Spg029743 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029743
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTetratricopeptide-like helical
Locationscaffold6: 10969776 .. 10971678 (-)
RNA-Seq ExpressionSpg029743
SyntenySpg029743
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGACTGGGCTATGGATGCTGAAGAATGGGGAAGCAATATTGCAATGGAGAATGACGTTCCGCCGCATTTATTAGCCGATGAAGACGAAGTCGAAGAAGAAGAAAATATAACAAGACGGTGGTGATGGTGTGCACTGCTTTCCGGCGATGATGTGCCTTTTCCCGAAAAATCATGGAGAAGAGAGCTTGGAAGTTGGAATGGCCTGAACCCAGAGATCCAAGTCTAACGACAAGTGATGGATATTGATAGTTTGCTGTCGGAGATGATTTTTGTTCTTGTTTTTTTTTTTTTTGGACATCAATGTTTTAGGTTGTAATTGAACCAAGTTTGTTAATTATTTGTTTATTTTTTTGGTTGAAGATTTATTGACGTTTTGTCAAATCTTTAATGTAAAGTGGTTGATATGTTGTATAGTAATTATTCGGTTGAATTACAAGTTTAGGCTGTGTTTGATAATTCATTTAGTTTTTGGGTTTTGAAAATTAAGTTTATAAACATTACTTTCGTCTATAAGTTTATTTATTTTGTTATCTACCTTCCTCCCATTTCCATATTTTCAAAAATGAAGTCAAATTTTGAAAAACTAGAATATATATATATATATATATATATATAGTTTTTAAAATTTTGTTTTTGTTTTTGGAAACTGGCTAAGAATTCAAATGTGTCCTTAACAAAGATGAAAATTTCATTGTAAGGAAATTGGGAGAAACCAAATATAATTTTCAAAGACCAAAAACTAAAAACCAAATAATTATCAAACGGTACCTAAAATATAAAGTTTGTGTTTAAAAGGATCCTGAAGTTCAAAAATTTCCAAAAAGACTCATAACTTTCAATTTTGTGTCTAATAAGTCCCTTAAACTATAAATGTGTGTCTCATTGGTGGTTGAACTTTCAATTTTGTCTAATAAGTGTTCTTATTGTATTCAACAATTTAAAAAAAAATAAATAATAAATCTATTAGACATGTTGAATTTCCAATGATCATAAATTTTTAATTTCATGTCTAATAGGTTCGTGATTTTTTTTTAAAAAAAATGTCAAATAAGTTGAGGATCTATTAGATATAAAATTAAAATTTTAAGGACAACCTATTAGATTGGACACTTTTTTAAGTTTAGAGACTTATTATTAAATACAAAAGTTAAAAGCTCTAGAGGACCCTTGTTGGACACTTTAGAATCTATCGATTTATTAGACATAAACTTGAAAAATTCAGGGACTAGAATGGTAATTTAACCTAATTATTATTATTCCCTTTAATTGACATATATAATTTAAAAATAAATTAAATGTATTATTTAATTATTTTGTATATATATTTTGAGTTCGACCTTTTGTATTTCTAATTGAAAATATATTTTAATAATGAATCGAATCGAACTTAATTAGCTAAACTCCTTTTCCTAATTAAATTAGTTAATTAGAAAATATATTACAACAATTAATAAATTTAGAAGAGAAGGTTTTCCCATTAGGAGAAGGAAAAGCTCCAAAAGGCCTATAAATATAGAACCTTTAGATCACTCTAAATGATAAATCATCAATTAAAGAGCTCTTCTCTCAAAAGTCAAGAGAAGAATTAATAAAACTTTCTCAAATTTTCTTCTGTGATAATAATAATGTTTTCTTTGGAAGCTTTGGCAATGGCGGAGGTTGATTTTAATGAGTGGGCTCTGGACGCTGAAGAATGGGAAACAAACCAAATGGACAACAATGTGCCACCGCATTTAGTAGCCGATGAAGAAGAAGACAAGTTTCCGGCCGCCGGATTCTTCCGCAGATGGCGGCGGAAGATGGCGGAGCTGGTGGTGTTCGTTGCAATTCCGGTATTATGTGTCACTTCACTTTAG

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGACTGGGCTATGGATGCTGAAGAATGGGGAAGCAATATTGCAATGGAGAATGACGTTCCGCCGCATTTATTAGCCGATGAAGACGAAGTTGATTTTAATGAGTGGGCTCTGGACGCTGAAGAATGGGAAACAAACCAAATGGACAACAATGTGCCACCGCATTTAGTAGCCGATGAAGAAGAAGACAAGTTTCCGGCCGCCGGATTCTTCCGCAGATGGCGGCGGAAGATGGCGGAGCTGGTGGTGTTCGTTGCAATTCCGGTATTATGTGTCACTTCACTTTAG

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGACTGGGCTATGGATGCTGAAGAATGGGGAAGCAATATTGCAATGGAGAATGACGTTCCGCCGCATTTATTAGCCGATGAAGACGAAGTTGATTTTAATGAGTGGGCTCTGGACGCTGAAGAATGGGAAACAAACCAAATGGACAACAATGTGCCACCGCATTTAGTAGCCGATGAAGAAGAAGACAAGTTTCCGGCCGCCGGATTCTTCCGCAGATGGCGGCGGAAGATGGCGGAGCTGGTGGTGTTCGTTGCAATTCCGGTATTATGTGTCACTTCACTTTAG

Protein sequence

MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMENDVPPHLLADEDEVDFNEWALDAEEWETNQMDNNVPPHLVADEEEDKFPAAGFFRRWRRKMAELVVFVAIPVLCVTSL
Homology
BLAST of Spg029743 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 5.0e-11
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMENDVPPHLLADEDEVDFNEWALDAEEWET 60
          MSVSLEALAMAGI SN+WAMDAEEW  N  +ENDVPPHLLADED+ D N          T
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN-EIENDVPPHLLADEDDDDDN---------VT 60

Query: 61 NQMDNNVPPHLVADEEEDKFPAAGFFRRWRRK 93
          + + N              FP AGFF   RR+
Sbjct: 61 STVSNY------------SFPVAGFFDSLRRE 70

BLAST of Spg029743 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMENDVPPHLLADEDEVDFN 50
          MSVSLEALAMAGI SN+WAMDAEEW  N  +ENDVPPHLLADED+ D N
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN-EIENDVPPHLLADEDDDDDN 48

BLAST of Spg029743 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMENDVPPHLLADEDE 46
          MSVSLEALAMAGIDSN+WAMDAEEW  N  ME D+PPHLLADED+
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN-EMEKDIPPHLLADEDD 44

BLAST of Spg029743 vs. NCBI nr
Match: KAE8649147.1 (hypothetical protein Csa_014525, partial [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-09
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNI-AMEND--VPPHLLADEDE 46
          M VSLEALAMAGIDSN+WAMDAEEW +N   MEND  +PPHLLADEDE
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDE 48

BLAST of Spg029743 vs. NCBI nr
Match: KAG7015382.1 (hypothetical protein SDJN02_23017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMENDVPPHLLADEDEVDFNEWAL 54
          MSVSLEALAMAGIDSN+WAMDA+EW  +  M NDVPPHLL +ED  + +E A+
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAKEWERD-EMVNDVPPHLLVEEDNDNDDETAI 52

BLAST of Spg029743 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMENDVPPHLLADEDE 46
          MSVSLEALAMAGIDSN+WAMDAEEW  N  ME D+PPHLLADED+
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN-EMEKDIPPHLLADEDD 44

BLAST of Spg029743 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNI-AMEND--VPPHLLADEDE 46
          M VSLEALAMAGIDSN+WAMDAEEW +N   MEND  +PPHLLADEDE
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDE 48

BLAST of Spg029743 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-08
Identity = 46/91 (50.55%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMEND-VPPHLLADEDEVDFNEWALDAEEWE 60
          MSVSLEALAMAGIDSN+WAMDAEEW  N   E D VPPHLLADE++ +      D +E  
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN---EIDVVPPHLLADEEDDE------DGDEHV 60

Query: 61 TNQMDNNVPPHLVADEEEDKFPAAGFFRRWR 91
          T    +N             FP  G F  WR
Sbjct: 61 TTSTISNY-----------CFPVDGSFEGWR 71

BLAST of Spg029743 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMEND-VPPHLLADEDEVDFNEW 52
          MSVSLEALAMAGIDSN+W MDA+EW  N   E D VPPHLLADE++ +  E+
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERN---EIDVVPPHLLADEEDDEDGEY 49

BLAST of Spg029743 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNDWAMDAEEWGSNIAMEND-VPPHLLADEDEVDFNEW 52
          MSVSLEALAMAGIDSN+W MDA+EW  N   E D VPPHLLADE++ +  E+
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERN---EIDVVPPHLLADEEDDEDGEY 49

BLAST of Spg029743 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 0

Query: 5  LEALAMAGIDSNDWAMDAEEWGSNIAMENDVPPHLLADEDEVDFNEWALDAEEWETNQMD 64
          +EALAMAG+D  +W +  EEW      E+ VP HLLAD    DF E     EE E +  D
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWE---LQESVVPLHLLAD----DFKE-----EEQEEDHQD 50

Query: 65 NN 67
          N+
Sbjct: 61 ND 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6577295.15.0e-1153.26hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7015383.12.5e-1079.59hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022943015.14.2e-1082.22uncharacterized protein LOC111447880 [Cucurbita moschata][more]
KAE8649147.12.7e-0979.17hypothetical protein Csa_014525, partial [Cucumis sativus][more]
KAG7015382.11.4e-0867.92hypothetical protein SDJN02_23017, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FX982.0e-1082.22uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A0A0KU901.3e-0979.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
A0A0A0KWE73.3e-0850.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU04.7e-0767.31Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS684.7e-0767.31Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
AT2G22320.11.3e-0445.16unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029743.1Spg029743.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane