Spg029596 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029596
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionexosome complex component CSL4
Locationscaffold2: 22015202 .. 22019950 (-)
RNA-Seq ExpressionSpg029596
SyntenySpg029596
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCTACGTCCAGTTCTCTGCTACCGATGCAGGTTCCACTAAAACTCCAGGGAGAAAGTTACAAGAGTTTACAGCGCTCAAGAATGATTTCTCTCACTTTTCTCTCACGAAAAAGGCTCACAAATCACTCTACAACAAGCTCTCAAAAACTCTTAAGGGAAGAAAAACAACTCACGGCAAAATAACTCAAGAAGAAAAAAAATTCTCAAAGCTCTCTATATCTTTCTTCTCACAAAGATAGCAACCTCCAATTTTTCTTCTCTGTAGGATGATCAAAAATGAAGATAACCTCTTCCCTTTTATAGGCACATCCACCACCATTTTAGCCAATCAAGTTTTGCCTTTTTTTCTTCCTAATTAAGTTTGACGGCTGCCTCAATTTTTCTTCCTTTCACACATTGCTGCCTTAATCTTTCTTTCTCAGCCAATTGATCAAGCTCCACCGCCCATATAGTTTGGGCTATTTCTTGTTTTGGGCTTCATAATACTTAACAATGAGAAACTAAAAAGCCATGTAGAGAGTTGGTTTTCAGCCGCTTCAGCTTTTTTTAATTGGCTACAGCTTGCTTTCTCATGCAAAATTGAAAAAACTCTTAGGCTGCTCTGAACTTCTCCTTATTCGGACGTTTCTGCTTCTTCACCAATCTTCAGCTTCTCATTCAATCCTTCAATCCTTCATATTGTTCATACTCGTTCTTGAGACATTCTTTTTCAATTTTCTCCTTGCTGGTCACTTATCCGTGAGGTGTGAGGCCGTTTTAGTTTTATTTTGTATTTTTTTTTCTAAGTTTTAGATGGGGAGGAGGATGATGATTGACATTTGATGTTTTACTTTTAGACTCTTAGTTTTTGTTCACTCTTAACATCTTCATGGTGTTTTGGAAGTACTAGAAATTGATTCTTGTCTGATGTTTTTGCAATTTTGGTGTTTATACTATTTAGTATTAATTTGTAAGGATTTGACATTTTGTGCAACTATAATATATAAATTTATGCTCTCTATATATATTATTTATTTATGCATATATCCATTGGAGCTCGCTTCACTCGAGCATAGCCTTTTGGTCGCCTCTCGCCTTGCGGTGACCAAGGGGTTTGTCACCTTGAGGTGCGCCTTGCACTTTGAAAACACTATCATAAATAAATAAAAAGTTCTATCGTGTTCTTTATGGTTTAGTCAAGCTTCACAAATCGTCCCGTCTTTACTATATGGACAATTTTTTTCTTTGTTTAGTTGTTCTCTATTTGAATAACCATGTCAGTTGACTATATTAGGGTTTAGGGCTAAGTAAAAAATAAAAGAAAATTGGTGAATTTTTCAATTGGGTAAAACACAATTTAGGAACAACTTCTGAGATTTAACCAAACCATAGGAATGAAATTGAAACTAAGTCCAAATAATAGGGATCAAATTGAACTTTTAAAAGAACAAAATTGAAGCTCAGCCCAAACCATGAGAAGACTAAATTTAAACTTTTAAAACCTTGGGACTAAATTGAAACTTTGCCCCAACCACAGGGACTAAATTTATAATTTAACATTTTATTTTCTCGTTTGGTACAAATGTCGGGCGGTTGCCTAGTGAGAGTAGTTAAGGTGTGTGCAAGTTGGCTCGGACCCTCATGGATATTAAAAAAAAAAGGAAAAAAACCAGGGAAAAAGTTAGAAAAAAAGGTTGAGGTCAAAAAAAGAGGGAGATAAAAAAAGAAACAAGACTGAAAAAATAGCTTCATTTTCTAGGAGAATATTACATAATAAAAAAAAAAATGAAGGAAAGAGAACAGGTGATACCTAACTAATAAACAAAAAGAAAAAGAAGCAAAGATAAGAAAACGGAAGAGAGAAGAAAAGATAGGAAAACGGAAGAGAGAAGAAAAGAGAAGAAAACGGAAGAGAAAGAAGAAAAGATAAGAAAACGGAAGAGAAAGAAGAAAAGAAAAGAAGGGTCTAATCCTTTTTGCTGCTGGAGTGTTTTTGTTGCAGTCACCTCACTGCAGGTTTTTTTTGGATTGTCCAATGAAAACAAATAGAGGTTACCTTTTGGTTTGGCTTTGGTTGCTTTTTAATAATGATAAAACAACGAGGCTGTAGTTTTAACATAATACAACAGACGGTTGTAATTAATCCTTTTTCCTTTTTGTGTACTACGAACTGAGGCTTACGCCTTTAAAGCCTCAAGGGTGTAAGCCTCCATTGAATTCTATTTGCTATGATTTTTCTTTTGACTCTTAAGTTGGTAGTTTTTCCCCCTGTTTTGCTATCCATTTTGATTGATGATTAGATTATTATTCTATGGATATCTCAGCCATTATTTCTTATCATTCTTTCCATTAATTGTAGGTCACAAAAGTAATGTCTAGAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGGTTTGAAACGTTCCTTTACGAAGCTTTTATTCATTCAGTTTTTTTTTTAAACATATTACTTTCTTTGGTGTAGAAAGCTCTTCTACCGTGTTTTATTTTTTTGATATATATTTTTTTATTTTCTTGACAACTTTTACACTCTCATAATAATTTCTGTTCCATGGAAATCAAATAATTAAATTTTATACAGATTAGGACAAAAGTTATGTTGATGGAAACATTGTTATAGAAAGCCTAAAAAATATGCACCTGTTTTGTGCCTAGGCTATGTAAAGCACGTCACTTTGTTGAGTATGTGCATCTCGCTTATGCGCAACATTTTTTTTTTGGGTAAATTACAAAAACCACCCCTAAAGTAGGGTGGTTGTAACAATTTGCACTCCTAAACTTTTAATTGTAAAAATTATACCCTCAAACTTTCGATCTTAAAATTAAACCCTCAAACTATGGTATAGGTAAAAATCAAACCGTCAAACTATCATAAATGTACAAATGTAAAAATTAGATCTATTTTACTTCATATTTATCCTCTCTTTATTTCCTCTTTCTCCTCCTTCCACTCTCCTGCATCCTACCTCTCTTCCTCTCTGTTTAATCAATCACACGTATCTGGGTGTCAATTGCTTTCTTATGTGCAGCTAAAAGGTCATTATTTTAGTGGGAATGTAGGATTCTAGTGCTCAGTTTGCTTGGGAATCACAATTTTTAGGTTGAATTTCATTTTCCGATGGATGGGTTCGTTCATTAGAGGTTTAGAGTTTGAAATTGCTTGAAAAGTTCTAAGGTTTTTTGTTTCTTCATCTGATGAGAGTGACAGAGTTCAGATTCAGGTTCCTTATACAATTATCATCCCAACTCGAAGCCTCAAATCATTGCTGCAAATTGACGATTCATTTCATTACATTACACTGGATATTCATCAAGGTTGGTAGAAATGGATCTTACAACGTGATCTTTCGAAGGAAAAAAACATAACAAGAAGAAGTCGAACAGGGTCGAGGCTGAAAACGATCAAATTCTTCAAAATTAGGGGCAAATTTCTTGAACTTCAATTGGAACTCTGGTTTTTGTCTGGAATCGACTTACTTGTTGTAGTGGCCGCCATTAGAGATGGTTCTGGAAGTTCTTCTTCCCTGGTCACTGGTGTTCGAATTGGAAAGGTGGAAGCTTCCATCTCTTGAGCTCTATTTTTTCAGGAGAGAGAAAAAAGAAATATAAGATATAAATGGATTAAAATAGATCCCATTTTTACCTTTATGATAGTTGGAGGAGGGTTTGATTTTTACATTTAAGTTAAAGGGTTTAATTTTTACCATTAGAAAGTTTAGAGTTCCAATTTTTACACTTTTGAAAGTACGAGGGTTTAATTTTTACACTTGAAAGTTTAGGGGTGTAATTGTTACTTACAACTATCATACTTTAAGGGTGGTTTTTGCAATTTGCCTTTTTTTTTTTTTTTTTTAATAAATTAGGATTAAATTAAGTATAAAAAGTTTAGAAAATATTGGTTCATTTCCTTCATTTGACCTCTCTTGAGGCATGCAAGTATGAGGTACATGAAATAATACTAAACTAAATTCAAGGTGCAAAAGACTTTATACCCTGCCATGTGCTACAATCACAAGTTTCTCTTCCTGGTTCAAACATACTGTTATGACAGAAAACGTAAATCAACGAAAGGGCGAAGAAACAACACTGAATTTACGTGGTTCACTAATGGTGTGTTAGCTACATCCACGAATAGAGGGAGAGAACGATTTTATTAGTGAGGAGTAAAACGTATGCAGATTACAGATATTAGGACAAAATAGGTTAAGAGGGTTTATATATAGCATCACTCTTAACCCTAACATAATAGGCCCAAAATAAAAGCCCAAAATGGAAATAACATATCTAATCTCTACACATAATTTAGCTTGGGGGGTTGCCCACCCCCGTATTTGGTCATTCGGAGCGCTTCATAACAGATTCAAGGCATATCAACACATACTATTCACCAAAGGTGTAACAAGTCTCTGTTCACCTAGGAAGAATCCTTCTTGTTTTGATTCTGATGGAGAATCAGATGTTAGTAGTGTGGAGTCAATTTTTCAAATTCTAGAATTAGAGTTGGTTGATCAGGTTGAAGACAATTCATTTGTTGAAGCATTTGAAAATCTATTTGAAGATAATGAACAAGATGTCGATAATTTCGAGGGAGTAGTTTCTCCGGTGGTTTCTCCTCAAATCCCAGCCAAATTTTCTTCTCTTATTAAGTTATGTGGCTTACAGATGCAGACAATTCTTAATTTGTTTCCGGTAGTTAAAGCTCTTTAG

mRNA sequence

ATGTGGGCTACGTCCAGTTCTCTGCTACCGATGCAGGTCACAAAAGTAATGTCTAGAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGAGTTCAGATTCAGGTTCCTTATACAATTATCATCCCAACTCGAAGCCTCAAATCATTGCTGCAAATTGACGATTCATTTCATTACATTACACTGGATATTCATCAAGTGGCCGCCATTAGAGATGGTTCTGGAAGTTCTTCTTCCCTGGTCACTGGTGTTCGAATTGGAAAGAATCCTTCTTGTTTTGATTCTGATGGAGAATCAGATGTTAGTAGTGTGGAGTCAATTTTTCAAATTCTAGAATTAGAGTTGGTTGATCAGGTTGAAGACAATTCATTTGTTGAAGCATTTGAAAATCTATTTGAAGATAATGAACAAGATGTCGATAATTTCGAGGGAGTAGTTTCTCCGGTGGTTTCTCCTCAAATCCCAGCCAAATTTTCTTCTCTTATTAAGTTATGTGGCTTACAGATGCAGACAATTCTTAATTTGTTTCCGGTAGTTAAAGCTCTTTAG

Coding sequence (CDS)

ATGTGGGCTACGTCCAGTTCTCTGCTACCGATGCAGGTCACAAAAGTAATGTCTAGAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAAAAGTTTACTGGAATTATAAGAGTTCAGATTCAGGTTCCTTATACAATTATCATCCCAACTCGAAGCCTCAAATCATTGCTGCAAATTGACGATTCATTTCATTACATTACACTGGATATTCATCAAGTGGCCGCCATTAGAGATGGTTCTGGAAGTTCTTCTTCCCTGGTCACTGGTGTTCGAATTGGAAAGAATCCTTCTTGTTTTGATTCTGATGGAGAATCAGATGTTAGTAGTGTGGAGTCAATTTTTCAAATTCTAGAATTAGAGTTGGTTGATCAGGTTGAAGACAATTCATTTGTTGAAGCATTTGAAAATCTATTTGAAGATAATGAACAAGATGTCGATAATTTCGAGGGAGTAGTTTCTCCGGTGGTTTCTCCTCAAATCCCAGCCAAATTTTCTTCTCTTATTAAGTTATGTGGCTTACAGATGCAGACAATTCTTAATTTGTTTCCGGTAGTTAAAGCTCTTTAG

Protein sequence

MWATSSSLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQIQVPYTIIIPTRSLKSLLQIDDSFHYITLDIHQVAAIRDGSGSSSSLVTGVRIGKNPSCFDSDGESDVSSVESIFQILELELVDQVEDNSFVEAFENLFEDNEQDVDNFEGVVSPVVSPQIPAKFSSLIKLCGLQMQTILNLFPVVKAL
Homology
[Close]
BLAST of Spg029596 vs. NCBI nr
Match: XP_038879159.1 (exosome complex component CSL4 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++  +VTKVMS+MASADIMCVGPKSVKEKFTGIIR Q
Sbjct: 77  SIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQ 114

[Close]
BLAST of Spg029596 vs. NCBI nr
Match: XP_004144376.1 (exosome complex component CSL4 [Cucumis sativus] >KGN58353.1 hypothetical protein Csa_000995 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++ ++VTKVM++MASADIMCVGPKSVKEKFTGIIR Q
Sbjct: 76  SIVIVRVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQ 113

[Close]
BLAST of Spg029596 vs. NCBI nr
Match: TXG66148.1 (hypothetical protein EZV62_007423 [Acer yangbiense])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++  +VTKVM+RMASADIMCVGPKSVKEKFTGIIR Q
Sbjct: 69  SVVIARVTKVMARMASADIMCVGPKSVKEKFTGIIRQQ 106

[Close]
BLAST of Spg029596 vs. NCBI nr
Match: XP_023516677.1 (uncharacterized protein LOC111780489 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++  +VTKVMSRMASADIMCVGP SVKEKFTGIIR Q
Sbjct: 76  SIVIARVTKVMSRMASADIMCVGPNSVKEKFTGIIRQQ 113

[Close]
BLAST of Spg029596 vs. NCBI nr
Match: XP_034682582.1 (exosome complex component CSL4 [Vitis riparia])

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-05
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++  +VTKVM+RMASADIMCVGPKSV+EKFTGIIR Q
Sbjct: 78  SIVIARVTKVMARMASADIMCVGPKSVREKFTGIIRQQ 115

[Close]
BLAST of Spg029596 vs. ExPASy TrEMBL
Match: A0A5C7IAI2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007423 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-06
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++  +VTKVM+RMASADIMCVGPKSVKEKFTGIIR Q
Sbjct: 69  SVVIARVTKVMARMASADIMCVGPKSVKEKFTGIIRQQ 106

[Close]
BLAST of Spg029596 vs. ExPASy TrEMBL
Match: A0A0A0L935 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-06
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++ ++VTKVM++MASADIMCVGPKSVKEKFTGIIR Q
Sbjct: 76  SIVIVRVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQ 113

[Close]
BLAST of Spg029596 vs. ExPASy TrEMBL
Match: D7TDS0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0043g00400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++  +VTKVM+RMASADIMCVGPKSV+EKFTGIIR Q
Sbjct: 78  SIVIARVTKVMARMASADIMCVGPKSVREKFTGIIRQQ 115

[Close]
BLAST of Spg029596 vs. ExPASy TrEMBL
Match: A0A6J1DE54 (exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++  +VT VMSRMASADIMCVGPKSVKEKFTGIIR Q
Sbjct: 75  SVVIARVTNVMSRMASADIMCVGPKSVKEKFTGIIRQQ 112

[Close]
BLAST of Spg029596 vs. ExPASy TrEMBL
Match: A0A1S3CMV8 (exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 7   SLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           S++  +VTKVM++MASADIMCVGPKSVKEKFTGIIR Q
Sbjct: 76  SIVIARVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQ 113

[Close]
BLAST of Spg029596 vs. TAIR 10
Match: AT5G38890.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-05
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 5   SSSLLPMQVTKVMSRMASADIMCVGPKSVKEKFTGIIRVQ 45
           + S++  +VTKVM++MA+ DI+CVG K+V+E F G+IR Q
Sbjct: 69  TGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQ 108

The following BLAST results are available for this feature:
BLAST of Spg029596 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879159.11.1e-0581.58exosome complex component CSL4 [Benincasa hispida][more]
XP_004144376.11.4e-0578.95exosome complex component CSL4 [Cucumis sativus] >KGN58353.1 hypothetical protei... [more]
TXG66148.11.4e-0581.58hypothetical protein EZV62_007423 [Acer yangbiense][more]
XP_023516677.11.9e-0581.58uncharacterized protein LOC111780489 [Cucurbita pepo subsp. pepo][more]
XP_034682582.12.5e-0578.95exosome complex component CSL4 [Vitis riparia][more]
BLAST of Spg029596 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg029596 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5C7IAI27.0e-0681.58Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007423 PE=4 SV=1[more]
A0A0A0L9357.0e-0678.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1[more]
D7TDS01.2e-0578.95Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0043g00400 PE=4 SV=... [more]
A0A6J1DE541.2e-0581.58exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE... [more]
A0A1S3CMV81.2e-0578.95exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1[more]
BLAST of Spg029596 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G38890.13.4e-0552.50Nucleic acid-binding, OB-fold-like protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029596.1Spg029596.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0000176 nuclear exosome (RNase complex)
molecular_function GO:0003723 RNA binding