Spg029561 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029561
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold2: 21608610 .. 21615029 (-)
RNA-Seq Expression	Spg029561
Synteny	Spg029561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTATCAACTCGAGCTGCAGTCCTGAGGAGCTTGGGTTGGTTGTTGTAACCTGCTGGACGATTTGGATGTATAGAAACAAAAAAGCGCACGGTGAATCCTTACCCCCAATGGATAAAAGAAGTCTATGGATCTCGAATTACCTGATAAAGTTTTCAGAGGCAAATGCGAAAAGGTCGCCAAAAAGAAGTATTCCTGTAGCGCCCGCCTCTTCTTCCTCAAATAGCATCTGGATTCCGCCACCTCCTGATTTCTGGAAAGTGAACGTTGATGCTGCATGGAGCTCCTCCCTCCCTAAGACGGGAATCAGAATTGCATTTAGGAAATCTGATGGGAGCTTGGAAGGGGCTAGAGTACGTTTTCTTGACCTAAATTTCGTAGCCCCTGAAGCAGAGTTGAGAGCTATCCTAGAGGGCGTTCGTCCGGCGGTGGATTTAGGGTATCGAAGTGTGATAATAGAATCCGACTGTTTGATGGCTGTAAATTTCTTAAACAAAACCACGAGGCCTAGAGTAGTTTGGATGGGCTTATTGAGAGTATCTGGGCCCTTGGCCCAAAATTCCGTGAGATTCGTTTTGTGTTCAGCCCAAGGGGGAGGAATAGGGTAGCAGATCAATTGGCAAAAAATGCCAGACTTATGAAATACAATGTAACCTGGGTTGATTGTATCCCAGATTGGGTCTGTTCTTTGGTCGAGTATGACTGTCTCCATTTGCCCTTAGTGGCGTAATAATATTTGATGTTTGTTTTCAAAAAAAAATTTGAAATGATTTAATTAAATGATTTAATTAAATAAATCTCATTCCTATTATAATTGGAAAGAGTAATTAATTTTTAATTAATTAAATATGCCCTTAACCTATTATGAATAGGAAAGGGATATGACACTCTATATAAGCTGTAGAATGCCTCCCAATTGATTTATCCCATTCAATTCACTCTCTGAATTCAAAGAATTCTCCCTAAAATCAAGAATAAGGTTTTCACTACCTTGGCCTCAAATTCTCCAGAGAATACCAGTGTTTCCTAGTGGTAGTGTTCCAAGTAGTTCATGATAATTTCTCAAGCAGTTGGTGAATTTAATCTGAGTCGTCAATGAAAGTATGTAACTTATTACTCTATAAATTAGAATTAGATTCTATAGATTTTCAGCGTGCTTAATCTAGATATCTATTAAATTATGAATGTATATATGTTGCTAGTGTATTGGTATTTCATAATTCTAAATTAATTATGAATTGTTCCTGAAACCGCTTTCGCTACGTCGGGATCCCGTTCCCTTAATTGGTAACAGAGAAAATCGTGAAATTAATTAGAATTTTCGAAATTTTCACTTTGCTTGGTGGGATTGATTGCGTTGTGGATGTATTTTTGCGAATGAATGTTTACGGTAATTTTGGCTTTAGAATTTACTGCTTTGATATGATCAAAATTGTAAGGGCCCTTGTGTTTTTGGACAATCATTTGTAAATTCGAGTCTTATATAAGTCCGTGTCTAGATTAAGCTCAAAATTCGATGAAGATCGAGATCAATTTTGGCCAAAATCGCAAGAACAGTCGCAGATATTCCAAGAAATCGCTCTCAGACGCAACAGCGTCTTGACGCTGTGTCGATTCCCGGCCACATGTGGAAAACTGACAGCGTCGAGTTTTTAGCAATGGCGGCCAAGGTTTCGACAGCTCCGGTTCGTGATGTAGGCAGTTCGGTTCGGTCGGTTTAGTTTCGGTTTGTGGTGGATTGACTTGGTTCAAGGTTTTGGAGGTCGGTTCGAGTTGGTTCGAGTCGTGTTGATTCGGTTCTGGAGCGGCATAAGACTTGTTAGGATAAAATTATGCTAAATTAATGTAATTTATTGCTTTATTTTATCATAGGGGTTGATGCGCAATTTGCTTACCGCAAGTGTATGGGTCAAGTAATAATATAGTGTTTTCGTGTAAAACGAGTGTCGTCCTCTGGATTGGTTTTCTAGCAAATTAAGTATCGTGAATGCTTTTGTCCAATTTTATTTAGGGAGCAAAACTCAATGATAAAGATAAATCTAAAGACAAAAAGCATAAAATAAAGGTGGAGACTCAAATGGAAAGACTCTTAGGGAATTGATTTCGTTGATTAAGATTGAGGATTGATTAATGGGATGAATTTAGCATGCAATTATTCTACCAAGTCTAGGAACCTTTTATCACAACTATCTCTCCCGAGCATAATTGATTCTCATGCATGCAACCAACTTGATATCCCTATCTAAGTTCATTAACATGCAAGGCTTTGAGTTTAGTTCTTCAAGCAACTTCTAAAGTTATTCCAAATCCCGTCACAAACTTAGAATTTCTACTTTAGTCATGCAATTAAATAAAGTAAGTCTTAGGCCAAATCCCCTCTCCCGAGCAAGATTCAACACTCGAATCATTCAACTAGTGATCAAGTAATTGAAAGCATTTAACCATAATTGCATAGGTAAAATAAATGCATATTCATACCACAAAATCAATCCAACAAACTAAAACAACTACATCAATCCCTAAGACAAACAACTAGCAATTCATAGTCTTTAAACTACAAACACTAATTGAAAGAAAAGCCATAAAAACTACAAGAGTTAAGGGAAAGAGAAAGGAAAACTCGAATCCGCCGACACCGCACGTCCCCGTCACGATCTCCACGTCTTCTCGCTTGATTCCCGGTCCTTAGCCTTGCCTTTAGCTCCCACAAAAGGTCTCTAGTCGAAATTAGGGCTAAAATCTCACCAATTGGACTCCCCTTGGCCGTAGCACAAAAGGATGAATTTATAGAAAATCTGCCGACAGCGTCGAGACGCTGTCGCGATTCTGCGGATTTGGAAAATTCGCCGAGAGCGTCGCGACGCTATGAGTTTTTTTTTTTTTTTTTTTTAGATTGAAGACTCCATTTGACTCCAATTGCTGAATTAAGCTTCAAACACATACTTCCTACAAATAAAACATAAAAATGCATAAATTTGGGCAAATAATTGTAAAAGACTAGCTTAATTAATCAGAGAAAAATAGCTAGCTATGCTCGCTATCAGGGGTCAAATTATCGGTTCATTTGCTATTTAAATGCTTTATGGATGTCATTTAGATTAAATCCCACCTTAGGTTATGCATGTTCATGCATTTTAATATATTATAATAGTTATAATGTATGGTATAATGCATGATGAATGAATTTCATATATGAAATTAAATAATGTCTTATGAATGCTTGGATGATTTTTCATGTTTGGTTTAATGTAAATAAGTTATGTTCATTAAATATGAAAAATCAAAGATGTATTGAGCATGAAATATCCATAGATTTAATATAAGTGTTATATTATTCATGCAATGCATTATGTATGGTTTATTTATTTAATTTGAATATGATTTTTAATTAAATAAAACAATAGAAAATATGATTATAGGGCTAATCATTAAAATTTGAAAATAGTTTTTAATATTAATGATTAGAAACCAAAAACCTATAATAAAGAATTGCATGCAAACATAGGATCATAGGAAAATGAATTAATTTTAAAATGTTTAAAATTAATTAGACCTAAGATCACATTAATTCTAATAAGATTAGGATTAAGTCTTACTTAGTTTTAAAATAGTTTTAATATAACTAAGTAGGACAAACATATCCTATGGTTATTAGGGAACTCTCCCGATGAAGTTCTGTCTAAGGTTGGAGGTACTTAAGATGACAGTTTACGGAACACCTACTACTTGGGAACTAACCCGAAACCTGAGTTGAATTAACCATAGTTATGTTAGCATGCAATGTCGCTAGGTTAATTAAAAGAGTTTAATACACCTAGATCTTTAGAGTAAAGATTTTACATTACTATGGTTATAAGGGAACTTTACCGGTAAGGTTCTGTCTAAGGCTGGAGGTACTTAAGATGACAGTTTACGGAACACCTGCTACCTGGGAACTAACCCGGAACCTAAGTTGAATTAACCATAGTAATAGTTAAGTCCTTGTTATAAGGGTTATAATAGGCATAAACTTAGATAAATTGACTTAGCCAGGATTTATCTAAATAAATAAATCCTAAAACCAATAGAACACTTTAGTGGGAGGAAAAGTATAAAAAACGAGATGTTAATATCAAGTTTTTACTCTCACGTCCCCCTTTGTTCACATCGTGAGATTCATGCTCGACTTCGTGTCGCCCTAGGCGCGGCCTCCCTTCGAAAAGTGTTTGCATGGGTCAATACCAAGGTGGATGGGGAAAGTGTTCATAGTAAGTCGGAGAAGGACGCGTGTCAACGTATCCTACGGTCTCCACCCCTAGGTTGCACCGTGATATTCTTATGATTTGCCTGCAGGTCGTCTTGGCGCGACCATCCCTTCGGAGGGTCTGATCATAGGTTTCAGAACACCACAAACTCCAGAAATGTATAAGATCTCTTAGGTTAATTACCAACAGTTGTCTTTCCCTTCGGTAGTCTGTTGGTCCGTACCTCTGGGATTTGAAAGTTGGAGGGTTACACTTACGGGGATAAGTTAAATATGTTTGACAAATCCTTTAAAGCTCGACTTGTGGCAAAGGGTTATACCCAAAGGGAGGGGGTAGACTATAAGGAAACCTTGGAGGGGGTAGACTATGAAGAAACCTTCTCTCCTGTTGCCATGTTAAAATCGATAAGGATACTCTTGTTCATTGCCACTTTTTATTATTATGAAATTTGGCAAATGGATGTCAAGATCGCCTTTCTGAATGACAATCTTCAGGAGAGCATCTTGATGTCTCAACTAGAGGGGTTCATTGCTCAAGGTCAAGAGCAAAAGGTTTGCAAGCTTAATCGATCCACTTATGGATTGAAACAAGCATCTCGATCTTGGAACATAAGGTTTGATACTGCGATCAAATCTTATGGCTTTGACAAGAATGTTGATGAGCCTTATGTCTAAAGAAAAATCATCAACAGTTTAGTAACTTTTCTTGTGTTATATGTGGATGATATCCAATCCAGGGTTAGACCACTAGATTGCTATGAAAAATATCCTCAAGTATCTTCGGAGAACGAGAGACTATATGCTTGTGTAAGGTGCGAAGGATTTGATCCTTACAGGATACACAAATTCTGACTTTCAGACTGATAGGGGTTCTTGATGCGCGATTTGCTTACCACAAGTGTACGGGTCAGTAATAATATATTGATTGTGAAATCGAATGTCGTCCTATGGATTGGTTTTTAATTTAAATTAAGTACCATGAATAATCTTGTCCAATTTTATTTAGAGAGCAAAACTTAATGACAAAGATATATCTAAAGACAAAAAGCATAAAAAAGGGAAAAATACACTTTTGGTCCTTCAAACTCGACAATTTAGTCCCTGAGGTTTGGATTTCATTACATTATTGGTCCCTTCGTCTATTTTTCTGTTAAATCCTAACAGATTGCTGATGTGGCCCAATATTTTAAAAAAACAATTATTTTTTTATTTTTAAAATAGAATAATAATAAATTAATTTAAAATATATTTTTTTAATTATTTTTTTATTTCTCCCCTCCCTCATTCTTCTTCAACTCTAGCCACCGCCCGCCAACAACCGCCGCCGACCAATTTTTTTTTCTTCCTCTTTCTTTTTTTTCCCTCTTCCTCTCTTCCCTTTCTTTTTTCACTGTTTAAAAAAAATGAAGAGGGAAACCTTCTTCGAATCCGACAATGGAGGGAAAATCCAGCTTAAAACGAGGGCGACGACGCGAAACCCAAATTTGGCGTGCAGCGACGAAGGGAGTTGACGAATCTATGGTCGTCGTTCGCGCGTATTTACGGTGGCGAGACCCACGCAGGTTTAGTTCCAACAAGGATCTACAGTGTGGTTGGTAGTGACACGGATCTATGACGTGGTTCAGATCCAACAGGGATCTATGGTGTGGTTCCCTTTCTTTTGTCATTTTAGTCCCTTCTCCTCTTCCTGTTTCAGATCGCCACGAACCCAAAGGAGCTCGTAAATGCCGGCTTCAAAATCACCACCGAATCTCGATCTGAGTGGGTTTCGTTTCAAACCGACTCCTTTGATTCCGAGAGAAAAAGAGGGAGACTCACGAAAGGAATCGCGTCGTGAGACTCGCGAGCAGCCTCACAAACCGAGCTTTCTCCCTTCCTCTTCAGTTTTCTCGTTTCTGCGAGCAGACCCACATTTTCTCCCGTCCGTTTTCTTCCGTTTGGGCTCTTGGTTCCAGATCTAGAACGAGATTCGAAGGGGTTTGGCTTCTTGGCTTCCAGATCTGAAATGGGAAGACTTTTCCGGCAATTTTCGACGGGATCCGCAGTGTTATCCGAGCACCGGCTCGGCGACGTTGCTCACGTTGAGGATTTTACAGCGGCAGCGACTGACGGTGACCGACGACGGCCACCGGTGACGGCGGCGGCTGTTGCTAGAGGTGAGTTGGTTAGGGTTTGA

mRNA sequence

ATGCTTATCAACTCGAGCTGCAGTCCTGAGGAGCTTGGGTTGGTTGTTGTAACCTGCTGGACGATTTGGATGTATAGAAACAAAAAAGCGCACGGTGAATCCTTACCCCCAATGGATAAAAGAAGTCTATGGATCTCGAATTACCTGATAAAGTTTTCAGAGGCAAATGCGAAAAGGTCGCCAAAAAGAAGTATTCCTGTAGCGCCCGCCTCTTCTTCCTCAAATAGCATCTGGATTCCGCCACCTCCTGATTTCTGGAAAGTGAACGTTGATGCTGCATGGAGCTCCTCCCTCCCTAAGACGGGAATCAGAATTGCATTTAGGAAATCTGATGGGAGCTTGGAAGGGGCTAGAGTACGTTTTCTTGACCTAAATTTCGTAGCCCCTGAAGCAGAGTTGAGAGCTATCCTAGAGGGCGTTCGTCCGGCGGTGGATTTAGGGTATCGAAGTGTGATAATAGAATCCGACTGTTTGATGGCTGTAAATTTCTTAAACAAAACCACGAGGCCTAGAGTAGTTTGGATGGGCTTATTGAGAGTATCTGGGCCCTTGGCCCAAAATTCCGTGAGATTCATTGGGTCTGTTCTTTGGTCGATCGCAGATATTCCAAGAAATCGCTCTCAGACGCAACAGCGTCTTGACGCTGTGTCGATTCCCGGCCACATGTGGAAAACTGACAGCGTCGAGTTTTTAGCAATGGCGGCCAAGGTTTCGACAGCTCCGATTCATGCTCGACTTCGTGTCGCCCTAGGCGCGGCCTCCCTTCGAAAAGTGTTTGCATGGGTCAATACCAAGGTGGATGGGGAAAGTGTTCATAGTCGTCTTGGCGCGACCATCCCTTCGGAGGGTCTGATCATAGATCTAGAACGAGATTCGAAGGGGTTTGGCTTCTTGGCTTCCAGATCTGAAATGGGAAGACTTTTCCGGCAATTTTCGACGGGATCCGCAGTGTTATCCGAGCACCGGCTCGGCGACGTTGCTCACGTTGAGGATTTTACAGCGGCAGCGACTGACGGTGACCGACGACGGCCACCGGTGACGGCGGCGGCTGTTGCTAGAGGTGAGTTGGTTAGGGTTTGA

Coding sequence (CDS)

ATGCTTATCAACTCGAGCTGCAGTCCTGAGGAGCTTGGGTTGGTTGTTGTAACCTGCTGGACGATTTGGATGTATAGAAACAAAAAAGCGCACGGTGAATCCTTACCCCCAATGGATAAAAGAAGTCTATGGATCTCGAATTACCTGATAAAGTTTTCAGAGGCAAATGCGAAAAGGTCGCCAAAAAGAAGTATTCCTGTAGCGCCCGCCTCTTCTTCCTCAAATAGCATCTGGATTCCGCCACCTCCTGATTTCTGGAAAGTGAACGTTGATGCTGCATGGAGCTCCTCCCTCCCTAAGACGGGAATCAGAATTGCATTTAGGAAATCTGATGGGAGCTTGGAAGGGGCTAGAGTACGTTTTCTTGACCTAAATTTCGTAGCCCCTGAAGCAGAGTTGAGAGCTATCCTAGAGGGCGTTCGTCCGGCGGTGGATTTAGGGTATCGAAGTGTGATAATAGAATCCGACTGTTTGATGGCTGTAAATTTCTTAAACAAAACCACGAGGCCTAGAGTAGTTTGGATGGGCTTATTGAGAGTATCTGGGCCCTTGGCCCAAAATTCCGTGAGATTCATTGGGTCTGTTCTTTGGTCGATCGCAGATATTCCAAGAAATCGCTCTCAGACGCAACAGCGTCTTGACGCTGTGTCGATTCCCGGCCACATGTGGAAAACTGACAGCGTCGAGTTTTTAGCAATGGCGGCCAAGGTTTCGACAGCTCCGATTCATGCTCGACTTCGTGTCGCCCTAGGCGCGGCCTCCCTTCGAAAAGTGTTTGCATGGGTCAATACCAAGGTGGATGGGGAAAGTGTTCATAGTCGTCTTGGCGCGACCATCCCTTCGGAGGGTCTGATCATAGATCTAGAACGAGATTCGAAGGGGTTTGGCTTCTTGGCTTCCAGATCTGAAATGGGAAGACTTTTCCGGCAATTTTCGACGGGATCCGCAGTGTTATCCGAGCACCGGCTCGGCGACGTTGCTCACGTTGAGGATTTTACAGCGGCAGCGACTGACGGTGACCGACGACGGCCACCGGTGACGGCGGCGGCTGTTGCTAGAGGTGAGTTGGTTAGGGTTTGA

Protein sequence

MLINSSCSPEELGLVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEANAKRSPKRSIPVAPASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLDLNFVAPEAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFLNKTTRPRVVWMGLLRVSGPLAQNSVRFIGSVLWSIADIPRNRSQTQQRLDAVSIPGHMWKTDSVEFLAMAAKVSTAPIHARLRVALGAASLRKVFAWVNTKVDGESVHSRLGATIPSEGLIIDLERDSKGFGFLASRSEMGRLFRQFSTGSAVLSEHRLGDVAHVEDFTAAATDGDRRRPPVTAAAVARGELVRV

Homology

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BLAST of Spg029561 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 8.3e-15
Identity = 58/166 (34.94%), Postives = 84/166 (50.60%), Query Frame = 0


Query: 1   MLINSSCSPEELGLVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEA--NAK 60
           +L+    +P++  L   T W IW  RN  AHG S+     R  WIS+Y   +S+A  N +
Sbjct: 41  LLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQENKR 100

Query: 61  RSPKRSIPVAPASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGAR 120
            SP++S  V P S      W+PP     KVN DAA  S+   TG+ +  R   G L  A+
Sbjct: 101 ISPQQS-SVPPPSCR----WLPPRDSAMKVNSDAACRST--STGLGLIIRDHFGVLLVAK 160

Query: 121 VRFLDLNFVAPEAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFL 165
             FL +      AE+R ILE ++ A    Y  +++ESDC  A+  +
Sbjct: 161 SMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLV 199

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BLAST of Spg029561 vs. NCBI nr
Match: XP_030964645.1 (uncharacterized protein LOC115985893 [Quercus lobata])

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-14
Identity = 53/161 (32.92%), Postives = 78/161 (48.45%), Query Frame = 0


Query: 10   EELGLVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEANAKRSPKRSIPVAP 69
            E++GL+V+T W IW  RN+  HG++  P    + W  +YL  +  AN    P +      
Sbjct: 898  EDIGLMVMTAWGIWTNRNEVRHGKNRKPAAVLAKWTKSYLEDYLMANHSTRPYK------ 957

Query: 70   ASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLDLNFVAP 129
               S+   W  P P ++K N+D A  S   + G+ +  R   G++  A  R L     A 
Sbjct: 958  --ESTEVTWQLPKPPWFKANMDGAVFSQQKEAGVGVVIRDHFGAVVAAVSRKLKAPLGAL 1017

Query: 130  EAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFLNKTTRP 171
            E E +A+ E V  A D+G R  I ESD L  VN + + T P
Sbjct: 1018 EVEAKAMEEAVNFAWDMGIRECIFESDSLTVVNAMLRLTDP 1050

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BLAST of Spg029561 vs. NCBI nr
Match: XP_012833643.1 (PREDICTED: uncharacterized protein LOC105954520 [Erythranthe guttata])

HSP 1 Score: 89.0 bits (219), Expect = 9.2e-14
Identity = 53/163 (32.52%), Postives = 77/163 (47.24%), Query Frame = 0


Query: 3   INSSCSPEELGLVVVTCWTIWMYRNKKAHGE-SLPPMDKRSLWISNYLIKFSEANAKRSP 62
           ++ S S +E  L ++  W  W  RNK+  GE  +  MD+   W   YL  F  A    + 
Sbjct: 43  LHQSLSADEFHLAIIIAWKAWDIRNKEFKGEKGVAIMDEVVQWSRAYLDAFKLAQLPSNT 102

Query: 63  KRSIPVAPASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRF 122
           + S+P+        S+W  PP    K+N DAA         + I  R +DG   G RV  
Sbjct: 103 QLSLPLP-------SVWRTPPVGVVKINFDAALHRGKNCYSVAIVARNTDGKSIGWRVDT 162

Query: 123 LDLNFVAPEAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFL 165
           +D + +A E E  A L  V+ A D G+ S+I+E DCL  +  L
Sbjct: 163 IDGSLLAVECEAMAALAAVKMAKDFGWTSIIVEGDCLQVIQAL 198

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BLAST of Spg029561 vs. NCBI nr
Match: XP_023880772.1 (uncharacterized protein LOC111993138 [Quercus suber])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-13
Identity = 64/236 (27.12%), Postives = 105/236 (44.49%), Query Frame = 0


Query: 14  LVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEANAKRSPKRSIPVAPASSS 73
           L   T W +W  RN   +G       + +  +  YL +F   N+    K S P AP    
Sbjct: 195 LFAATVWGLWNQRNTVRYGGQRKTAHRLTRDMEEYLREFRHENSPPC-KPSRPFAPT--- 254

Query: 74  SNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLDLNFVAPEAEL 133
               W PP   ++K N+D A S      GI +  R ++G + GA  + L+L   A E E 
Sbjct: 255 ----WTPPKQGWYKANMDGAVSKERDCCGIGVVIRNAEGQIMGAMSKRLELPLKALETEA 314

Query: 134 RAILEGVRPAVDLGYRSVIIESDCLMAVNFLNKTTRPRVVWMGLLRVSGPLAQNSVRFIG 193
            AI EG++ A DLG R V+ ESD L  ++ L+  T P   W     +   + ++ +    
Sbjct: 315 MAIQEGIQLAWDLGLRDVVFESDSLTVISALSSPTPP--PW----SIQKVIEESKLSLGC 374

Query: 194 SVLWSIADIPRNRSQTQQRL--DAVSI-PGHMWKTDSVEFLAMAAKVSTAPIHARL 247
              WS   + ++R+     +  +A+++    +W  D   F+AM      + ++A L
Sbjct: 375 FNTWSAVHVRQSRNMAAHLMAKNAITVLDSVVWVEDIPPFIAMQVSKDVSSLNADL 416

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BLAST of Spg029561 vs. NCBI nr
Match: XP_023897447.1 (uncharacterized protein LOC112009345 [Quercus suber])

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-13
Identity = 50/161 (31.06%), Postives = 76/161 (47.20%), Query Frame = 0


Query: 4    NSSCSPEELGLVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEANAKRSPKR 63
            + S   E++ LVV   W  W  RN+  HG      +    W++ YL+++S A        
Sbjct: 914  HKSFDEEKIILVVTVAWAFWCNRNEIRHGAEKKSPEAIVQWVNRYLLEYSAAT------E 973

Query: 64   SIPVAPASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLD 123
            S+P      S    W PPPP   KVNVD A + +L   G+    R   G +  A  R + 
Sbjct: 974  SVPAVREEVSVT--WNPPPPSILKVNVDGATTKNLNFVGVGAVVRDEQGRVVAAMSRKIP 1033

Query: 124  LNFVAPEAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFL 165
                  E E++A   G++ A D+GY+++I+E D L+ V  L
Sbjct: 1034 APLGPLEVEVKAFEAGLQLAKDMGYQNIILEGDSLIIVRAL 1066

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BLAST of Spg029561 vs. ExPASy TrEMBL
Match: A0A7N2RE64 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15
Identity = 54/161 (33.54%), Postives = 77/161 (47.83%), Query Frame = 0


Query: 10  EELGLVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEANAKRSPKRSIPVAP 69
           E++GL+V T W IW  RN+  HG+S  P      W    L  F  AN    P +  PV  
Sbjct: 2   EDVGLMVTTAWGIWTNRNEVRHGKSRKPASVLVGWTKELLENFVMANHSTRPFKD-PV-- 61

Query: 70  ASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLDLNFVAP 129
                 +IW PP P ++K N + A  +   +TGI +  R   G +  A  + +     A 
Sbjct: 62  -----EAIWQPPKPSWYKANTNGAVYTQQKETGIGVVIRDHHGEVVAALSKRIKAPLGAV 121

Query: 130 EAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFLNKTTRP 171
           E E +A+ EGVR A ++G R  + ESD L  VN + +   P
Sbjct: 122 EVEAKAMEEGVRFAWEMGIRDCLFESDSLTVVNAMQRRIEP 154

[Close]

BLAST of Spg029561 vs. ExPASy TrEMBL
Match: A0A7N2LJB8 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-14
Identity = 53/161 (32.92%), Postives = 78/161 (48.45%), Query Frame = 0


Query: 10  EELGLVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEANAKRSPKRSIPVAP 69
           E++GL+V+T W IW  RN+  HG++  P    + W  +YL  +  AN    P +      
Sbjct: 23  EDIGLMVMTAWGIWTNRNEVRHGKNRKPAAVLAKWTKSYLEDYLMANHSTRPYK------ 82

Query: 70  ASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLDLNFVAP 129
              S+   W  P P ++K N+D A  S   + G+ +  R   G++  A  R L     A 
Sbjct: 83  --ESTEVTWQLPKPPWFKANMDGAVFSQQKEAGVGVVIRDHFGAVVAAVSRKLKAPLGAL 142

Query: 130 EAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFLNKTTRP 171
           E E +A+ E V  A D+G R  I ESD L  VN + + T P
Sbjct: 143 EVEAKAMEEAVNFAWDMGIRECIFESDSLTVVNAMLRLTDP 175

[Close]

BLAST of Spg029561 vs. ExPASy TrEMBL
Match: A0A7N2N0M5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-13
Identity = 47/170 (27.65%), Postives = 79/170 (46.47%), Query Frame = 0


Query: 1   MLINSSCSPEELGLVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEANAKRS 60
           M+I        + +VV   W +W  RN    G       + + W + YL +++ A     
Sbjct: 73  MIILDQVEEARVAMVVTVAWVLWCNRNVTRTGGKKKSGREMAHWAATYLAEYTTATELPG 132

Query: 61  PKRSIPVAPASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVR 120
           P     V        S+W PPP +++KVNVD A        G+ +  + S+G +E A  +
Sbjct: 133 PPTPTEVL------RSLWEPPPGNWYKVNVDGALLIEHKSAGVSVIIKDSEGRVEAALSK 192

Query: 121 FLDLNFVAPEAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFLNKTTRP 171
            L+++  A EAE +A   G+  A D+G R +I+E D ++    L+  + P
Sbjct: 193 RLEVSLGALEAEAKAFETGLLFAKDIGVREIILEGDSMIMYRALSGLSNP 236

[Close]

BLAST of Spg029561 vs. ExPASy TrEMBL
Match: A0A7N2LNV1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-13
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 2   LINSSCSPEELGLVVVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEANAKRSP 61
           ++ S    + + L+    W +W  RN+  +G         S W SNYL+++  A A+ +P
Sbjct: 84  MLLSDVGDDHVALIATIAWALWHNRNETRYGGVQKFGQHLSRWASNYLLEYKAAVAQNNP 143

Query: 62  KRSIPVAPASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRF 121
              +P           W PP    +K+NVD A        G+ +  +  +G LE A  + 
Sbjct: 144 AAPLP------QHGVAWSPPRGGHFKINVDVAIFLKQKSVGVGVVIKDEEGRLEAALSKK 203

Query: 122 LDLNFVAPEAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFLNKTTRP 171
           +     A EAE RA   G+  A D+G R+V++E D L+  N L   + P
Sbjct: 204 IHAPLGAVEAEARAFEMGLLFARDIGVRNVVLEGDSLVVYNALCNISSP 246

[Close]

BLAST of Spg029561 vs. ExPASy TrEMBL
Match: Q53JP3 (Retrotransposon protein, putative, unclassified, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g25050 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-13
Identity = 53/182 (29.12%), Postives = 88/182 (48.35%), Query Frame = 0


Query: 16   VVTCWTIWMYRNKKAHGESLPPMDKRSLWISNYLIKFSEAN-------------AKRSPK 75
            ++T W +W  RN+  HG+  PP      ++ +Y+    + +             A  SP+
Sbjct: 827  LMTLWRVWFIRNEIIHGKEPPPATVSKRFLLSYVRSLLDLSQHPDGSLLKGKHVASSSPQ 886

Query: 76   RSIPVAPASSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFL 135
             +  V P +  +++ WI P P + K+N+D ++ +SL + GI +  R S GS+  +   F+
Sbjct: 887  TNGMVKPVNVQASAPWIKPQPGWMKLNIDGSFDASLNQGGIGVIPRNSTGSVIFSACGFI 946

Query: 136  DLNFVAPEAELRAILEGVRPAVDLGYRSVIIESDCLMAVNFLNKTTRPRVVWMGLLRVSG 185
            D    A EAEL A+ E +  A+      + IE+DCL AVN +      R     L+R  G
Sbjct: 947  DRCNCALEAELLALKESIILALHWTLLPICIETDCLEAVNLIQSARSVRSELAHLIRDIG 1006

[Close]

BLAST of Spg029561 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-07
Identity = 42/155 (27.10%), Postives = 59/155 (38.06%), Query Frame = 0


Query: 14  LVVVTCWTIWMYRNK---KAHGESLPPMDKRSLWISNYLIKFSEANAKRSPKRSIPVAPA 73
           LV    W +W  RN+   K      P + +R+      +  F E + +R  +        
Sbjct: 76  LVPWLLWRLWKSRNELMFKGKEYDAPEVLRRA------MEDFEEWSTRRELEGKASGPQV 135

Query: 74  SSSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLDLNFVAPE 133
             + +  W  PP  + K N DA W    P+ GI    R   G +     R L       E
Sbjct: 136 ERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLE 195

Query: 134 AELRAILEGVRPAVDLGYRSVIIESDCLMAVNFLN 166
           AEL A+   V       Y+ +I ESD    VN LN
Sbjct: 196 AELEALRWAVLTMSRFNYKRIIFESDAQALVNLLN 224

[Close]

BLAST of Spg029561 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.2e-05
Identity = 31/93 (33.33%), Postives = 39/93 (41.94%), Query Frame = 0


Query: 73  SSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLDLNFVAPEAE 132
           SS   W PPP  + K N DA W+    + GI    R   G ++    R L       EAE
Sbjct: 415 SSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE 474

Query: 133 LRAILEGVRPAVDLGYRSVIIESDCLMAVNFLN 166
           L A+   V       Y  VI ESD  + +  LN
Sbjct: 475 LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILN 507

[Close]

BLAST of Spg029561 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 4.1e-04
Identity = 30/102 (29.41%), Postives = 44/102 (43.14%), Query Frame = 0


Query: 72  SSSNSIWIPPPPDFWKVNVDAAWSSSLPKTGIRIAFRKSDGSLEGARVRFLDLNFVAPEA 131
           SS    W  P  ++ K N D +  +    +G+R   R S G+                EA
Sbjct: 24  SSRTDKWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQGRQTIKEA 83

Query: 132 ELRAILEGVRPAVDLGYRSVIIESDCLMAVNFL-NKTTRPRV 173
           E  A++  ++ A DLGYR V  E D +     + NK T PR+
Sbjct: 84  ECTALIWAIQCAWDLGYRRVEFEGDNITVNRLIRNKETNPRL 125

The following BLAST results are available for this feature:

BLAST of Spg029561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131661.1	8.3e-15	34.94	uncharacterized protein LOC111004786 [Momordica charantia]	[more]
XP_030964645.1	4.1e-14	32.92	uncharacterized protein LOC115985893 [Quercus lobata]	[more]
XP_012833643.1	9.2e-14	32.52	PREDICTED: uncharacterized protein LOC105954520 [Erythranthe guttata]	[more]
XP_023880772.1	1.2e-13	27.12	uncharacterized protein LOC111993138 [Quercus suber]	[more]
XP_023897447.1	1.6e-13	31.06	uncharacterized protein LOC112009345 [Quercus suber]	[more]

BLAST of Spg029561 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2RE64	3.1e-15	33.54	RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2LJB8	2.0e-14	32.92	RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2N0M5	3.8e-13	27.65	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2LNV1	3.8e-13	28.40	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
Q53JP3	6.5e-13	29.12	Retrotransposon protein, putative, unclassified, expressed OS=Oryza sativa subsp...	[more]

BLAST of Spg029561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	5.2e-07	27.10	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G29090.1	2.2e-05	33.33	Ribonuclease H-like superfamily protein	[more]
AT3G23320.1	4.1e-04	29.41	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 85..217 e-value: 2.0E-7 score: 33.1
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 89..169 e-value: 4.7E-12 score: 45.8
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 71..184
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 88..167 e-value: 3.38582E-12 score: 60.7908
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 84..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029561.1	Spg029561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity