATGTTGGATTCTTTTCCAACTAAATACCTCCACAAAATTGACTTGACCATATATAATATACATAGAATTTTTGCCTTCTTCTTAAAACTCTGACTGCAAAGGAGTCGGAAAAGATATATTTCAACTTTACAATCGAACACCCACAAACATCCAAAGCCTTGCAGCAACCACTCTCAAACATTCCTACTGTAGGAGCAATGAGAAAACACATTCTGAAGATCCTCCTCTGCATTCAGGCACAACATACAGCAGCTCGGATTTGAAGACCAAAATGGACATTTTCTTATAATTTTATCTACCATATTTAGATTTTCCAAGAAGATCAACTAAGATAAATATTTACTTTTATTGTTTTGATTTCCACAAAGCTAACAAAAATGATTCAGGAAGGGAAGGTGTCTGCTGCTAGCTCTCTGACTGGTGATTTTACTGAAACATTCCTGAATTACCCAATTTCTAGCTTCTTTATAGTGTTAGTGCTGGACTTCGCATGTTAGGCTATATAGATTCAATAGAAAATGAGAAATTGCAAGATGCAGAAAACAAGTGCCCTTTTATTTGGAGGAACTGTTATGCCCTTTTACATTCAACCACTGTTTAAATTACTCAATGGTCTCAGGAAGATGTTAACGTAATCTAATTGGCATATGAAAAATGTGAAATGGGGGGTAATTAATTTTGTATTTTGAAGCCTTCTGTAGTTTATCATAGATACTTCAAGGTACCTGCGCTCTCAGATCACCCCATTTGACATCAATCTTTGTATCACCTGTCAGATACGTAACCAAATTTCAGAGAGAATATTTAGGATGACACCGTGGTAACCTAATTACTTCATGACACCTTCCATTTTTATCTATACCTTTGATGAACATCACTTCATCTCTTTGAGTGTAACGTTATACTGAAGAATAAAAAGTTATACTTGCATGTGACTTTATTCCTTTCTTGCGAAAGTATCCTTTGGGCTGCAGGCACAAACTAAACTTGTATTTTGTACGGGTGAATTAAAGAATGTTGCACCCTGCAGGATCTTATATCATTGTTTGTAATTGGTTGAATGGGAAACCTAGATTTTGTACTTTGTATAATTGGTTTTTTTATTCTTACATATTAGAATGAACTTAAGAAGATTATAAGTTCTTATGCATTCCCTAATTTATATTATGATTGCCAAAATAATTTTTGAATTCTAGCACAAGGTTTTGTTTGTTTCTATTTGTTTTAAAAAATAAATAACTATTGATAGTGTGTCCATGGGTTTTATTGCAGCTACACCTGAATCCCATACATGCAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAAACAATGTTAGAGCTGATCCAGATGTTAAGTCAGAAGAGCCTACAGATAACTCTGCAACTGCATCAAGGAAGCAGGTTATTTTCTATTTTTCTATTTGATTCTATAAAACTGCTGGATACTGAAAACTATCTTGGAAAATCTGCTGATTATGTTTGTTTGGAGACTGTAAAGTAATCAAAATTGTCATTAATTCAAAATACCTTTTTATTTCGCCTCTAGACATTATTCTTGGAATGAGCCTATTGCAGTAGCAAACATATTTGGGTAGGATGAGATATTACAGGGTTATGCAATATTATAATAATCATTGATGAAGCGCTCTTAAGTACAAATTCAAATGTGTGCAGCTGTAGATTAGATATTGTTCTCCACATTTTACAGCCCTTGCCCCTTAGTAGTGCTTTAGCACTTTCAGCTAGACATCTAGCTACATGATAGAACCATGGTAAGGAGGATAGGACCATGAGCGATTAATTATTTGTCAGTTTATTATTACTTAATATATGAGTGGGAGTTGTTTCCATTGGGAAAGGAATGGGGGGGGGGGGGGGGGATCCATCAGATGGAAAATGAAAACTATTAGCCCCACACAAGGTTTGTGGATAAGTGGTTGTTTGATGATGAGCTAGGAATGTCTATTTTTTTTTTTTTTTTTGGTAAGAAACCGAACTTTCATTGAACAAATGAAAGAATACAAGGCATACAAAAAAACCAGTCCAAGCCAAAGGGGTGACCGACAAAACTACAAAAACGGACTCCAATCCAAAAGAACGAGACCAATATCATAATTACAAAAAGGTCTAATGATCAACACCCATAAGGAAGAATTAACCTAACTAACTCCCAAACTTCCTCGCCTGATCTCTCCTTATCCCTAAAGATCCTATTATTTCTCTCAAGCCAAACACCCCACAACACAGCAAAAGAACAAGCCTGCCACAGCACATTGCCTCTCTCCCGGAAGGGAGGATGTAAGAGCACCTCCCCCACCAACCCTCACCCATCTTTGTTACGCGGTCCACTAACACCAAACGACCTTCTCCAACGATCCCAAAGGAAATTAGCAAATTGACGCTCCCACAACAAATGATGCAAACCCTCCTCATAGCTTTTGCAAAGTATGCACCATTGAAGAAGCAAAACTAAGGAAGAATGCCTTTAAACACAATACAAAGTGTTAACCTTTCTAAGCAAGACTTGCCAAGCAAAAAGCTTTACATTCTTAGGAATTTTAACCTTCCAGAGATTGGCAAATATAGAAGCCTCAAGAGCAGCATGGGAAGCAGAAAAGAGGGACAAGGAATGAAAATAGGAATGGTAGGAGAAACCCCTAGACAGGTCTGGGAACCAAACGCTGATATCCCTCCTCCCAAGAAGGAATAAACTGATTTCGAAGAATATAAGGAGGTCTGCCACATCTATCGCCTCCCTATCGGAAAGAGGGCGACGAAAACCTAGAGAAATTGAGGAAACAGGGTCAGGAGAAGGCAACACAGAGGCTGCCTAATGCAACCTCTTATCTGGCAGACGATAGAGACGAGGGAATAAGATACATTAAGGTTTATCGCCCACCCACGTGTCTTCCCGAAAGTAAACATCAGAGCCTTCCCCCACATGGCATCTAACAAACTGAGAGGAAGGGAAACAAGAAGAGATAGCTTTCCAAAGGTTTTTGTTGAGACCCTCGAATCCCTGCTCAAGCCTCGCTCAAAAGGGTGAGGGCCATACCTACTCACAATCACTCTATACTACAGAGAATCAACTTCTAAAAAGAAGCGCCATAACCATTTAGCCAAAAGAGCCTCATTACATAATCATAGATTCCCAATACCCAAACCTCCGAACTCCACAACCTTGGACACTGACTCCCACTTAACCAAATGGGATCCTCCCCCCTCTTCAACCCCCCCACAAGAAGTTCCTCATTAACTTTTCCAGCTTATTGCTCACAAAGACCGAGATCCTAAACAAGGACATGAAAAAAATTAGGAATCCCATTTAAAACTACTTGGATAAGGGTGAGTCTCCCCTCTTTAGAAAAGAAAGCATTTTTCCAACTAGCCAACCTTCTCTGAAACTTCTCCACTACCGACTCCCATAACCCTTGGGTTTTAGGATTACCTCCCAAAGGGAGCCTAGGTAAGTGGAAGGAAATTGACCAACCTCACATCCCACCAACTCCGCCAAAGTCCCCAACTTGGAGGGGCAACAATTTAACCTGAAAATGGAACTCTTCTCTCTGTTAATCTTAAGGCCTGAAATCGCTTCAAAAAAGGACAAAAATTTGTTAAGGTTAACAAAAGAACTCTCCCGACCAGAGCAAAAAAAGAGAGTATTGTCAGCAAACTGAAGATGAGACAGGTGAACCGCGTCCTTCCCCACCTTAAAACTCTCCATCACTCCTTGATCCACTCCTGTCGTCACAAGTCTACTGAGGACATCCACCACTAAAAGAAAAAGAAAAGGCAATGAAGGACATCCACCTTAAAACCCTCCATCACTCCTTGCTTAATTCCCCTCGTCGCAAATATCTTACCTCTAGGCCTCCCACAAAGATAGAAAAATTCGTAGACCTCACACAAGTCCACATCCAAGCTCTCCATTTAACCCCAAAAACCTTTTGCCTCCAAAACTCTATCCAGAAAATTCCAATCCACATGGTCATACGCCTTCTTAAAATCAATCTTGAAGGCCACCCCCTTCTCTTTCCTCCTCCTATAGGAATGTCTATCTTTTTGCTAAACAAGATGTGTTGAACTCATAATTCATTAAATTCATAGAGATGATAGTTCATTCCATCGCCACTCGCCAGTCACAAGTAGTAAAAAGGGAAAAGTATATTTGGCATAGAGATAGCCTTATTGGAAGACTATTTATTTGTATTTGCAACTTTATATTTTTCCTTTCAATACTCTGTTTCTTATTCTTTGAACTTTTGTACCGTTTTGTTGGAACAGAAGAAGCAACCAGGACCTTCAACGGAACTTAAAACTGGAGATGAAGAGGTAACATCATTGACCTTGCATATTGAACTGATATCTACCAAACACCATATGTTAGGTTAATAATTTTTTTTTGGTTTCATTTTCATTTTAAATCTAATATAAAACATCTTTTCTTGGCCAATGGCTCTTTCTTTGAAGTACCCAATTACTAGTCAGTTTAAGATAGTTTCTGAGAAAAGTATTTTTAAGTGAGAGTATTTCTTCTCTTCCACTGTTGGAAGAATAGCTAATTAATTGTTGCTTCTAAAAGCACTTTGAGTGCTTTTTTAAGAAGTGTTCTGAGGATTTTCAAAATTGTTTTTTACTATTCAACCACACACCATGAACATTTTGAAAATTGTTCTTAATTAACAAAAATCATTTTCACCTTCTGAAAAGTCATCTCAAACTTAGAAAAAAGGTGTCTGACTATTGAATCTATCATTATACAGTTTTCTAATGTTGTTTGGTTCACTCTTTCTGTAGTGCTGGATTCCACTTAAGTACTATGGCCTAGAGAGTGATCTATCAACCAGATATCAGCGAAGCATGGTGGCAAAGAAAATTTCCCCTATACAATTTTCAATGAGCCCGTATGTGTTTTTTGCTTACCCATGCATATAATCTTTAATGGCAGTTAATTTCTGTGAGAGTACTAGTTAGGGATAATTGGGAATAGTATTAGAAGGGTAGTAAGGGTATAATAGTAAATAGATAGGGAGCCTTGGTTGTGCCTTGGTTATAAATATGGGAATTAAGGAGTCTTAGGGGTGTGGAGAATTTTGGTATTGTCTCATAGTGAGACTTTGGGAGAGAGTTAGCCCTCTCGAAAGGCTATCGACTAAGAAGCACGGACACGGACACGACAGGACACGGCGATACGTCAATTTCTAAAAAACTAAGATACGGATACGTGGAGGATCCGTTGTTTTTTTTTTTTTTTAAATTTTTTTTTAGTATATATATAAATTTAACATAAAAATACTAAAATTACACCACTAAAAAGCCTGAAACCTTTAAGGGCCTGTTTGGTTTAAGGTTTTATAGATGCCTGAGAATACATGATGCCTGGGAATACTATGCCTGGGAATAA

