Spg029648 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029648
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein PIR
Location	scaffold2: 21651999 .. 21652690 (+)
RNA-Seq Expression	Spg029648
Synteny	Spg029648

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGAACCATTTCTTCTACCTCACTCCCCCAACTGAATTTTGGAGTAAAAACAAAGAAAACCAACAGAGAAAAGAGACAAAGAAGAAAGTGAGTTTACCGAAATAGAACGATTTCAACCGAGATTCTAAGCTACATATGATCTTAAGCGCGGCTGCTTTCTAGATCTCTCTCTGTTATACTGCTCAATGGCTGTCCCCGTCGAAGAAGCCATTGCTGCGTTGTCCACATTCTCCCTTGAGGTAATGCTTGATGACTATCAGAAACTAACATTTGCGCAGGAATTATCTTTTATGGTTATTTGACTTTCGATGCTTTACTAATAAACTTCATGAGATTTGTTTCTTTATAAACTGTGTAAATTCAGGAGGGTTTTAGCTTTAAAGTCTGTTTTGGTTAGAAATGAGAAATCTGTAATGGGATTTGTCTACTGTTAGAAATGAGAATTCTGTATTGGGATTTTTCTTCTGCAATTCGTATGCTTGTATTTCTTAGATTTCGACTTCAATTGATGTAGGATGGGCAGCCAGAGTTGCAAGGACCGGGCGTTTGGGTGTCAACTGAGAGAGGCGCAACTGAGAGTCCAATAGGTATGTATTTTGTGGAGTTGTGTATGGACATTGAACATCTAGATTTAGTACCCTTATGTTGGCGCTTTTATGGAATTTGTGGGGGGAAAGAAACAACCTTTTAG

mRNA sequence

ATGGCTGTCCCCGTCGAAGAAGCCATTGCTGCGTTGTCCACATTCTCCCTTGAGGATGGGCAGCCAGAGTTGCAAGGACCGGGCGTTTGGGTGTCAACTGAGAGAGGCGCAACTGAGAGTCCAATAGGTATGTATTTTGTGGAGTTGTGTATGGACATTGAACATCTAGATTTAGTACCCTTATGTTGGCGCTTTTATGGAATTTGTGGGGGGAAAGAAACAACCTTTTAG

Coding sequence (CDS)

ATGGCTGTCCCCGTCGAAGAAGCCATTGCTGCGTTGTCCACATTCTCCCTTGAGGATGGGCAGCCAGAGTTGCAAGGACCGGGCGTTTGGGTGTCAACTGAGAGAGGCGCAACTGAGAGTCCAATAGGTATGTATTTTGTGGAGTTGTGTATGGACATTGAACATCTAGATTTAGTACCCTTATGTTGGCGCTTTTATGGAATTTGTGGGGGGAAAGAAACAACCTTTTAG

Protein sequence

MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPIGMYFVELCMDIEHLDLVPLCWRFYGICGGKETTF

Homology

[Close]

BLAST of Spg029648 vs. NCBI nr
Match: KAG7023907.1 (Protein PIR [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPIGMYFVELCMDIEHLDLV 60
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPIGM+F+ELCMDIEHLDLV
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPIGMHFLELCMDIEHLDLV 59

[Close]

BLAST of Spg029648 vs. NCBI nr
Match: XP_022961250.1 (protein PIR isoform X1 [Cucurbita moschata] >XP_022961251.1 protein PIR isoform X1 [Cucurbita moschata] >XP_022961252.1 protein PIR isoform X1 [Cucurbita moschata])

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Spg029648 vs. NCBI nr
Match: XP_011659977.2 (protein PIR [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Spg029648 vs. NCBI nr
Match: XP_022988006.1 (protein PIR isoform X1 [Cucurbita maxima] >XP_022988007.1 protein PIR isoform X1 [Cucurbita maxima] >XP_022988008.1 protein PIR isoform X1 [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Spg029648 vs. NCBI nr
Match: XP_038878720.1 (protein PIR [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Spg029648 vs. ExPASy Swiss-Prot
Match: Q5S2C3 (Protein PIR OS=Arabidopsis thaliana OX=3702 GN=PIR PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-11
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPE+QGP V VS ER AT+SPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPI 42

[Close]

BLAST of Spg029648 vs. ExPASy TrEMBL
Match: A0A7N2M0E8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.0e-14
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPIGMYFVE 49
          MAVPVEEAIAALSTFSLED QPE+QGPG+WVSTERGATESPIGM  +E
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPGLWVSTERGATESPIGMNSLE 48

[Close]

BLAST of Spg029648 vs. ExPASy TrEMBL
Match: A0A6J1JL09 (protein PIR isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485378 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Spg029648 vs. ExPASy TrEMBL
Match: A0A6J1H9U6 (protein PIR isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461814 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Spg029648 vs. ExPASy TrEMBL
Match: A0A5D3CDP3 (Protein PIR OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002380 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Spg029648 vs. ExPASy TrEMBL
Match: A0A0A0LWG4 (DUF1394 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G587460 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPELQGPGVWVSTERGATESPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPI 42

[Close]

BLAST of Spg029648 vs. TAIR 10
Match: AT5G18410.1 (transcription activators )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPE+QGP V VS ER AT+SPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPI 42

[Close]

BLAST of Spg029648 vs. TAIR 10
Match: AT5G18410.2 (transcription activators )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPE+QGP V VS ER AT+SPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPI 42

[Close]

BLAST of Spg029648 vs. TAIR 10
Match: AT5G18410.3 (transcription activators )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  MAVPVEEAIAALSTFSLEDGQPELQGPGVWVSTERGATESPI 43
          MAVPVEEAIAALSTFSLED QPE+QGP V VS ER AT+SPI
Sbjct: 1  MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPI 42

The following BLAST results are available for this feature:

BLAST of Spg029648 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023907.1	1.1e-22	94.92	Protein PIR [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961250.1	8.2e-13	97.62	protein PIR isoform X1 [Cucurbita moschata] >XP_022961251.1 protein PIR isoform ...	[more]
XP_011659977.2	8.2e-13	97.62	protein PIR [Cucumis sativus]	[more]
XP_022988006.1	8.2e-13	97.62	protein PIR isoform X1 [Cucurbita maxima] >XP_022988007.1 protein PIR isoform X1...	[more]
XP_038878720.1	8.2e-13	97.62	protein PIR [Benincasa hispida]	[more]

BLAST of Spg029648 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5S2C3	1.6e-11	83.33	Protein PIR OS=Arabidopsis thaliana OX=3702 GN=PIR PE=1 SV=2	[more]

BLAST of Spg029648 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2M0E8	8.0e-14	87.50	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J1JL09	4.0e-13	97.62	protein PIR isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485378 PE=4 SV=1	[more]
A0A6J1H9U6	4.0e-13	97.62	protein PIR isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461814 PE=4 SV=1	[more]
A0A5D3CDP3	4.0e-13	97.62	Protein PIR OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002380 PE...	[more]
A0A0A0LWG4	4.0e-13	97.62	DUF1394 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G587460 PE=...	[more]

BLAST of Spg029648 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18410.1	1.1e-12	83.33	transcription activators	[more]
AT5G18410.2	1.1e-12	83.33	transcription activators	[more]
AT5G18410.3	1.1e-12	83.33	transcription activators	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029648.1	Spg029648.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0030833	regulation of actin filament polymerization
biological_process	GO:0006417	regulation of translation
cellular_component	GO:0031209	SCAR complex
molecular_function	GO:0000340	RNA 7-methylguanosine cap binding
molecular_function	GO:0031267	small GTPase binding