Spg029847 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029847
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Nipped-B-like protein
Location	scaffold6: 7962372 .. 7962788 (+)
RNA-Seq Expression	Spg029847
Synteny	Spg029847

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGTAGACGAACGAAGAAGAAGACGACGTACGTTTACAGAGACGATCTGAGCAAGAAGAAGCAGTCACAGTCGCCGTCGCCGTCGCAGCGGCAGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAACCGGTGATAATCGCCATTGACGGAGAGGAGCGGAGTGCAGAGGAGGAAACAGAGAAGAAAGTGGTGAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTGGAACTCGGAGATGTGGCTTGTGAGCTCATGCGGATTCCTGCTGCGCGAGTTAGCTCTTCCATGGTGGCCAATTGA

mRNA sequence

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGTAGACGAACGAAGAAGAAGACGACGTACGTTTACAGAGACGATCTGAGCAAGAAGAAGCAGTCACAGTCGCCGTCGCCGTCGCAGCGGCAGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAACCGGTGATAATCGCCATTGACGGAGAGGAGCGGAGTGCAGAGGAGGAAACAGAGAAGAAAGTGGTGAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTGGAACTCGGAGATGTGGCTTGTGAGCTCATGCGGATTCCTGCTGCGCGAGTTAGCTCTTCCATGGTGGCCAATTGA

Coding sequence (CDS)

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGTAGACGAACGAAGAAGAAGACGACGTACGTTTACAGAGACGATCTGAGCAAGAAGAAGCAGTCACAGTCGCCGTCGCCGTCGCAGCGGCAGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAACCGGTGATAATCGCCATTGACGGAGAGGAGCGGAGTGCAGAGGAGGAAACAGAGAAGAAAGTGGTGAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTGGAACTCGGAGATGTGGCTTGTGAGCTCATGCGGATTCCTGCTGCGCGAGTTAGCTCTTCCATGGTGGCCAATTGA

Protein sequence

MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQSQSPSPSQRQPEIKKVKKRVRFAETEPVIIAIDGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELGDVACELMRIPAARVSSSMVAN

Homology

[Close]

BLAST of Spg029847 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 217.6 bits (553), Expect = 6.6e-53
Identity = 125/139 (89.93%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQSQSPSPSQRQPEIKKVKK 60
           MISN I SLNKKLQAVEISNRCRRT KKTTYVYRDDLSKKKQS  PS SQ QPEIKKVKK
Sbjct: 1   MISNFILSLNKKLQAVEISNRCRRT-KKTTYVYRDDLSKKKQSPPPSSSQPQPEIKKVKK 60

Query: 61  RVRFAETEPVIIAI-DGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELGDV 120
           RVRFA+TEPVIIAI D EERS EEETEKKVVRITVKLTK+EANRMLSRCSDGGVLE GDV
Sbjct: 61  RVRFADTEPVIIAITDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEFGDV 120

Query: 121 ACELMRIPAARVSSSMVAN 139
           ACELMRIPA RVSSSMVAN
Sbjct: 121 ACELMRIPATRVSSSMVAN 138

[Close]

BLAST of Spg029847 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-51
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQSQSPSPSQRQPEIKKVKK 60
           MI NLISSLNKKLQAVEISNRCRRT KKTT VYR D+SKKKQ QSPSPSQ +PEI+KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRT-KKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAIDGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELGDVA 120
           RVRFA+TEPVIIAID EERS EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLE GDVA
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120

Query: 121 CELMRIPAARVSSSM 136
            ELMRIPAARVSSSM
Sbjct: 121 SELMRIPAARVSSSM 134

[Close]

BLAST of Spg029847 vs. NCBI nr
Match: KAG7015140.1 (hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-48
Identity = 119/138 (86.23%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQSQSPSPSQRQPEIKKVKK 60
           MI NLISSLNKKLQAVEISNRCRRT KKTT VYR D+SKKKQ Q   PSQ +PEI+KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRT-KKTTNVYRGDMSKKKQPQ--LPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAIDGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELGDVA 120
           RVRFA+TEPVIIAID EERS EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLE  DVA
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVA 120

Query: 121 CELMRIPAARVSSSMVAN 139
            ELMRIPAARVSSSMV N
Sbjct: 121 SELMRIPAARVSSSMVVN 135

[Close]

BLAST of Spg029847 vs. NCBI nr
Match: XP_022931429.1 (uncharacterized protein LOC111437608 [Cucurbita moschata])

HSP 1 Score: 202.2 bits (513), Expect = 2.9e-48
Identity = 118/135 (87.41%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQSQSPSPSQRQPEIKKVKK 60
           MI NLISSLNKKLQAVEISNRCRRT KKTT VYR D+SKKKQ Q   PSQ +PEI+KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRT-KKTTNVYRGDMSKKKQPQ--LPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAIDGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELGDVA 120
           RVRFA+TEPVIIAID EERS EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLE GDVA
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120

Query: 121 CELMRIPAARVSSSM 136
            ELMRIPAARVSSSM
Sbjct: 121 SELMRIPAARVSSSM 132

[Close]

BLAST of Spg029847 vs. NCBI nr
Match: KAG6600516.1 (hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031155.1 hypothetical protein SDJN02_05195, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 4.9e-48
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKK---KTTYVYRDDLSKKKQSQSPSPSQRQPEIKK 60
           MISNLISSLNKKLQAVEISNRCRRTKK    TTYVYRDDL+KKKQS S   SQ+QPEIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPS---SQQQPEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDGEERSAEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEL 120
           VKKRVRFAETEPVIIAID     AEEETEKK VVRITVK+TKQEANRMLSRCS+GGVLEL
Sbjct: 61  VKKRVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120

Query: 121 GDVACELMRIPAARVSSSMVAN 139
           GD ACELMRIPAARV SSMVAN
Sbjct: 121 GDAACELMRIPAARVRSSMVAN 134

[Close]

BLAST of Spg029847 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.9e-52
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQSQSPSPSQRQPEIKKVKK 60
           MI NLISSLNKKLQAVEISNRCRRT KKTT VYR D+SKKKQ QSPSPSQ +PEI+KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRT-KKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAIDGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELGDVA 120
           RVRFA+TEPVIIAID EERS EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLE GDVA
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120

Query: 121 CELMRIPAARVSSSM 136
            ELMRIPAARVSSSM
Sbjct: 121 SELMRIPAARVSSSM 134

[Close]

BLAST of Spg029847 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 118/135 (87.41%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQSQSPSPSQRQPEIKKVKK 60
           MI NLISSLNKKLQAVEISNRCRRT KKTT VYR D+SKKKQ Q   PSQ +PEI+KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRT-KKTTNVYRGDMSKKKQPQ--LPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVIIAIDGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELGDVA 120
           RVRFA+TEPVIIAID EERS EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLE GDVA
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120

Query: 121 CELMRIPAARVSSSM 136
            ELMRIPAARVSSSM
Sbjct: 121 SELMRIPAARVSSSM 132

[Close]

BLAST of Spg029847 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.5e-45
Identity = 111/141 (78.72%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQS---QSPSPSQRQPEIKK 60
           MISNLISSLNKKLQAVEISNRC+RT KKTTYVYRDDL+KKK S    S SP  +  EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRT-KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELG 120
           VKKRVRFA+TEPVIIAI  +    EEETEKKVVRITVKLTKQEANRMLSRCS+ GVLE G
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFG 120

Query: 121 DVACELMRIPAARVSSSMVAN 139
           DVA EL+RIP  RVSSS+VAN
Sbjct: 121 DVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Spg029847 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.5e-45
Identity = 111/141 (78.72%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQS---QSPSPSQRQPEIKK 60
           MISNLISSLNKKLQAVEISNRC+RT KKTTYVYRDDL+KKK S    S SP  +  EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRT-KKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFAETEPVIIAIDGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLELG 120
           VKKRVRFA+TEPVIIAI  +    EEETEKKVVRITVKLTKQEANRMLSRCS+ GVLE G
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFG 120

Query: 121 DVACELMRIPAARVSSSMVAN 139
           DVA EL+RIP  RVSSS+VAN
Sbjct: 121 DVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Spg029847 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 110/143 (76.92%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKKTTYVYRDDLSKKKQ---SQSPSPSQRQPEIKK 60
           MISNLISSLNKKLQAVEIS+RC+RT KKT YVYRD+L+KK     S S SP  +  EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRT-KKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFAETEPVIIAI--DGEERSAEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLE 120
           VKKRVRFA+TEPVIIAI  D EE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLE
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 LGDVACELMRIPAARVSSSMVAN 139
            GDVA ELMRIP  RV SS+VAN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

The following BLAST results are available for this feature:

BLAST of Spg029847 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906331.1	6.6e-53	89.93	uncharacterized protein LOC120092170 [Benincasa hispida]	[more]
XP_022985430.1	1.6e-51	89.63	uncharacterized protein LOC111483436 [Cucurbita maxima]	[more]
KAG7015140.1	2.2e-48	86.23	hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022931429.1	2.9e-48	87.41	uncharacterized protein LOC111437608 [Cucurbita moschata]	[more]
KAG6600516.1	4.9e-48	85.92	hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg029847 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBA8	7.9e-52	89.63	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]
A0A6J1EU86	1.4e-48	87.41	uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376...	[more]
A0A5D3D246	5.5e-45	78.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	5.5e-45	78.72	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A0A0KYE1	1.5e-42	76.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]

BLAST of Spg029847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..59
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 1..136
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029847.1	Spg029847.1	mRNA