mRNA sequence

ATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTCGCTCCCAAGGCCTCTAAATTGAAGCCGAAACCGAAATCGGATGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGCCGGAACCTCAACCTCCCGTTTCGAAGCCGGAACTTGCAGAGCCGGATGCTCGAATTGGGGAGAAGAAGGAAGAAGCTGAAGAAGTTGAAGTGAAGCCTAAAGTTGAACCCTCGCTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGCCAGAGGCTGAAGAAGAGACAATGGTGGATGATGATCCAATGGAAGAGGATACTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTTACTCCTTCAGCTGATATCAATTCGAAATTATACGTATTGCAATATCCTCTGAGACCACGCTGGAGGCCCTACGAATTTGAGGGGCGATGTGAAGAGGTGAGAGTTAAACCTAGCAGTGGAGAAGTTGAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAATAAGGCTGATGACAGTTTGCAAATGAAGAAGCAGACTTTGACATCTTCATGGCAACCACCTCTAGCAACTACCTATGCTGTTGGGCTGCTTACGGGTAATCAGCTACACCTGAATCCCATACATGCAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAAACAATGTTAGAGCTGATCCAGATGTTAAGTCAGAAGAGCCTACAGATAACTCTGCAACTGCATCAAGGAAGCAGGGCGACGAAAACCTAGAGAAATTGAGGAAACAGGGTCAGGAGAAGGCAACACAGAGGCTGCCTAATGCAACCTCTTATCTGGCAGACGATAGAGACGAGGGAATAAGATACATTAAGAAGAAGCAACCAGGACCTTCAACGGAACTTAAAACTGGAGATGAAGAGTGCTGGATTCCACTTAAGTACTATGGCCTAGAGAGTGATCTATCAACCAGATATCAGCGAAGCATGGTGGCAAAGAAAATTTCCCCTATACAATTTTCAATGAGCCCATGCCTGAGAATACATGATGCCTGGGAATACTATGCCTGGGAATAA

