Spg029580 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029580
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold2: 20673946 .. 20680411 (-)
RNA-Seq ExpressionSpg029580
SyntenySpg029580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATGGAGTTGGCTGGTTTGGACATGCAAAAACAGAAAGTAAATTCTCTCAAAAACACCATGTTTTCTCTCATGTTTTTCTTGGGGGTTTCAAGCTTTCTTCCCACAAATTCATCACTCATAAGCTCCCACAAGCTCGTTCTAAGGCCGGAGAATAGCGGGGAAGATCTCGGTGATCGTCCACAACTCGATCGTGTTGAGAATCATCCAACCAAATGCTCCAATCGAGCTCCAAAAGGTTAGTAAAACGGAGCCTCTGTTTTCGTGTTTTGGAGCATGATTTTCCATAATGAAATTAAGTGCCTAAGATCTGTAATCGCTTCCGCTAGTGTCTCGTACACTCCTTCAATTGGTATTAGAGCATGGTTTGAGCACTTGATTTCCATTAATTTCGAGTTTGGTGGGTAAATTTCAATCGTTGAATCTGTTGTGGGGCTAAAGTGGATGTTTCGGTTTTGGCATCAAATTAAGCTTTCAATTCTTGATGAAAATTGTAATAGCCTACATGTATATGGGCTTTAATGTCTTGGCTAGAGTCTGAAAAATTTGGGAGTCAATAGACAAGAAATTGTGGGATTGGAATTCCGTAATTCCGTAAAGCGGAAGCGTGATTGGGACCGATTCGTAATTAATTTTGTTTAATCTAAAATACCAATACATTGGCAATAAACTTAGAACTATTCTAGATTTATATTAGGGCTAAGCATACAAAAATATTAGATCTAAATCTAATTTATATAGTAACAAATTACTTACTCTCGTTGACGACTCAGATTAAATTCACCAACTGCTTGTGAATTAATCACGAACTAGTGCGAACACCACCACTATGGCTACATCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGAGTAGGAGAATGAATGGGATGCCTTTCACCCCACCCCAGGGGTCCTATATATAGTAAAGACCAAGACCTTTTTCCTAATAGGAAAAGGAAGACCTTTTCCTAATAGGAAAAAGTCTCTAATTTTAATAAATAATTAATTAATTCCATAATTAATTAATTTCCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATATTTTCTCTCAAGAATTAATTTTTGAAATTAATTCAAAAATTATATTATAAAGTTTCATAAACTTTATATTATAATGCATCAATATACATTATACGATTCCCCAAATAAATTGAATACTTTCAATTTACAATTTATACTTAATTGCCTCAAGTCTCTTTACGAGCTACCAGTGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTAACCAAGTTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGACCCACAGCTGCACTCTTCTCACTGTAGAATATTTCTGTGTTCACGGATATTGACCAATGCAGTAAGTCAATCCTTCACGTGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCCTGGGTTACCTCTGGTTCCTTAAGTACCGCTGATCCCTCTAATGAACAAGTCGTTTAGGGTCCAACCACTAAACAGGAGTTCCTCTCGGGCCAGGAGAGGACGACGCACCTTTGTTCAAGTCCCGGAATCAGCCCTTAAGGGAACACACATCTACTTAGCCCAATAGGGGAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGTAGGCTTATTGAGTCGGCGAACTGGCCATTCTCACCCATACAAATCTAAGGACAATCCCTCCTGAAAGGGGTTCATAACAGACTCAGGATTGAGATTGAGTTACCTGGGTCATCCTATTGAAATAGAAACCTAAACTAGTTAACGACGTTACATCTAGTGGTTACTATTTCGCGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCAGATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCCTATACTATAGACCTTTTAGGTTGTTACTTGGACACCGATCCCCGTATGTCCCCACATACTAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATTACTCAAATAACGCTTTATTGAGATCGATTAATTTGTTTCATTTACTATCTATGAGTTTTAGGGCATAAAACCCAACAGAAACTAGGCTGTAACCGAAGAGAGAAGACAAGATGCTCGCTGACCGAAGAAAACAGAGGATGAATTTCTGGGCTGCTGTATGAATAGCGTCTCGACGCTGATGCATTTTCAAATGGACGAGCGTTTTTAGCGGTGGTTCGAGCGGTTCAAATAAAATTCGATTCGGTCCACCGTTTTCCTGGCCGGTTTGGTTGGTTCAAGCCTGGTTCAACATTTTTTCAAGTCATGGAGTCCGGTTCAAGGCCATTTTGGATGGTTTAAGATGGTTCGAGGTGTTCGGGGCCGGTTCGGGAGCTGTCCAAGGCGGTTCAACCATTTATTTAATTATTAATGTAATAATTTAGCTTAATTAGTTTGTTTGGATGCCAAAGCCGGTCCACTTTAGTGTGTTTAATTATTTATTCATTAGGAATGTATGTTATAATTAAACTAGAATGGAATATGCATAATGTATGTCATATAGATTTAAAATCCCACCATAGGAAAGCATGTTACATGCATTAGTAATTAATTACAAGGGTTATAATAAAACGAATGCATGTTAGGTTTAATGATAGATGCATGCTGGATTGTTTTATTTTTTGTTTATAAATGTTTAAATATAAGCGTTATATTAATAAACAAAAACAAACGAGTATGCAGCATGAAACCACCTTAGCATTGATGAATGTTATAGGTTTTCTATATTATAAAGTGTTATAAAATCGAGATAGACGTTAAAACCTATAACAAAGATAAATGCATGCTTACTTAGGGTTAATAGAATTCAATTTCGAATGATTCGCATAGAATAGGTCGATATCTTGTAAAGCTAAGGTTACAAGAGAACTCACCCGGCAAGATGTTGTCTAAGGCTGGAGGTATTTAAGCTGACGGTTTACGGAACACCTCCTACCTGGACATCGAGCCGGTACTTGAGTTAGGTTAACCCGGTTTTATGAGCATGCGTGAGAGATGTGAGGTTTTATCACCTAGACATCATAGCGTAATAGTTATGCCGTTGAAAATCACCTAGACATACGTTGTTTCAAAACGTTTATGCTTTGTGAATGGTGACTTGTTTTATATAACTTGAATTTTAATTGTTATATGCTTTCATCACCATTAGAAGCATGTTATATGATTAATTCATTAAAAGTTATAAATAGTTATAAGGTTAATGAATAGAAACTGTCAACCTATAGTTGCATGCTAACATAGGATCTTAGGTAAAATGAATGTAATTTTTAAAACGTTTAAAATTAAATTAGACCTAAGATCACTATTTTCTAATAGGATTAGAAAAATGTCCTACTTAGTGTTTTAATAGAGTTAAAATAAATTAAGTAGGATATAAGGCTTTTGTTATAAGGGAACTCTCCCGGTAATCCAGTACCTGAGTTGAATTAACCACAGTCTTATTAGCATACAATGTCGCTAGGAAATTAAAAAGGTTTAATTCGCCTAGACGGTAGAGAAAAGACCTTATTTAAAACCTAAATATAAGGCATAAACTTAGATAGATTCGTTTAGCCGGAATTTACCTAAGTAAAATCACCCTAATAAATATAAGACACTTCAGTGGGAGGAAAAGTATAAAAACAAGATGCTCATATCAAAGTTTTTACTCTCACGTCCCCCTTTGTTCACACCGTGAGATCCATGCTCGGCTTTGTGTCGTTTTAGCGCGGCCTCCCTTTGGAGAGTGTTTGCATGGGTCAATACCAAGGTGAATGGGGAAAGTGTTTATAGTAAGTGGGAGAAGGATGCGTGTCAACGCATCCTGCGATCTCCTCCCTTAGGTTGAACCGTGAGATTCTTATGATCCGCCTGCGTGTCGTTTTAGCGCGACCATCCCATTTGGAGGGCCTGATCATAGGTTTCGGAACACCGCGAACTCCAGAAATGGATAGGGTCACTTAGGGTAATCACCAACAGTTGTCTTTCCTATAGGTATAGCCTGTTGGTGTGTCTCTCTGGGATCTAAACGTGGGAGGGTCACACTTACAGGATTGAGATCCTGACCAAACAAACGGTAGCTAATGTAATATAGGCATGTGAGATGTTCTGATATTACCAATTGGCTGAGATAAGTCTCAATTCAGAGGAGTAGCAGTTGATCACCCATTTGGTTACTGTTGCTCTAAACCTCTGAAGTATCGTTGCAAAAGAATTATGATTCTTAGGGTGCGTAATTACTTTTGCTAAATTGATTGGATTAGGTAATGGGTTAAATATTAGGCAACCAGTTTAAGTTTATTTGTTTATTTTTTCAGCAATAGGTTCTATAGGCCTCGTCTATATGCCAAATTAGTTATTGGCCGGTAAATACATACGACTAAGAAAACAAACTTAAACGTTGAGATCGTGGTAAGTGATTTAGGAGGAATGTCCTTGAGATGTCATCCTCGAAATGTCCATAAACTGCTTAGCCAATAAGAACATGACCCAAGACTCTAAATATGAGATTTGTTTGTCTTGAGAACGTACTTAGTAAGAATAAAGTGATTCTACCTGAATATTTGTTTCAGGGCCCACTAATCACGTATGTTCTTTTCAGGAATGAGTTCCTGGCACTAGCTGTGAACTAGTGAAGATGACTCTTAGAGTTGAAATAGAAGAGTTCATCTCGGTTAAAGCAGTGAAAGACATAATGTTATTCTTCTCTAAGGAACATTACATATATTTTTTTAAATGTATATGGTTCCTAAGATTAAAAAGAAATCTTGATTTCTATATCTTGTTTGCTAGAACAAGGCTATTTTGTTACCTTTTAATAAATGAACTGTTCATTTCAAAAGGATGCCAATATTTGTTCTGCAAACATGAAGAATAACACATATGTTTTAAGATCGAAAGAGTCTAGAGCGATTTTAAATTATGAGACATTTAAATCACTGAGACTCAAACAAAAGGCAACGTGTTTCTCTAAAGTATATGTCTTTAGCACTTGAGGTTAGACCATATTAAAACTCAATAGGATTGAGAGGCTGGTCAAGAATGAACTTCTAAACAAAGTTAGAAGACAACTCATTACCTCAAAGTCATGTCTTAAGAGTAAGATGACTTAGATAACCTTTTACTAGAAAAAGATTATCGTGCCAAAAGAACCCTTAGAGCTAATGCATTTTGATCTCCGAGGTCAAATGAATACTAAAGTTCAAACAAGGTGTGAATATTTCATCAATTTCACTGATAATTATTCAAGGTATGTTTATCTATACCTATTGCATCATAAGTCCGAACTCTTGAAATATTCAAGAAGTATAAGGCCGAGGTTAAGAACCAAGATTAGGTAAACCGATAGGGACACTTCGATACGATCGAGGTGGAGAGTATATGGACTCAAGATTCCACGTCTATTTGATAGAACATGGATTTTCGTCCTAACTCTCAACGCCTAGTACATCATAGTAGAATAATGTATCGGAAAGGGGAAACAGAACCTTGTTAGACATGGTTCGTTAGAAATTAAACTATGCTAAGTTGCCTAAACTCGTTTTGGGTTATGTAGTAAATACTGCAGTTTAAAATACGAATATGGTTCTCTCAAAAGAATGTTTTTTGAAACATTGTTTGAATTCTGAAAAGAGCATAAAGTGGTTTATGTTGTTTCAGAACCTAGGGATGTCCTACATATATGTTTGAGACAAACTCGAAGGAACTAGAACCTTATTCGACTGTATACCTATTTGTAGGTTATTCTAAAAGAAACGAGTTATGGTTGATTCTTTGTTCAAGAAAAAGTATTTGTATAGACAAATTCATATTTTCCTAAAAGAAGGCCACGTTAAAAATCACAAACCACGTAGTAAGACAATGTTAAAGTAAGTTATCTTGTGAAGCTACAAAATGAATCAACAAAGAGTTGTTGATTAAACTTGTCAGACAACAAAGAGTTGTTGATCAAACTAGTCTTTCAACAAAGGGTTGTTGATCGAGCTGGAACATTGAGTCAGTCCTGTCCTTCTCAATTGTTGAGAGAGCCTCAACGTAGTGGGAGGGTTGTTAATCAACCTAATGAATACTGTAAGAGTTTAACTGGAACTCTGATTGTCATACCTAATGACAATATCGAGGATCCAATGACCTTTAATCAGGAAATGGATGACATGGATAAAGACAATTGA

mRNA sequence

ATGGTAATGGAGTTGGCTGGTTTGGACATGCAAAAACAGAAAGTAAATTCTCTCAAAAACACCATGTTTTCTCTCATGTTTTTCTTGGGGGTTTCAAGCTTTCTTCCCACAAATTCATCACTCATAAGCTCCCACAAGCTCGTTCTAAGGCCGGAGAATAGCGGGGAAGATCTCGGTGATCGTCCACAACTCGATCGTGTTGAGAATCATCCAACCAAATGCTCCAATCGAGCTCCAAAAGTGTCTCGTACACTCCTTCAATTGAGTCTGAAAAATTTGGGAGTCAATAGACAAGAAATTGTGGGATTGGAATTCCGTAATTCCGTAAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACATCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGACCCCCATTCGGTCTTGCCCCTGAAATGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCAGATAGTGTCACCAGGATAAGAGGAGTAGCAGTTGATCACCCATTTGGTTACTGTTGCTCTAAACCTCTGAAGTATCGTTGCAAAAGAATTATGATTCTTAGGGGCCCACTAATCACGGTTGTTGATCGAGCTGGAACATTGAGTCAGTCCTGTCCTTCTCAATTGTTGAGAGAGCCTCAACGTAGTGGGAGGGTTGTTAATCAACCTAATGAATACTGTAAGAGTTTAACTGGAACTCTGATTGTCATACCTAATGACAATATCGAGGATCCAATGACCTTTAATCAGGAAATGGATGACATGGATAAAGACAATTGA

Coding sequence (CDS)

ATGGTAATGGAGTTGGCTGGTTTGGACATGCAAAAACAGAAAGTAAATTCTCTCAAAAACACCATGTTTTCTCTCATGTTTTTCTTGGGGGTTTCAAGCTTTCTTCCCACAAATTCATCACTCATAAGCTCCCACAAGCTCGTTCTAAGGCCGGAGAATAGCGGGGAAGATCTCGGTGATCGTCCACAACTCGATCGTGTTGAGAATCATCCAACCAAATGCTCCAATCGAGCTCCAAAAGTGTCTCGTACACTCCTTCAATTGAGTCTGAAAAATTTGGGAGTCAATAGACAAGAAATTGTGGGATTGGAATTCCGTAATTCCGTAAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACATCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGACCCCCATTCGGTCTTGCCCCTGAAATGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCAGATAGTGTCACCAGGATAAGAGGAGTAGCAGTTGATCACCCATTTGGTTACTGTTGCTCTAAACCTCTGAAGTATCGTTGCAAAAGAATTATGATTCTTAGGGGCCCACTAATCACGGTTGTTGATCGAGCTGGAACATTGAGTCAGTCCTGTCCTTCTCAATTGTTGAGAGAGCCTCAACGTAGTGGGAGGGTTGTTAATCAACCTAATGAATACTGTAAGAGTTTAACTGGAACTCTGATTGTCATACCTAATGACAATATCGAGGATCCAATGACCTTTAATCAGGAAATGGATGACATGGATAAAGACAATTGA

Protein sequence

MVMELAGLDMQKQKVNSLKNTMFSLMFFLGVSSFLPTNSSLISSHKLVLRPENSGEDLGDRPQLDRVENHPTKCSNRAPKVSRTLLQLSLKNLGVNRQEIVGLEFRNSVKRKRDWDRFCEHHHYGYIGMTLRLLEAGDWWESRGSLEGNSLRPPFGLAPEMDTPTRMSPTWMLWIIASVSNTRWVVSDSVTRIRGVAVDHPFGYCCSKPLKYRCKRIMILRGPLITVVDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDDMDKDN
Homology
[Close]
BLAST of Spg029580 vs. NCBI nr
Match: KAA0054700.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ95597.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 6.6e-10
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQLLR PQ SGRVV+QPN Y   LTGT +VIP+D +EDP+++ Q M+D
Sbjct: 32  VDETATSDQSHPSQLLRMPQCSGRVVSQPNRYL-GLTGTQVVIPDDGVEDPLSYKQAMND 91

Query: 288 MDKD 292
           +D D
Sbjct: 92  VDND 94

[Close]
BLAST of Spg029580 vs. NCBI nr
Match: KAA0065400.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-09
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQ LR P+RSGR+V+QPN Y   LT T IVIP+D +EDP+++NQ M+D
Sbjct: 465 VDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYL-GLTETQIVIPDDGVEDPLSYNQVMND 524

Query: 288 MDKD 292
           +DKD
Sbjct: 525 VDKD 527

[Close]
BLAST of Spg029580 vs. NCBI nr
Match: KAA0050437.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-09
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQ LR PQRSGR+V+QPN Y   LT T +VIP+D +EDP+++ Q M+D
Sbjct: 350 VDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYL-GLTETQVVIPDDGVEDPLSYKQAMND 409

Query: 288 MDKD 292
           +DKD
Sbjct: 410 VDKD 412

[Close]
BLAST of Spg029580 vs. NCBI nr
Match: KAA0046800.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-09
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQLLR P+RSGRVV++PN Y   LT T +VIP+D IEDP+ F Q M+D
Sbjct: 220 VDETTTSGQSHPSQLLRMPRRSGRVVSRPNHYL-GLTETQVVIPDDGIEDPLYFKQAMND 279

Query: 288 MDKD 292
           +DKD
Sbjct: 280 VDKD 282

[Close]
BLAST of Spg029580 vs. NCBI nr
Match: KAA0067617.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ97146.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-09
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQ LR P+RSGR+V+QPN Y   LT TL+VIP+D +EDP ++ Q M+D
Sbjct: 32  VDEPTTSGQSHPSQSLRMPRRSGRIVSQPNRYL-GLTETLVVIPDDGVEDPSSYKQAMND 91

Query: 288 MDKD 292
           +DKD
Sbjct: 92  VDKD 94

[Close]
BLAST of Spg029580 vs. ExPASy TrEMBL
Match: A0A5A7UHE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00090 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQLLR PQ SGRVV+QPN Y   LTGT +VIP+D +EDP+++ Q M+D
Sbjct: 32  VDETATSDQSHPSQLLRMPQCSGRVVSQPNRYL-GLTGTQVVIPDDGVEDPLSYKQAMND 91

Query: 288 MDKD 292
           +D D
Sbjct: 92  VDND 94

[Close]
BLAST of Spg029580 vs. ExPASy TrEMBL
Match: A0A5A7VDX8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00700 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.4e-10
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQ LR P+RSGR+V+QPN Y   LT T IVIP+D +EDP+++NQ M+D
Sbjct: 465 VDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYL-GLTETQIVIPDDGVEDPLSYNQVMND 524

Query: 288 MDKD 292
           +DKD
Sbjct: 525 VDKD 527

[Close]
BLAST of Spg029580 vs. ExPASy TrEMBL
Match: A0A5A7TUI8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00920 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.3e-10
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQLLR P+RSGRVV++PN Y   LT T +VIP+D IEDP+ F Q M+D
Sbjct: 220 VDETTTSGQSHPSQLLRMPRRSGRVVSRPNHYL-GLTETQVVIPDDGIEDPLYFKQAMND 279

Query: 288 MDKD 292
           +DKD
Sbjct: 280 VDKD 282

[Close]
BLAST of Spg029580 vs. ExPASy TrEMBL
Match: A0A5A7U7T0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00310 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.3e-10
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQ LR PQRSGR+V+QPN Y   LT T +VIP+D +EDP+++ Q M+D
Sbjct: 350 VDETTTSGQSHPSQSLRMPQRSGRIVSQPNRYL-GLTETQVVIPDDGVEDPLSYKQAMND 409

Query: 288 MDKD 292
           +DKD
Sbjct: 410 VDKD 412

[Close]
BLAST of Spg029580 vs. ExPASy TrEMBL
Match: A0A5A7VKD2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00180 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 228 VDRAGTLSQSCPSQLLREPQRSGRVVNQPNEYCKSLTGTLIVIPNDNIEDPMTFNQEMDD 287
           VD   T  QS PSQ LR P+RSGR+V+QPN Y   LT TL+VIP+D +EDP ++ Q M+D
Sbjct: 32  VDEPTTSGQSHPSQSLRMPRRSGRIVSQPNRYL-GLTETLVVIPDDGVEDPSSYKQAMND 91

Query: 288 MDKD 292
           +DKD
Sbjct: 92  VDKD 94

The following BLAST results are available for this feature:
BLAST of Spg029580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054700.16.6e-1059.38gag/pol protein [Cucumis melo var. makuwa] >TYJ95597.1 gag/pol protein [Cucumis ... [more]
KAA0065400.11.1e-0959.38gag/pol protein [Cucumis melo var. makuwa][more]
KAA0050437.11.9e-0957.81gag/pol protein [Cucumis melo var. makuwa][more]
KAA0046800.11.9e-0960.94gag/pol protein [Cucumis melo var. makuwa][more]
KAA0067617.13.3e-0957.81gag/pol protein [Cucumis melo var. makuwa] >TYJ97146.1 gag/pol protein [Cucumis ... [more]
BLAST of Spg029580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg029580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UHE83.2e-1059.38Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G0009... [more]
A0A5A7VDX85.4e-1059.38Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00700... [more]
A0A5A7TUI89.3e-1060.94Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G0092... [more]
A0A5A7U7T09.3e-1057.81Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G0031... [more]
A0A5A7VKD21.6e-0957.81Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G0018... [more]
BLAST of Spg029580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029580.1Spg029580.1mRNA