Spg029602 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029602
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold2: 23304211 .. 23313943 (-)
RNA-Seq Expression	Spg029602
Synteny	Spg029602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGATCAAAGTGAAGAGGATGTTGTTATAAAGAAACTCGAGAAGTTGAAAGTGACGACGGCTGAAAAAGCAAGTGTATATCAGCTGCAGGAAGAGGATATTGATAATTCAAATCAGAAATTGATGAACGCCCTGCTGTGTAAAGTATTTACTCAAAAGAAGATTTTTCCAGAGATGTTCATATAAAAAATGCCGAAAATATGGAGTCAAGAACAAACCATTATTGAACACGTGGGATTTAATCTATTTCTGTGAAAATTCAAGAATATCCACATCAAGAGGCGTATCAAGGAATCCGACCCGTGGTTTTTTGACAAAGCTCTAATCATGATGGAGGAACCTATAGGAAATATTTGCAGTGAGGATATGGAATTCAGGTATGTTTCGTTTTGGATTCATTTTCATAATATAAACGTAAAATGGGGAGAATGATTGTGTTCACTTTATTCAAAAAATTAGATATATATATACATCAGAATCTGTTATAATAACAGATATATGAGCAACAAAATAACAAAGATACATAAATAGAATATGTTATAATAAGAAACAGAATCAAAACTACAACTTAACTAATCCTTTAATACTCCCCCTTAAGGTGGGCTATAGATATTCAAAATGTCCAACTTGGATATTAGAGGAAGTAAATGGAAGCTGGAAGTGCTTTTGTGAAGATGTCTCCCAATTGAAGCCGCGAACGTAATGGGCAACAATTTAAGAAAACCATCTGTGAGCATATCGCGAACAAAATGGCAATCAAGTTCTATATGCTTTGTGCGCTCATGAAACATAGGATTATTTGCAATATGAACAACTATTTGATTGTCACAAAATAATACGATTGGCTTTTGAAACAGAACTTTTAAATCTGTAAGCAAATAAGATAGCCAAACTAATTCACAAGTTATCAACGCTAAAGTCTTGTACTCGGCTTCAGTGGAAGAACATGATATAACACTTTGTTTCTTGGATTTCCATGATACCAAAGATTCACCAAGAAATATACAGAAACCCGTCGTTGAACGTCAAGTATCAAGGCAGGAGGTCCAATCGGAATCGACAAAGCCACGCAATTGAAAAGATTTCGTTGGAGACAAAAGAATGCCTTGTCCGAGGGAAGACTTTAGATACCTTAGTAGATGATGTGCAGCTGCAAGATGTGATTTACATGGCTTTGCAACAAATTGACTAAGCTTATTTACCGCAAATGTAATATCAGACCGTGAGATGGTGAGATAAAGAAGTCTCCCAATGAGACGACGATAAACAGAAGGTTCATCCAAGAGATCTACTTCTGACTGCTGCAATTTTAGGAGAGGGTCCAAAGGAACAGATTTTGTTTTAGCACCTAAGAAACCAGTATCTTCTAATAACTGCAAGGTATAGTGTCTTTGGGACATATAAATCCTCTGTTGTGATCGAGCTATCTCAAGCCCAAGAAAATACTTAAGGTCTCCAAGATCCTTAAGTTTAAAACGATTATTCAAGAGCTTTAAGAGTTTCAATGTGAGATAGATTGGCTCCAGTGATGATAATATCATCAACATACACTAATAATGCAACAAAGTCAGAGTCAGCACCTTTAACAAATAGAGAATAATCAACTTTAGACTGTTTAAAGCCCAAAGAAAGTAACGTATCAGTGAATTTAGCAAACCACTGGCGGGAAGCTTGCTTCAAGCCATAGATTGATTTGTTTAAACGATAAACAATACGCTCCCCTTAGGTGCAAGTTGGTTGGATTCATATCCCAATGGTAGATCCATATAAACTTCTTCAAATAAATCTCCATGAAGAAATGCATTATTCACATCAAGCTGTACGAGAGGCCAATTATAAGAAACAACCATAGTGAGGAAAACTCTAATTGTAACAAGTTTGGCTATAGGTGAAAAAGTTTCAATAAAATCAAGACCCTCTCGTTGAGTATAGCCATTAGCAACTAATTGAGCCTTATACCTCTCAATTGACCCATCAGCTCGATGTTTGATTTTGTATATCCACTTACACCCAATACTATGTTTATTTGCTGGCAAAGGAACAAGTGTCCATGTCTTATTCACCTCCATTGCTTCAAGTTCAAGACGCATAGCTTCTCTCCAGTGTTCAAAAGGAAAGGCTTGATGGTAAAATTGTGGTTCATATTGGGAGGAAATTTGTAGAGAAAAGGTTTTAAAAAATGGAGAAAGGCGAGAGTAAGATAAATGGTTATGTAAAGGATATCGGGTGGAAAATGTAGGTGGATCTATCTGGTTTATAAGACTGCAATGATAGTCTTGTAGGTAAGTTGGTGGTTTACTAGATCGAGATGATTTTCGTAGTTGGTTAGGCAAAGGTTGTTGTGAGGGTGCAAAAATTTGTGGTGACAGTTTGTGGTTGGTTATTTTGGTCTGGTAAAGGATTAGTAGTAGAAGTAGGTATTGATGAAGAGGTTGGTAAATGAAGTTCTGTTTGTGTTGGAGCATATGGTAAAGGTGAAGATTTTGATGGTGTTGATATGGATTCTGAAGGAGTAGGGAGGTCAATATTGAAAGGTTTAGGTAAAACAAGGTCAGAGGGAAAATCAGGTTGCCCAATTGAATCAGTCATTGTGTGAAAAGGGAAGATGGATTCATGAAATATAACATCCCTTGAAATTATAATACGTCTGGTTTCTATATCGAGAGCCTGTAAGCCTTCATTCCAAGAGGATATCCAAGGAAGACAGTTGTTGAAGCTCAAGGAGAAAACTTATTCTACTGTGATGGCAATGTAGAAACGTAACATAGGCAACCGAACACTTTTAGCAATGAATAATCAGCAGAAAAACCATTAAGTAATTCAAAAGGGGTGGACCACTGTAAACTGGGAGAAGGTGTCCTATTAATAAGGTGTACAGAAGTTAAGACACATTCATTCCAAAAATGTAGCGGTACCCGAGACTGAAAATATAGAGCTCTTGCCACATTCAGTATATGTTGGTGTTTTCTTTCCACCACTGAATTTTGTTCAGGTCTCCCAACACAGGAAAATTGATGTAAAACACCTTTTGATCTAAATAAATCATCAAAACACAACTCTGGAGTGTTATCGGATCGAAATGCCTTTACTGGTTTTGTTATACTGTGTTTCCACCAATTTGAAAAACTCAGGTATGATAGTCAAAACATCAGACTTCTTCTTTAACAGAAAAAACCCAAGTGTATCTACTATGGTCATCTACTAAAGTAAGAAAATACTTATGACCAACATGTGAAGCAGTACTAAAAGGTCCCCAAACATCAACATGAATAAGATCAAAAACACAGTCCACACGATGATTATTAGAATTGAAAGAAAAACGTTTCTGCTATGCTAGCGGGCAAACAGTACAAGGCAACTGAGAACGTAAACAAGAATAATCATGAGATAAACTGTTCTTCAAAGCATGTAATCTAGAAACAGAAGGATGACCCAATCTTGAATGCCAGAGAGCAAACAAATCACTTTGGATAGGGACAACATGAGCATAAATTGTACTTGGTGTTATGGCAGCAACATCAAGTGGTTTTTTCCAGAATATACAACTTATCGTGTAGTTTACCCCTGCCAATCGTCTTCAAAGTGCACTTTTCCTGAATAATACAAGATCAGCCAAAAATTCAATAGAAATATCATCTTCGGTGGTTAAAGCACTGATTGACAGCAAATTATATTAGAATTTGGGCACAAACAAGACTCTCTTAAGAACTAACGAACCAGATAATGTCACCAGCATACTGAACATGAATTCTTGTGTTGTCAGGCAAAACCACAGTAGTGTCAATTGGTTCCAAGTAATCAAAAGCATCTTTCATAAAGCAAATGTGTGTGGACGCACCAGAGTCTATTATCCAATCAGAGAGCATGGATGTATTTGAATATTGATGAATGTTAAAGCATGTACCTACCATATAAGTGTTGGTATCGTCTGATTCATTCTTGACAGCCGCAAGCTTTGATTGAAGCAAATTCAGAATATCATGGCATTGTTTGAATGGACCAGAAGAAGTACATTCAGCTTGAGTCATAGTAGCATTTGCATTCAAGACTCCTTTTGCATTCTGATTATTTGGTTATGCCTCATTTGAATTGTTTTAATTATAACTCTGATTATTTGACTGACCTCCATTGGAGTTACGTTGTATCCCCTTTTGACGATATCCAGGTGGATATCTGTGTAGTTTATAACACTTGTCAACTGTGTACCCTTGAATTCCACAATGTGTGCAGATTGGACGGCCTCGCTGTTTGTAATTCTGACTCTGATTTTGATTATTCGCCGGCGCTGGATTTGCATTATTAGAATTTCCTACTGCTAGAGTAACAGTAGTAGGAGGCTTTTGGTTAGATCTCTGTTCTTCCTCTTGTACAATCAAAGAGAAAGCCTTATTGATGGGTGGTGGAGGATCCATAAGAAGAATTTGTGAGCGAGAATGGCCATAACCATCACTAAGTCCCATGAGAAAACTCATAAGATATTCTATCTGAATTTTTTTTTCAAGTTTCTGGACTCCACCACAAGTGCAAGATCCACATGAACAACCAGGCTTATATGTGATGTATTCATCCCAAACACTCTTTATTTTTGCAAAGTACATGGTTACATTTTCTTGATCTTGCTTAATCGGTGCCAACTCTTTTTTCAGATGAAAAATTCTAGGGCCACTTCGTTTTTGAAATCGATCCTTTAAATCTAACCAAATAGCTTGTGCAGAATCAGAGAAAAAATCATTGGACGAGATTGCCTTTGAAACAGAATTAAGGATCCAGGCAATCACGATATTATTATTTCGAGTCCAAAGTTTGAGAAGCTCACCAGAAGCAGGTTTCGGTATCGATCCATCTATGAAACCAAGTTTGTTCTTGATCGAAAGCGCCAATAGCATTGAACGACTCCATTTGATGTAATTATCATCTGTCAGTAACTCTGTAACGAGAACAATATTTGAACTATCGCTATGATGCAAAAAATATGGATTATCTGAGGATTGATCCTCGGAGGATGAATCAACCACGCACTTCTCTGTACTCATGATTGTGAATCAGAGAGAAAAAAAACAAAGCGAAAAGAAGGGCCCTCACTTATTGCTCTGATACCATATAAACGTAAAATGGGGAGAATGATTGTGTTCACTTTATTCAAAAAAATCCAGATATATATATATACATCAGAATCTGTTATAATAACAGATATATGAGCAACAAAAATAACAAAGATACATAAATAGAATCTGTTATAATAAGAAACTGAATCAAAACTACTGTTGAAGGAGAAATTTTGACCAATCACAAATTGTCACGTCATTCCATGAATTAATGATGAAATTTTGATTAATTAAATTTGGGACCAATTATAAATTGACAGGTGTCCCAAATTTAATTTGAAGACAAAGTCGACCAATTATAAATTTATAGAGCCAAATTTTTTATTTGATCAATTAATTAAAATTAAATTATTTTGATCAAATTAATTAATTTGACCAAATAATTAAAAAATTATTTGGATCAAATTTGGGTCTTTTAAATATTTGGGTCATATGGTTTTGGGTCAAAGATGAACCAAACTTAAGACTAAATAGTTGAGCCCAAGACCAGTAAAGCCCAAGCCTAAGTTGTTGGCCCAACTGGCCCAAAAGTCACCAGGACCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCTTCCATTTGAGGGGGTCAGAATTTTGAAGCTCCAAGCCAGAGTCAGAGAATTCAGAGAAACTTCATCAAGATTGAAGACTGAAGACTGAAGACTGAACACTCCTTGAAATCCATAAGTTTCAAAGTGCTGAACACTTCTTGAAGATTGAAGACTCCTTCAAGATTAGAAGACTTCAAGCTTCAAGAATCCATTGAAGCTTCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATCCACACACAAGAGAGAGAATCAGAGGATTAACATTAGAGATTGTACATCCACACGCATACAAATATTAATACAAATATATTGTTTATTCCACGTGTCTCCATCTTCGAAGTCACGTGTGAACAAATTGGCACGCCTGGTGGGACATCTCTACCTCTCATCTCTTTCTCTTGTTAAAAGATCCAACCAACGTGATGGCATCAAAGAAAGCTCCCGCGAAGGTTACAACATCAAGCGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAAGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTTGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAACCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAGTCAGACCCCTACTGCAGGAAAGAACGATAAGACCCCTACTGCAGGAAAAAGTGATAAGGGGAAGGCTGTCGTGCATGAGGACCAACCGCAACACTCTGCGTCAGTTGCCTCTTTGTCTGTCCAACAGCTACAAGACATGATCATGAATTCCATCAGGGCTCAATATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCTAAACCTTATACAAAGAGGATTGACAATCTGAGACTTCCCTCTGGGTATCAGCCTCCCAAGTTCCAACAGTTTGACGGAAAGGGCAACCCAAAGCAGCACATCGCCCACTTTGTTGAGACCTGTGAGAACGCTGGTACTCGGGGAGATTTTCTTGTTAAGCAATTTGTCCGAACACTGAAAGGAAACGCGTTTGATTGGTACACTGACCTGGAGCCTGAGACAATTGACAGTTGGGAACAGATTGAGAGAGAGTTTCTGAATCGCTTCTACAGTACGAGGCGAACAGTTAGTATGACGGAACTCACGAGCACAAAGCAACGGAAGGGTGAGCCAGTCATCGACTACATCAATCGTTGGAGAGCCTTGAGTCTCGACTGCAAAGATAGACTCTCCGAGGTATCCTCTGTTGAAATGTGCACCCAAGGCATGCACTGGGGACTTCTTTACATCTTGCAGGGGATAAAACCCCGGACCTTTGAAGAATTGGTGACTCGCGCTCATGATATGGAGTTGAGCATCGCTAGTAGGGGGAACAAAGATCCCATAGTCCCAGACATGAGGAAAGAAAAGAAGGAAGTCAAAGGCACTGAGAAAGTTACGAAGAGTGCCACAAAAGAATCCATGGTCGTCAACACGACCTCGTTGAAATTTTCCTCCAAAGGAAGAGAAAGTAAATCCGATAAGCGAATGGAGACAGGCGAGAGACGTCGCCTAACTTTAAAAGAAAGACAAGAAAAAGTGTATCCGTTTCCAGATTCCGACGTCCCAGATATGTTGGAACAATTGTTGGAGAAGCAGTTAATTGAACTCCCCGAATGCAAACGACCGGAAGAGTTAGGGAAAGTCATTGATCCTAACTACTGCAAGTATCACCGAGTCGTTAGCCATCCAGTGGAGAAATGTTTTGTTTTAAAAGAGCTAATCCTTAAGTTGGCTCGTGAAAAGAAAATTGAGCTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCAACAATAATGGCGAATGTGGGGGATCAAATTCCTTTAATTTCCTCATGTGATTATGAAGAGAGGCTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAACTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCACTTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGGAAAAAAGAAATCAAGGAGGTCAAAGCATGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGTGCTTTCTTGATGATGGTCAAGGAGAAGCACTTGAAATCGTCACTTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGAGTACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAATCCGATGGTACAAACATCCCAACCTTTGAGGCACGCACATGTGCTTCGTGTTGCATGACTATAGGATTTTCCGATGAAGATTTGCTGCTAGGGTCAAAGCCTCACAATAGACCTTTATTCGTCTCGGGATACATTCGAGAACAGAGGGTAGGTCGGATCCTCATCGACGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTCGATGGAAGAATTATCAAACAGTAAATTGGTGATTCAAGGTTTCAATCAAGGCGGACAACGAGCGATTGGCATGATACGTCTCGAGCTCATCATTGGGGATTTGAAGGCCGATACTTTGTTTCATGTGATAGATTCCAAGACCACTTATAAGCTGCTATTAGGTCGTCCTTGGATCCATGGCAATGGAGTGATAACCTCTACATTGCACCAGTGCTTCAAGTTCTATCAAAATGGAATTAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGCTGAATCCCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACAGGGGAAACTATACCTACAGAAATCCCCTTGATAAAAAGAATGATAAACTCGACTTAGAGCCACAAGCAGATGCAAGGAAGGAAGTTGTTGAGGATGTGAAGGCATGTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAATGTTCACCTGTCCTACGATACGTCCCTTTATCTCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCGAAAAGCATAAAGGTCGGTGACGTTGAAATTCTGAAGGAAAGTTTCACTATGCCTCTTACAAAGATCACAAAGCAGGAGGTTAAGAAACCTGAGGATGACCAGAAAAAAACGATTTTGCCTGACAAACGGACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGACAGATCTGAGCTCTCTGCAACGCAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAATCGCCCGAACCGGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCATACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCTGTCTTTCAGAGGATAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACTTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTTGTTGGTGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGAA

mRNA sequence

ATGGGCGATCAAAGTGAAGAGGATGTTGTTATAAAGAAACTCGAGAAGTTGAAAGTGACGACGGCTGAAAAAGCAAGTGTATATCAGCTGCAGGAAGAGGATATTGATAATTCAAATCAGAAATTGATGAACGCCCTGCTGTGTAAAAATATCCACATCAAGAGGCGTATCAAGGAATCCGACCCGTGGTTTTTTGACAAAGCTCTAATCATGATGGAGGAACCTATAGGAAATATTTGCAGTGAGGATATGGAATTCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAAGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTTGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAACCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAAGAGGCTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAACTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCACTTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGGAAAAAAGAAATCAAGGAGGTCAAAGCATGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGTGCTTTCTTGATGATGGTCAAGGAGAAGCACTTGAAATCGTCACTTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGAGTACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAAGCCACAAGCAGATGCAAGGAAGGAAGTTGTTGAGGATGTGAAGGCATGTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAATGTTCACCTGTCCTACGATACGTCCCTTTATCTCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCGAAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAATCGCCCGAACCGGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCATACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCTGTCTTTCAGAGGATAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACTTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTTGTTGGTGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGAA

Coding sequence (CDS)

ATGGGCGATCAAAGTGAAGAGGATGTTGTTATAAAGAAACTCGAGAAGTTGAAAGTGACGACGGCTGAAAAAGCAAGTGTATATCAGCTGCAGGAAGAGGATATTGATAATTCAAATCAGAAATTGATGAACGCCCTGCTGTGTAAAAATATCCACATCAAGAGGCGTATCAAGGAATCCGACCCGTGGTTTTTTGACAAAGCTCTAATCATGATGGAGGAACCTATAGGAAATATTTGCAGTGAGGATATGGAATTCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAAGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTTGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAACCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAAGAGGCTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAACTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCACTTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGGAAAAAAGAAATCAAGGAGGTCAAAGCATGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGTGCTTTCTTGATGATGGTCAAGGAGAAGCACTTGAAATCGTCACTTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGAGTACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAAGCCACAAGCAGATGCAAGGAAGGAAGTTGTTGAGGATGTGAAGGCATGTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAATGTTCACCTGTCCTACGATACGTCCCTTTATCTCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCGAAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAATCGCCCGAACCGGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCATACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCTGTCTTTCAGAGGATAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACTTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTTGTTGGTGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGAA

Protein sequence

MGDQSEEDVVIKKLEKLKVTTAEKASVYQLQEEDIDNSNQKLMNALLCKNIHIKRRIKESDPWFFDKALIMMEEPIGNICSEDMEFREDHTPLAVASRISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESKRLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESHLFRDSKRKVKSQRKKGKKKSRRSKHVVEESEDFFCPPQPITLAEYFPRCFLDDGQGEALEIVTCHIVDVVEDDDVPASSSSTVAGPGDLSSFSIKDLLSLPQEAKKPQADARKEVVEDVKACDLKKGETSTSLVKPKVVEDEKCSPVLRYVPLSRRKKGESPFTECPKSIKKKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVAYINHITVEEVDDSKEEESVDQRASVFRRIRPPVARASVFQRIIVNETEEESAQLTNSSTRSLVFRRLSMLVGEEESTLSTPDVTRPSAFRRLNMPVGEEE

Homology

[Close]

BLAST of Spg029602 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 5.9e-44
Identity = 171/591 (28.93%), Postives = 228/591 (38.58%), Query Frame = 0


Query: 182 RETAESKRLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAR 241
           RE      L +FGT +PVVVRF +E   + SQEK   IE+++E WT+V RRKK+K +  +
Sbjct: 333 REKKIELDLEEFGTFEPVVVRFHQEVAPEDSQEKERLIEEDDERWTIVTRRKKRKSTPIQ 392

Query: 242 KESHLFRDSKRKVKSQRKKGKKKSRRSKHVVEESEDFFCPPQPITLAEYFPRCFLDDGQG 301
           KE   +R+ +R  K+Q+ K KKK+R+ K + +E +DF    + ITLA++FP  FL D Q 
Sbjct: 393 KEHRFYRNYRRWNKAQKNKKKKKTRKLKLMHKEDKDFPRTQRLITLADFFPTRFLGDHQD 452

Query: 302 EALEIVTCHIVDVVEDDDVPASSSSTVAGPGDLSSFSIKDLLSLPQE------------- 361
           E   +V CH ++  E++ +P  S        DLS F++ DLLSLPQE             
Sbjct: 453 ENPGVVACHAINATEEESIPLRSLEEEKVSKDLSRFNVDDLLSLPQEIKTILINALLNSA 512

Query: 362 ------------------------------------------------------------ 421
                                                                       
Sbjct: 513 ASSSSASTVTYESTPYCMSIDFSNDDLLLGSKLHNRPLYVSGYVREQRVDRILVDNGSAV 572

Query: 422 --------------------------------------AKKPQAD--------------- 481
                                                  KK +AD               
Sbjct: 573 NIMPKSTIRQLGILMKELSNSKLVIQGFNQGSQRVIDGVKKVEADSNPFSEAESHFADAK 632

Query: 482 ------------------------------ARKEVVEDVKACDLKKGETSTSLVKPKVVE 538
                                         A KE    +     +K E STS  K  ++ 
Sbjct: 633 FYLKNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHISIGTFHSEKSEASTSTAKSVILM 692

[Close]

BLAST of Spg029602 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-41
Identity = 180/683 (26.35%), Postives = 254/683 (37.19%), Query Frame = 0


Query: 155  ERKLNLLMKAVDERD-LEIAYLKNQLQNRETAES-KRLIQFGTLDPVVVRFRKEATMKGS 214
            E+++ L ++ V + +  E+  +     +R   E  K L+QFGT +P+VV+F +E + +  
Sbjct: 503  EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 215  QEKYNSIEDENEGWTLVVRRKKQKQSYARKESHLFRDSKRKVKSQRKKGKKKSRRSKHVV 274
            Q +   IE+++EGW +V  RKK++    ++ES  +++ +R  K+Q+ K KKK+ + K V 
Sbjct: 563  QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

Query: 275  EESEDFFCPPQPITLAEYFPRCFLDDGQGEALEIVTCHIVDVVEDDDVPASSSSTVAGPG 334
             E  +F  P + +TLA++ P+ FL D Q E  E+V CH ++  E++ +P  S        
Sbjct: 623  NEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSK 682

Query: 335  DLSSFSIKDLLSLPQE-------------------------------------------- 394
            DLS F+++DLLSLPQE                                            
Sbjct: 683  DLSRFNVEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLGS 742

Query: 395  ------------------------------------------------------------ 454
                                                                        
Sbjct: 743  KLHNRPLYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQG 802

Query: 455  ------------------------------------------------------------ 514
                                                                        
Sbjct: 803  SQRAIGMIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD 862

Query: 515  -AKKPQAD---------------------------------------------ARKEVVE 547
              KK +AD                                             A  E  E
Sbjct: 863  GVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPHE 922

[Close]

BLAST of Spg029602 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-14
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 94  AVASRISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMAE 153
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 154 MERKLNLLMKAVDERDLEIAYLKNQLQNRETAESKR 190
           MERK+NLLMK VDERD EIA LK Q+Q RETAES +
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

HSP 2 Score: 180.6 bits (457), Expect = 3.6e-41
Identity = 179/683 (26.21%), Postives = 254/683 (37.19%), Query Frame = 0


Query: 155  ERKLNLLMKAVDERD-LEIAYLKNQLQNRETAES-KRLIQFGTLDPVVVRFRKEATMKGS 214
            E+++ L ++ V + +  E+  +     +R   E  K L+QFGT +P+VV+F +E + +  
Sbjct: 503  EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 215  QEKYNSIEDENEGWTLVVRRKKQKQSYARKESHLFRDSKRKVKSQRKKGKKKSRRSKHVV 274
            Q +   IE+++EGW +V  RKK++    ++ES  +++ +R  K+Q+ K KKK+ + K V 
Sbjct: 563  QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

Query: 275  EESEDFFCPPQPITLAEYFPRCFLDDGQGEALEIVTCHIVDVVEDDDVPASSSSTVAGPG 334
             E  +F  P + +TLA++ P+ FL D Q E  E+V CH ++  E++ +P  S        
Sbjct: 623  NEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSK 682

Query: 335  DLSSFSIKDLLSLPQE-------------------------------------------- 394
            DLS F+++DLLSLPQE                                            
Sbjct: 683  DLSRFNVEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLGS 742

Query: 395  ------------------------------------------------------------ 454
                                                                        
Sbjct: 743  KLHNRPLYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQG 802

Query: 455  ------------------------------------------------------------ 514
                                                                        
Sbjct: 803  SQRAIGMIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD 862

Query: 515  -AKKPQAD---------------------------------------------ARKEVVE 547
              KK +AD                                             A  E  E
Sbjct: 863  GVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPHE 922

[Close]

BLAST of Spg029602 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-14
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 94  AVASRISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMAE 153
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 154 MERKLNLLMKAVDERDLEIAYLKNQLQNRETAESKR 190
           MERK+NLLMK VDERD EIA LK Q+Q RETAES +
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

HSP 2 Score: 180.6 bits (457), Expect = 3.6e-41
Identity = 179/683 (26.21%), Postives = 254/683 (37.19%), Query Frame = 0


Query: 155  ERKLNLLMKAVDERD-LEIAYLKNQLQNRETAES-KRLIQFGTLDPVVVRFRKEATMKGS 214
            E+++ L ++ V + +  E+  +     +R   E  K L+QFGT +P+VV+F +E + +  
Sbjct: 503  EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 215  QEKYNSIEDENEGWTLVVRRKKQKQSYARKESHLFRDSKRKVKSQRKKGKKKSRRSKHVV 274
            Q +   IE+++EGW +V  RKK++    ++ES  +++ +R  K+Q+ K KKK+ + K V 
Sbjct: 563  QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

Query: 275  EESEDFFCPPQPITLAEYFPRCFLDDGQGEALEIVTCHIVDVVEDDDVPASSSSTVAGPG 334
             E  +F  P + +TLA++ P+ FL D Q E  E+V CH ++  E++ +P  S        
Sbjct: 623  NEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSK 682

Query: 335  DLSSFSIKDLLSLPQE-------------------------------------------- 394
            DLS F+++DLLSLPQE                                            
Sbjct: 683  DLSRFNVEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLGS 742

Query: 395  ------------------------------------------------------------ 454
                                                                        
Sbjct: 743  KLHNRPLYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQG 802

Query: 455  ------------------------------------------------------------ 514
                                                                        
Sbjct: 803  SQRAIGMIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD 862

Query: 515  -AKKPQAD---------------------------------------------ARKEVVE 547
              KK +AD                                             A  E  E
Sbjct: 863  GVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPHE 922

[Close]

BLAST of Spg029602 vs. NCBI nr
Match: XP_031740568.1 (uncharacterized protein LOC116403508 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-14
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 94  AVASRISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMAE 153
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 154 MERKLNLLMKAVDERDLEIAYLKNQLQNRETAESKR 190
           MERK+NLLMK VDERD EIA LK Q+Q RETAES +
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

HSP 2 Score: 180.3 bits (456), Expect = 4.7e-41
Identity = 179/683 (26.21%), Postives = 254/683 (37.19%), Query Frame = 0


Query: 155  ERKLNLLMKAVDERD-LEIAYLKNQLQNRETAES-KRLIQFGTLDPVVVRFRKEATMKGS 214
            E+++ L ++ V + +  E+  +     +R   E  K L+QFGT +P+VV+F +E + +  
Sbjct: 503  EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 215  QEKYNSIEDENEGWTLVVRRKKQKQSYARKESHLFRDSKRKVKSQRKKGKKKSRRSKHVV 274
            Q +   IE+++EGW +V  RKK++    ++ES  +++ +R  K+Q+ K KKK+ + K V 
Sbjct: 563  QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

Query: 275  EESEDFFCPPQPITLAEYFPRCFLDDGQGEALEIVTCHIVDVVEDDDVPASSSSTVAGPG 334
             E  +F  P + +TLA++ P+ FL D Q E  E+V CH ++  E++ +P  S        
Sbjct: 623  NEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSK 682

Query: 335  DLSSFSIKDLLSLPQE-------------------------------------------- 394
            DLS F+++DLLSLPQE                                            
Sbjct: 683  DLSRFNVEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLGS 742

Query: 395  ------------------------------------------------------------ 454
                                                                        
Sbjct: 743  KLHNRPLYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQG 802

Query: 455  ------------------------------------------------------------ 514
                                                                        
Sbjct: 803  SQRAIGMIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQD 862

Query: 515  -AKKPQAD---------------------------------------------ARKEVVE 547
              KK +AD                                             A  E  E
Sbjct: 863  GVKKVEADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPHE 922

[Close]

BLAST of Spg029602 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.9e-44
Identity = 171/591 (28.93%), Postives = 228/591 (38.58%), Query Frame = 0


Query: 182 RETAESKRLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAR 241
           RE      L +FGT +PVVVRF +E   + SQEK   IE+++E WT+V RRKK+K +  +
Sbjct: 333 REKKIELDLEEFGTFEPVVVRFHQEVAPEDSQEKERLIEEDDERWTIVTRRKKRKSTPIQ 392

Query: 242 KESHLFRDSKRKVKSQRKKGKKKSRRSKHVVEESEDFFCPPQPITLAEYFPRCFLDDGQG 301
           KE   +R+ +R  K+Q+ K KKK+R+ K + +E +DF    + ITLA++FP  FL D Q 
Sbjct: 393 KEHRFYRNYRRWNKAQKNKKKKKTRKLKLMHKEDKDFPRTQRLITLADFFPTRFLGDHQD 452

Query: 302 EALEIVTCHIVDVVEDDDVPASSSSTVAGPGDLSSFSIKDLLSLPQE------------- 361
           E   +V CH ++  E++ +P  S        DLS F++ DLLSLPQE             
Sbjct: 453 ENPGVVACHAINATEEESIPLRSLEEEKVSKDLSRFNVDDLLSLPQEIKTILINALLNSA 512

Query: 362 ------------------------------------------------------------ 421
                                                                       
Sbjct: 513 ASSSSASTVTYESTPYCMSIDFSNDDLLLGSKLHNRPLYVSGYVREQRVDRILVDNGSAV 572

Query: 422 --------------------------------------AKKPQAD--------------- 481
                                                  KK +AD               
Sbjct: 573 NIMPKSTIRQLGILMKELSNSKLVIQGFNQGSQRVIDGVKKVEADSNPFSEAESHFADAK 632

Query: 482 ------------------------------ARKEVVEDVKACDLKKGETSTSLVKPKVVE 538
                                         A KE    +     +K E STS  K  ++ 
Sbjct: 633 FYLKNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHISIGTFHSEKSEASTSTAKSVILM 692

[Close]

BLAST of Spg029602 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-38
Identity = 174/662 (26.28%), Postives = 251/662 (37.92%), Query Frame = 0


Query: 155 ERKLNLLMKAVDERDLEIAYLKNQ-LQNRETAESKR-LIQFGTLDPVVVRFRKEATMKGS 214
           E+K+ L ++ V + +   A + ++ L  R   E +  L+QFGT +PVVVRF +E   + S
Sbjct: 57  EKKIELDLEEVAQTNHAAAMIMSEALSPRLIFEQRESLLQFGTFEPVVVRFHQEVAPEDS 116

Query: 215 QEKYNSIEDENEGWTLVVRRKKQKQSYARKESHLFRDSKRKVKSQRKKGKKKSRRSKHVV 274
           QEK   IE+++EGWT+V RRKK+K +  +KE   +R+ ++  K+Q+ K KKK+R+ K + 
Sbjct: 117 QEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLMH 176

Query: 275 EESEDFFCPPQPITLAEYFPRCFLDDGQGEALEIVTCHIVDVVEDDDVPASSSSTVAGPG 334
           EE +DF    + +TLA++FP  FL D Q E   +V CH ++ +E++++P  S        
Sbjct: 177 EEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVSK 236

Query: 335 DLSSFSIKDLLSLPQEAK------------------------------------------ 394
           DLS F++ DLLSLPQE K                                          
Sbjct: 237 DLSRFNVNDLLSLPQETKIILINALLNSTASSSSAPTATYESTPYCMSIDFSYEDLLLGS 296

Query: 395 -------------------------------KPQADAR---------------------- 454
                                           P++  R                      
Sbjct: 297 KLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTMRQLGILMEELSNSKLIIQGFNQG 356

Query: 455 ----------KEVVEDVKACDL-------------------------------------- 514
                     + ++ D+K   L                                      
Sbjct: 357 SQRVIGMICLELIIGDLKTSALFHVIDSRITYKLLLGRSWIHGNGVVTSTLHQCFKFYQD 416

Query: 515 --KKGETSTSL----------VKPKVVEDEKCSPVLRYVPL------------------- 547
             KK E  ++            K  +  D     V   VPL                   
Sbjct: 417 GVKKVEADSNPFSEVESHFADAKFYLKNDSSSEAVSVEVPLLNREDNLQLKSLTSKEPQK 476

[Close]

BLAST of Spg029602 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-37
Identity = 152/488 (31.15%), Postives = 211/488 (43.24%), Query Frame = 0


Query: 205 KEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESHLFRDSKRKVKSQRKKGKKK 264
           +E T + SQEK   IE+++EGWT+V RRKK+K +  +KES L+ + +R  K+Q+ K KKK
Sbjct: 460 EEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKK 519

Query: 265 SRRSKHVVEESEDFFCPPQPITLAEYFPRCFLDDGQGEALEIVT---------------- 324
           +R+ K V E+ +DF    + +TLA++FP  FL D Q E   +V                 
Sbjct: 520 TRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTP 579

Query: 325 -CHIVDVVEDDDVPASS--------------------------------SSTVAGPGDL- 384
            C  +D  ++D +  S                                  ST+   G L 
Sbjct: 580 YCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILM 639

Query: 385 ----------------------SSFSIKD-------LLSLPQEAKKPQAD----ARKEVV 444
                                 + F +K+        + +P   K+        A +E  
Sbjct: 640 EELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESH 699

Query: 445 EDVKACDLKKGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKSIK--- 504
           +        K E STS  K  +V DEK S  P+LRYVPLSRRKKGESPF E P+ +K   
Sbjct: 700 KSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGD 759

Query: 505 ------------------------------------------------------------ 531
                                                                       
Sbjct: 760 IEVLKESFTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFK 819

[Close]

BLAST of Spg029602 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.0e-14
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 95  VASRISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMAEM 154
           VA  I K + ES K  + +K+NPL+++   +S + K   +PDVMSVMMAD+  +  MAEM
Sbjct: 39  VAQSILKQLMESLKAGIVIKENPLYDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEM 98

Query: 155 ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESKR 190
           ERK+N LMKAV+ERD EI  L+ Q++ RETAES +
Sbjct: 99  ERKINFLMKAVEERDHEIIALREQMRTRETAESSQ 133

HSP 2 Score: 165.2 bits (417), Expect = 7.5e-37
Identity = 142/465 (30.54%), Postives = 213/465 (45.81%), Query Frame = 0


Query: 150 RMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESKR--LIQFGTLDPVVVRFRKEA 209
           +  E   K+ L ++ V + +  +  + ++  +      +R  L+QFG  +PVVV+F +E 
Sbjct: 155 KQPEQAGKIELDLEEVAQTNYAVVTIMSEALSPRLIFKQRESLVQFGNFEPVVVQFHQEL 214

Query: 210 TMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESHLFRDSKRKVKSQRKKGKKKSRR 269
             + S+EK  SIE+++EGW +V RRKK+K +   K+S L        K+Q+ K KK +R+
Sbjct: 215 APEDSREKERSIEEDDEGWIVVTRRKKKKVNSDPKKS-LASTKIGGNKAQKNKKKKMTRK 274

Query: 270 SKHVVEESEDFFCPPQPITLAEYFPRCFLDDGQGEALEIVTCHIVDVVEDDDVPASSSST 329
            K V EE++DF  P + +TL ++FP  F  D Q E   +V CH ++  E++ +P  S   
Sbjct: 275 LKLVHEENKDFPRPQRLVTLVDFFPTRFFCDHQDENPGVVACHAINATEEESIPLRSLEE 334

Query: 330 VAGPGDLSSFSIKDLLSL-------PQE-------------------------------- 389
                DLS F++ DLLSL       P +                                
Sbjct: 335 EGVSKDLSRFNVDDLLSLISRNQSHPYQCIVEFSSIKFECSATYGSTLYCMSIDFSDEDL 394

Query: 390 -----------AKKPQADA-----------------RKEVVEDVKACDLKKGETSTSLVK 449
                       KK +AD+                 + +   +V   ++  GE STS  K
Sbjct: 395 LLRSKLYNRPFVKKVEADSNPFSKAESHFADVKFYLKNDNSPEVVPIEIYLGEASTSTTK 454

Query: 450 PKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKSIK---------------------- 495
             ++ DEK S  P+L Y+PLSR KKGESPF + P+ +K                      
Sbjct: 455 SMILIDEKTSNPPILHYIPLSRHKKGESPFVKSPQGLKVGDIEVIKESFTTLLTKITKQE 514

[Close]

BLAST of Spg029602 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-35
Identity = 100/236 (42.37%), Postives = 131/236 (55.51%), Query Frame = 0


Query: 356 ARKEVVEDVKACDLKKGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPK 415
           A KE  + +      K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 416 SIK-------------------------------------------KKLLKEGYSLPTTR 475
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 476 KGLGYKSPEPVRITRKGKAKVAYINHITVEEVDDSKEEESVDQRASVFRRIRPPVARASV 535
           KGLGYKSPEP+RITRKGK KV   NHITV+EVD  +E+E  +QR S F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 536 FQRIIVNETEEESAQLTNSSTRSLVFRRLSMLVGEEESTLSTPDVTRPSAFRRLNM 547
           F+R+ + E + +  Q T++  R   F+RL++   EE+    T   T+PSAF RL++
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSI 423

The following BLAST results are available for this feature:

BLAST of Spg029602 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05005.1	5.9e-44	28.93	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_031735972.1	1.6e-41	26.35	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031735972.1	1.7e-14	55.21	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031739134.1	1.7e-14	55.21	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031740568.1	1.7e-14	55.21	uncharacterized protein LOC116403508 [Cucumis sativus]	[more]

Pages

BLAST of Spg029602 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0W6	2.9e-44	28.93	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BSG5	1.8e-38	26.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BY54	1.2e-37	31.15	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BY54	9.0e-14	51.58	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UMY2	1.9e-35	42.37	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Spg029602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 525..552

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029602.1	Spg029602.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process