Coding sequence (CDS)

ATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTCGCTCCCAAGGCCTCTAAATTGAAGCCGAAACCGAAATCGGATGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGCCGGAACCTCAACCTCCCGTTTCGAAGCCGGAACTTGCAGAGCCGGATGCTCGAATTGGGGAGAAGAAGGAAGAAGCTGAAGAAGTTGAAGTGAAGCCTAAAGTTGAACCCTCGCTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGCCAGAGGCTGAAGAAGAGACAATGGTGGATGATGATCCAATGGAAGAGGATACTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTTACTCCTTCAGCTGATATCAATTCGAAATTATACGTATTGCAATATCCTCTGAGACCACGCTGGAGGCCCTACGAATTTGAGGGGCGATGTGAAGAGGTGAGAGTTAAACCTAGCAGTGGAGAAGTTGAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAATAAGGCTGATGACAGTTTGCAAATGAAGAAGCAGACTTTGACATCTTCATGGCAACCACCTCTAGCAACTACCTATGCTGTTGGGCTGCTTACGGGTAATCAGCTACACCTGAATCCCATACATGCAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAAACAATGTTAGAGCTGATCCAGATGTTAAGTCAGAAGAGCCTACAGATAACTCTGCAACTGCATCAAGGAAGCAGGGCGACGAAAACCTAGAGAAATTGAGGAAACAGGGTCAGGAGAAGGCAACACAGAGGCTGCCTAATGCAACCTCTTATCTGGCAGACGATAGAGACGAGGGAATAAGATACATTAAGAAGAAGCAACCAGGACCTTCAACGGAACTTAAAACTGGAGATGAAGAGTGCTGGATTCCACTTAAGTACTATGGCCTAGAGAGTGATCTATCAACCAGATATCAGCGAAGCATGGTGGCAAAGAAAATTTCCCCTATACAATTTTCAATGAGCCCATGCCTGAGAATACATGATGCCTGGGAATACTATGCCTGGGAATAA

Protein sequence

MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFSMSPCLRIHDAWEYYAWE

Homology

[Close]

BLAST of Spg029953 vs. NCBI nr
Match: XP_038876786.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Benincasa hispida])

HSP 1 Score: 534.3 bits (1375), Expect = 8.7e-148
Identity = 289/363 (79.61%), Postives = 303/363 (83.47%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAE 60
           MDLDDLDE SQV SRTSRFAPKASK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ E
Sbjct: 1   MDLDDLDEQSQVRSRTSRFAPKASKFKPKPKSEVVPKPEPQQPPTKSEPQPPVSKPEVTE 60

Query: 61  PDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSEDMV 120
           PDARIGEKKEE EEVE+KPKVEPSLPNGVAKMDVETK E EEETMVDDDPMEED SEDMV
Sbjct: 61  PDARIGEKKEEGEEVEIKPKVEPSLPNGVAKMDVETKSEVEEETMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIES 180
           VREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKPSSGEVEVDLNVDIES
Sbjct: 121 VREIDVLFTPSPDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSSGEVEVDLNVDIES 180

Query: 181 NNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNS 240
           NNYD+KAD SLQMKKQTLTSSWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADGSLQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA 300
           GGPKRKN+VRADPDVKSEE  D NSA ASRKQ                            
Sbjct: 241 GGPKRKNSVRADPDVKSEEHVDVNSAGASRKQ---------------------------- 300

Query: 301 DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFS 360
                      KKQ GPSTELKTGDEECWIPLKYYG ESDLSTR+ RSMVA+  +P+QFS
Sbjct: 301 -----------KKQTGPSTELKTGDEECWIPLKYYGQESDLSTRHLRSMVAQTAAPMQFS 324

Query: 361 MSP 363
           MSP
Sbjct: 361 MSP 324

[Close]

BLAST of Spg029953 vs. NCBI nr
Match: XP_038876785.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida])

HSP 1 Score: 534.3 bits (1375), Expect = 8.7e-148
Identity = 289/363 (79.61%), Postives = 303/363 (83.47%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAE 60
           MDLDDLDE SQV SRTSRFAPKASK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ E
Sbjct: 1   MDLDDLDEQSQVRSRTSRFAPKASKFKPKPKSEVVPKPEPQQPPTKSEPQPPVSKPEVTE 60

Query: 61  PDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSEDMV 120
           PDARIGEKKEE EEVE+KPKVEPSLPNGVAKMDVETK E EEETMVDDDPMEED SEDMV
Sbjct: 61  PDARIGEKKEEGEEVEIKPKVEPSLPNGVAKMDVETKSEVEEETMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIES 180
           VREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKPSSGEVEVDLNVDIES
Sbjct: 121 VREIDVLFTPSPDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSSGEVEVDLNVDIES 180

Query: 181 NNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNS 240
           NNYD+KAD SLQMKKQTLTSSWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADGSLQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA 300
           GGPKRKN+VRADPDVKSEE  D NSA ASRKQ                            
Sbjct: 241 GGPKRKNSVRADPDVKSEEHVDVNSAGASRKQ---------------------------- 300

Query: 301 DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFS 360
                      KKQ GPSTELKTGDEECWIPLKYYG ESDLSTR+ RSMVA+  +P+QFS
Sbjct: 301 -----------KKQTGPSTELKTGDEECWIPLKYYGQESDLSTRHLRSMVAQTAAPMQFS 324

Query: 361 MSP 363
           MSP
Sbjct: 361 MSP 324

[Close]

BLAST of Spg029953 vs. NCBI nr
Match: XP_022136590.1 (DNA-directed RNA polymerase III subunit RPC5 [Momordica charantia])

HSP 1 Score: 523.5 bits (1347), Expect = 1.5e-144
Identity = 291/365 (79.73%), Postives = 298/365 (81.64%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PEL 60
           MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTKPEP+PP SK  PEL
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPEL 60

Query: 61  AEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSED 120
            EPDA  GEKKEE EEVEVKPKVE SLPNGV KMDVETK EAEEETMV DDPMEED SED
Sbjct: 61  VEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKSEAEEETMV-DDPMEEDVSED 120

Query: 121 MVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDI 180
           MVVREIDVLFTPSADINSKLYVLQYPLRP WRPYEFEGRCEEVRVKPSSGEVEVDLNVDI
Sbjct: 121 MVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDI 180

Query: 181 ESNNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHL 240
           ESNNYD+KA+ SLQMKKQTLTSSWQPPLATTYAVGLL GN+LHLNPIHAVVQLRPS EHL
Sbjct: 181 ESNNYDSKAEGSLQMKKQTLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHL 240

Query: 241 NSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSY 300
           NSGGPKRKN VR DPDVK EE  D NSA ASRKQ                          
Sbjct: 241 NSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQ-------------------------- 300

Query: 301 LADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQ 360
                        KKQ G STELKTGD+ECWIPLKYYGLESDLSTRYQRSMVA+K SPIQ
Sbjct: 301 -------------KKQTGSSTELKTGDDECWIPLKYYGLESDLSTRYQRSMVAQKSSPIQ 325

Query: 361 FSMSP 363
           FSMSP
Sbjct: 361 FSMSP 325

[Close]

BLAST of Spg029953 vs. NCBI nr
Match: XP_008453719.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo])

HSP 1 Score: 521.5 bits (1342), Expect = 5.8e-144
Identity = 280/363 (77.13%), Postives = 301/363 (82.92%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAE 60
           MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ E
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSEDMV 120
           PDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E EE+TMVDDDPMEED SEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIES 180
           VREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNS 240
           NNYD+KADD+ QMKKQTLTSSWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA 300
           GGPKRKNN+RAD DVKSEE  D NSA ASRKQ                            
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQ---------------------------- 300

Query: 301 DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFS 360
                      KKQ GPSTELKT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFS
Sbjct: 301 -----------KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFS 324

Query: 361 MSP 363
           MSP
Sbjct: 361 MSP 324

[Close]

BLAST of Spg029953 vs. NCBI nr
Match: XP_008453720.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucumis melo])

HSP 1 Score: 521.5 bits (1342), Expect = 5.8e-144
Identity = 280/363 (77.13%), Postives = 301/363 (82.92%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAE 60
           MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ E
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSEDMV 120
           PDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E EE+TMVDDDPMEED SEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIES 180
           VREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNS 240
           NNYD+KADD+ QMKKQTLTSSWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA 300
           GGPKRKNN+RAD DVKSEE  D NSA ASRKQ                            
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQ---------------------------- 300

Query: 301 DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFS 360
                      KKQ GPSTELKT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFS
Sbjct: 301 -----------KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFS 324

Query: 361 MSP 363
           MSP
Sbjct: 361 MSP 324

[Close]

BLAST of Spg029953 vs. ExPASy Swiss-Prot
Match: Q9CZT4 (DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-13
Identity = 66/263 (25.10%), Postives = 116/263 (44.11%), Query Frame = 0


Query: 117 EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNV 176
           +D V++EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +
Sbjct: 6   DDPVIQEIDVYLAKS--LAEKLYLFQYPVRPASMTYDDIPHL-SAKIKPKQQKVELEMAI 65

Query: 177 DIESNNY------------------DNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGN 236
           D  + NY                  +     S  M KQT  SS        YA  L    
Sbjct: 66  DTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYAAALYRQG 125

Query: 237 QLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEK 296
           +LHL P+H ++QLRPSF +L+          +AD   +  E  + +  +S+ + +E++++
Sbjct: 126 ELHLTPLHGILQLRPSFSYLD----------KADAKHREREAANEAGDSSQDEAEEDVKQ 185

Query: 297 L----RKQGQEKATQRLPNATSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYY 356
           +     +   E+A QR           R +   +++KK            EE W+ L YY
Sbjct: 186 ITVRFSRPESEQARQR-----------RVQSYEFLQKKHA----------EEPWVHLHYY 234

Query: 357 GLESDLSTRYQRSMVAKKISPIQ 358
           G+    S   ++ ++ +  S ++
Sbjct: 246 GMRDSRSEHERQYLLCQGSSGVE 234

[Close]

BLAST of Spg029953 vs. ExPASy Swiss-Prot
Match: Q9NVU0 (DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.8e-13
Identity = 67/263 (25.48%), Postives = 116/263 (44.11%), Query Frame = 0


Query: 117 EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNV 176
           +D VV+EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +
Sbjct: 6   DDPVVQEIDVYLAKS--LAEKLYLFQYPVRPASMTYDDIPHL-SAKIKPKQQKVELEMAI 65

Query: 177 DIESNNY------------------DNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGN 236
           D  + NY                  +     S  M KQT  SS      + YA  L    
Sbjct: 66  DTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQG 125

Query: 237 QLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEK 296
           +LHL P+H ++QLRPSF +L+          +AD   +  E  + +  +S+ + ++++++
Sbjct: 126 ELHLTPLHGILQLRPSFSYLD----------KADAKHREREAANEAGDSSQDEAEDDVKQ 185

Query: 297 L----RKQGQEKATQRLPNATSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYY 356
           +     +   E+A QR           R +   +++KK            EE W+ L YY
Sbjct: 186 ITVRFSRPESEQARQR-----------RVQSYEFLQKKHA----------EEPWVHLHYY 234

Query: 357 GLESDLSTRYQRSMVAKKISPIQ 358
           GL    S   ++ ++    S ++
Sbjct: 246 GLRDSRSEHERQYLLCPGSSGVE 234

[Close]

BLAST of Spg029953 vs. ExPASy Swiss-Prot
Match: O74883 (DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc37 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-10
Identity = 54/157 (34.39%), Postives = 84/157 (53.50%), Query Frame = 0


Query: 96  TKPEAEEETMVDDDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPY-EF 155
           ++ +A EE  + +D  EE   +D VVR   V F+P   + + L + Q+PLRP+ R Y + 
Sbjct: 4   SEDQAMEEAKLRNDETEE---QDPVVRTYPVFFSPG--LRNNLLLNQFPLRPKNRTYSDA 63

Query: 156 EGRCE-EVRVKPSSGEVEVDLNVDIESNNYDNKA----DDSLQMKKQTLTSSWQPPLATT 215
            G    +VRVKP +G +EVD+ +       ++KA    +    ++ QTL+   Q P  T 
Sbjct: 64  NGEAPIDVRVKPKTGWMEVDVPIPTTKYYNEDKAMKYGNGKKPIQTQTLSGRLQKP-RTN 123

Query: 216 YAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRK 247
             VGL+   Q H+ P+  + QLRPS +H+N    K K
Sbjct: 124 LMVGLIRDGQFHIVPLRGLTQLRPSMKHVNEYTQKLK 154

[Close]

BLAST of Spg029953 vs. ExPASy TrEMBL
Match: A0A6J1C4C6 (DNA-directed RNA polymerase III subunit RPC5 OS=Momordica charantia OX=3673 GN=LOC111008259 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 7.4e-145
Identity = 291/365 (79.73%), Postives = 298/365 (81.64%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PEL 60
           MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTKPEP+PP SK  PEL
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPEL 60

Query: 61  AEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSED 120
            EPDA  GEKKEE EEVEVKPKVE SLPNGV KMDVETK EAEEETMV DDPMEED SED
Sbjct: 61  VEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKSEAEEETMV-DDPMEEDVSED 120

Query: 121 MVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDI 180
           MVVREIDVLFTPSADINSKLYVLQYPLRP WRPYEFEGRCEEVRVKPSSGEVEVDLNVDI
Sbjct: 121 MVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVDI 180

Query: 181 ESNNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHL 240
           ESNNYD+KA+ SLQMKKQTLTSSWQPPLATTYAVGLL GN+LHLNPIHAVVQLRPS EHL
Sbjct: 181 ESNNYDSKAEGSLQMKKQTLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEHL 240

Query: 241 NSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSY 300
           NSGGPKRKN VR DPDVK EE  D NSA ASRKQ                          
Sbjct: 241 NSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQ-------------------------- 300

Query: 301 LADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQ 360
                        KKQ G STELKTGD+ECWIPLKYYGLESDLSTRYQRSMVA+K SPIQ
Sbjct: 301 -------------KKQTGSSTELKTGDDECWIPLKYYGLESDLSTRYQRSMVAQKSSPIQ 325

Query: 361 FSMSP 363
           FSMSP
Sbjct: 361 FSMSP 325

[Close]

BLAST of Spg029953 vs. ExPASy TrEMBL
Match: A0A1S3BX09 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494365 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.8e-144
Identity = 280/363 (77.13%), Postives = 301/363 (82.92%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAE 60
           MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ E
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSEDMV 120
           PDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E EE+TMVDDDPMEED SEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIES 180
           VREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNS 240
           NNYD+KADD+ QMKKQTLTSSWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA 300
           GGPKRKNN+RAD DVKSEE  D NSA ASRKQ                            
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQ---------------------------- 300

Query: 301 DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFS 360
                      KKQ GPSTELKT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFS
Sbjct: 301 -----------KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFS 324

Query: 361 MSP 363
           MSP
Sbjct: 361 MSP 324

[Close]

BLAST of Spg029953 vs. ExPASy TrEMBL
Match: A0A1S3BWX9 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494365 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.8e-144
Identity = 280/363 (77.13%), Postives = 301/363 (82.92%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAE 60
           MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ E
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSEDMV 120
           PDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E EE+TMVDDDPMEED SEDMV
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMV 120

Query: 121 VREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIES 180
           VREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 181 NNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNS 240
           NNYD+KADD+ QMKKQTLTSSWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNS
Sbjct: 181 NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA 300
           GGPKRKNN+RAD DVKSEE  D NSA ASRKQ                            
Sbjct: 241 GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQ---------------------------- 300

Query: 301 DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFS 360
                      KKQ GPSTELKT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFS
Sbjct: 301 -----------KKQTGPSTELKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFS 324

Query: 361 MSP 363
           MSP
Sbjct: 361 MSP 324

[Close]

BLAST of Spg029953 vs. ExPASy TrEMBL
Match: A0A0A0KUN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 5.0e-141
Identity = 276/363 (76.03%), Postives = 297/363 (81.82%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAE 60
           MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQP TK EPQPP+SKPE+ E
Sbjct: 1   MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 61  PDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMVDDDPMEEDTSEDMV 120
           PDAR+ EKKE+ EEVEVKPKVE SLPNGVAKMDVETK E EE+ MVDDDP+EED SEDMV
Sbjct: 61  PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIEEDASEDMV 120

Query: 121 VREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIES 180
           VREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVEVDLNVDIES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIES 180

Query: 181 NNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNS 240
           NNYDNKAD + QMKKQTLTSSWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNS
Sbjct: 181 NNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 241 GGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYLA 300
           GGPKRKNNVRAD DVKSEE  D NSA ASRKQ                            
Sbjct: 241 GGPKRKNNVRADSDVKSEEHVDVNSAGASRKQ---------------------------- 300

Query: 301 DDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQFS 360
                      KKQ GPSTE+KT DEECWIPLKYYGLESDLSTR+ +SMV++ +SP+QFS
Sbjct: 301 -----------KKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFS 324

Query: 361 MSP 363
           MSP
Sbjct: 361 MSP 324

[Close]

BLAST of Spg029953 vs. ExPASy TrEMBL
Match: A0A6J1EMD6 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435914 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 3.2e-140
Identity = 280/364 (76.92%), Postives = 298/364 (81.87%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAE 60
           MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTK EP+ PVSKPE+AE
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAE 60

Query: 61  PDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETMV-DDDPMEEDTSEDM 120
           PDA IGEKKEE EEVEVKPKVE SLPNGV KMDVETK E EEETMV DDDPMEED SEDM
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120

Query: 121 VVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIE 180
           VVREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKP++GEVEVDLNVDIE
Sbjct: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180

Query: 181 SNNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLN 240
           SNNYD+KAD +LQMKKQTL SSWQPP+AT+YAVGLL G++LHLNP+H VVQLRPSFEHLN
Sbjct: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240

Query: 241 SGGPKRKNNVRADPDVKSEEPTD-NSATASRKQGDENLEKLRKQGQEKATQRLPNATSYL 300
           SGGPKRK NVRADP+VKSEE TD NSA  SRKQ                           
Sbjct: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQ--------------------------- 300

Query: 301 ADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRSMVAKKISPIQF 360
                       KKQ GPSTE KTGDEE WIPLKYYGLESDLSTR+ RSMVA+K SP+QF
Sbjct: 301 ------------KKQTGPSTEPKTGDEESWIPLKYYGLESDLSTRHLRSMVAEKNSPMQF 325

Query: 361 SMSP 363
           SMSP
Sbjct: 361 SMSP 325

[Close]

BLAST of Spg029953 vs. TAIR 10
Match: AT5G49530.1 (SIN-like family protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-55
Identity = 149/381 (39.11%), Postives = 210/381 (55.12%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAP-KASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELA 60
           MD DD D+P +V ++T RFAP +A K KPKPK        P+    KP   PP S+ E  
Sbjct: 1   MDFDDDDKPKEV-TKTRRFAPGRAGKSKPKPK--------PEPTADKPVQPPPQSQTE-- 60

Query: 61  EPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEEETM------------VD 120
                + + + + +   V  KVE  + NG  KM++++K + E E M            + 
Sbjct: 61  ----SVSKTEHDVDAKFVGTKVETEVCNGSVKMEIDSKVDKEPEIMETELMEEDQQLPLQ 120

Query: 121 DDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSS 180
           ++  EE+  +D+VVREIDV F PS D N++LYVLQYPLRP WRPYE + RCEEVRV PS+
Sbjct: 121 EEKEEEEEEDDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPST 180

Query: 181 GEVEVDLNVDIESNNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHA 240
            +VE+DL++D+ S NYD  ++  L M KQTL ++W+ P    YAVG+L+G++LHLNP+HA
Sbjct: 181 SQVEIDLSMDVHSKNYD--SNFGLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHA 240

Query: 241 VVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQGDENLEKLRKQGQEKA 300
           V QLRPS + L+S           D   K EE T+ S   S+KQ          +G ++A
Sbjct: 241 VAQLRPSMQSLSS-----------DKKKKQEESTEESVGTSKKQ---------NKGVQQA 300

Query: 301 TQRLPNATSYLADDRDEGIRYIKKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRS 360
                                        ST+ K  +EE W+ LKY+GL+S+  +RY   
Sbjct: 301 -----------------------------STDQKPINEETWVSLKYHGLQSEYCSRYLNG 315

Query: 361 MVAKKISPIQFSMSPCLRIHD 369
           M+A   S I F+MSP   I++
Sbjct: 361 MMANGNSSIDFNMSPGTYINE 315

The following BLAST results are available for this feature:

BLAST of Spg029953 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876786.1	8.7e-148	79.61	DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Benincasa hispida]	[more]
XP_038876785.1	8.7e-148	79.61	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida]	[more]
XP_022136590.1	1.5e-144	79.73	DNA-directed RNA polymerase III subunit RPC5 [Momordica charantia]	[more]
XP_008453719.1	5.8e-144	77.13	PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo...	[more]
XP_008453720.1	5.8e-144	77.13	PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucumis melo...	[more]

BLAST of Spg029953 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CZT4	2.9e-13	25.10	DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e ...	[more]
Q9NVU0	3.8e-13	25.48	DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E P...	[more]
O74883	1.8e-10	34.39	DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of Spg029953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4C6	7.4e-145	79.73	DNA-directed RNA polymerase III subunit RPC5 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3BX09	2.8e-144	77.13	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A1S3BWX9	2.8e-144	77.13	DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucumis melo OX=3656 ...	[more]
A0A0A0KUN5	5.0e-141	76.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1	[more]
A0A6J1EMD6	3.2e-140	76.92	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita moschata OX...	[more]

BLAST of Spg029953 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49530.1	1.1e-55	39.11	SIN-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PFAM	PF04801	Sin_N	coord: 117..362 e-value: 2.0E-47 score: 162.4
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PANTHER	PTHR12069	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	coord: 107..362
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029953.1	Spg029953.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity