Spg029558 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029558
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionexosome complex component CSL4
Locationscaffold2: 22003629 .. 22006575 (-)
RNA-Seq ExpressionSpg029558
SyntenySpg029558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTCGGACGACGGCGGCGGAGGCTTAAGCAGGGAACGGCGGCGCCGGCGACTGCTGTGGAAGCGGCGGCAGTAAGGGGCTAGGGTTTAAGAAAAATAGGGTTTTATTTTTTCTTTCTATTTTTGCTCTGATACCATGTGCAAAAATAATTTCACTGGAATAGAATATTTTTCTATTCAATCATCATAGAGATATATATTAGATACAAGAGAATCCTCCTTAAGAAGAAGAAGAAGCCTAATACAAAGAAGGAAAGAATCACACAAATAAATACAATATAATTACAATTAATAAGACTAATTAAGGAAAATATCAAACATAAACCAACAGTTTGTTATAAATAGAGTGGTGTTCTTTTGGTCTCTTTGGGGTGAAAGAAATAGTAGGATCTTCAGAGATAAGGCCTCCAACTTCACTACTTTTATAGATTTGATTGTTTTTAATTCTCTTTATTGGTGTAAATGTAAACACCCGTTCTCTGATTATAGCCTTTCGTCTTTAATTGCCAATTGGAAATCTTTTATGTAATTCACCTTTTGGTGTTTGGAGTGTAAACTCCTATTTCATTCAATCAATGAAATTGTTTCCCTTCTCAAAAAAAAAAAAAAAAAAAATAGTGGTTAGAAAGGATGAAGGTTGGAATTATGTAGTGGCTTTAGTCTTGAATAGTTGGGGAGGTTCCAAGTACCTTGAATACTTGTGGAGTTATACTGTAATCCTATTTGGTTTCTATCACATCAATGGACAGATGGGCAAAGATTGATAACGAGCTACTATTGCCATCTGAATCTCCAACCATTCCCTTGGGGAGTTACATGAATGTGGGGTGTGCCAAACAAGCAAGGTATTTTTGGAAAAAATAAGAAAATAGAAGGAAGAGATGGAAGGAAATCATTCACGTTACATTCTTTTCAGAGGTGTAAATTTGCTTATAATGATGGAAGTGGAAAACATGAAATGTTTTTGTTTTTGGTATTTCTTCTTGTTACAATGGTGTAATTAAATAATTGAATCAACTTAAAATGGAAAAACTCTTCCTTATCTAAAGGAGGAATGCTATGCTTATCCGATCCATTTTTGTCATGAGAAAGCCTTTGTCTGCTTTGTCAATCAGTGTTATGTTATCTGTCTTTTATTTGAAATGTCTTTTAATCTATTCTGTTTGGGAAATATTTTTACATTAGATTATCATTCATGCTTTCTGTCTTAAATCGTTTCTGTAGGCAACAAGATGTCCGGGCAACGGAGATTGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCTTGAATTCCCTCTGTTGCCTGTCCATAAAGCATGCAAAAGGACCCATTTAGTACATTTCTGGTCTAGAATTCTTCTCCATTGTTTCTTGTTCAAAAAAAAGAAAAAAAAAATAATAAAATAAAATAAAAAACTTCTCCACTTATCCCATAAACTAGAATCATAAGAAACCAACTATATATATCAGTTGTTTGTCAAATGATAAGAATGATCCCATGGGGATGTGGCCAAAAGTAGGAAAATTAAGAAATTGCATCATGATAATTGAAATGTTACCAGGAGTCCATGCATATCATTCTCAATTTTTCACTTGCAAATTACATTTCGATATCTTTCCTACTCAAGGTTTCTAATAGGAAACAGGAATTAGAAAGCAAGAAACTTTGTTTTCTGGATGAGACAATTTTATTTCATCTTTTTGCTGTGGGATTTAGTTCTTCATTGCTCAAACTAAAGAAATCTTCTTGGAGGTTTTCATTTGAGTGTAATTCTTACCACAAATTTCCTTAACCAAAGTTCTCTCTGAAAGCTTTCTCTCGGAGATGCAAGGGCCTATCATCTATCAACTGCAAAAAACGAACTCGGTGTCGTCTCTGCAGAAAGTTCAGCAGGTAAAGACTAGGGTACTTCAGTGAAACCTAAAGAGTTTATCGTTTCCTTTATGACATTTAAAGTAGTCTCTCATTAAAAAGTAGTCAATAGTGTTGTATGGGATATATGTTTTCTCTATTATTATCTTTCAAATTCAAAGAAATAGGGCAGCAAATCGATCATTAAAAGTGGAGTTCGCCTTGATCATGAAAGAGCTTGAGCCATAGATGTCCAACTATTTGAGCATATGCATATGCATATGACCTTAAATGTTCCAAAAAGAAAAAACAAATCAATCAAAAAATATTAATTTCAACGGTTATTCAAGTTTAAGGTTCAATTTGATGAAATGAAGACATTAATTAAGTATAGCAGTATAACGTAAATTCTTTAAAGCATTTTAATAGTTCACTTGGAATGTTCTGTGATTACTTGATTATGAATGAATATTGAGATCTCCATAAAGTAGGCCTCTTATTCAAAATTCCAACTTTTACTATGATCTAATACATTCTATTTACCTTGGACTTGCTATACTTGCTTTTTCGAATTATATGAAGCTAGTCTTGTGTACTTAGTTCCTCATTTGAAAAGACTTGGTTGTAATCCTTTATTATGGATTGAATGTTATTTTAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCATTAACAGGACAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGATCATGACTTGCTTAACTAGGACAATGTTATTTCTTGTTCTCTCTTCCCCCTCTATCATCTTATTTTTCTTTTTTGTTTCCGATAATCGTTTGTCATTTATAATGTCGGGTATCGAATATAGAAAATTGAACATTGGATTATGGTAATTGCATATTTTAGGATTGAGGGGTCCTTAATTTTCAGATGTTATTGTTGATTCAGAATAGGAGGAAGAGAGAGGATTACTATTGTAACATTTGCTTTGTATGATTGAAATTAGATGAGTAGTTTACCCATCTGTAATATATAGAGGAAGATTTTGTTTCTGTG

mRNA sequence

ATGTGGTCGGACGACGGCGGCGGAGGCTTAAGCAGGGAACGGCGGCGCCGGCGACTGCTGTGGAAGCGGCGGCAATGGGCAAAGATTGATAACGAGCTACTATTGCCATCTGAATCTCCAACCATTCCCTTGGGGAGTTACATGAATGTGGGGTGTGCCAAACAAGCAAGGCAACAAGATGTCCGGGCAACGGAGATTGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCTTGAATTCCCTCTGTTGCCTGTCCATAAAGCATGCAAAAGGACCCATTTACTTTCTCTCGGAGATGCAAGGGCCTATCATCTATCAACTGCAAAAAACGAACTCGGTGTCGTCTCTGCAGAAAGTTCAGCAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCATTAACAGGACAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGATCATGA

Coding sequence (CDS)

ATGTGGTCGGACGACGGCGGCGGAGGCTTAAGCAGGGAACGGCGGCGCCGGCGACTGCTGTGGAAGCGGCGGCAATGGGCAAAGATTGATAACGAGCTACTATTGCCATCTGAATCTCCAACCATTCCCTTGGGGAGTTACATGAATGTGGGGTGTGCCAAACAAGCAAGGCAACAAGATGTCCGGGCAACGGAGATTGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCTTGAATTCCCTCTGTTGCCTGTCCATAAAGCATGCAAAAGGACCCATTTACTTTCTCTCGGAGATGCAAGGGCCTATCATCTATCAACTGCAAAAAACGAACTCGGTGTCGTCTCTGCAGAAAGTTCAGCAGGTGCAGTAATGGTTCCCATAAGTTGGACAGAAATGCAGTGTCCATTAACAGGACAAATTCAGCAAAGAAAAGTTGCCAAAGTTGGAGGATCATGA

Protein sequence

MWSDDGGGGLSRERRRRRLLWKRRQWAKIDNELLLPSESPTIPLGSYMNVGCAKQARQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS
Homology
[Close]
BLAST of Spg029558 vs. NCBI nr
Match: KAG6750711.1 (hypothetical protein POTOM_045220 [Populus tomentosa])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 88/114 (77.19%), Postives = 96/114 (84.21%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLL------PVHKAC--KRTHLLS 116
           RQQDVRATEIDKVDMHLSFRPGDIV+ALVVSF+ E  +L       +H  C  K  + LS
Sbjct: 114 RQQDVRATEIDKVDMHLSFRPGDIVRALVVSFMFEVLILFCYKDHCIHMNCGVKCHNFLS 173

Query: 117 LGDARAYHLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVG 163
           LGDARAY+LSTAKNELGVVSAES+AGA MVPISWTEMQCPLTGQI+QRKVAKVG
Sbjct: 174 LGDARAYYLSTAKNELGVVSAESAAGATMVPISWTEMQCPLTGQIEQRKVAKVG 227

[Close]
BLAST of Spg029558 vs. NCBI nr
Match: XP_022974279.1 (exosome complex component CSL4 [Cucurbita maxima])

HSP 1 Score: 158.7 bits (400), Expect = 4.3e-35
Identity = 86/108 (79.63%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYH
Sbjct: 115 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDARAYH 174

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 165
           LSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS
Sbjct: 175 LSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 201

[Close]
BLAST of Spg029558 vs. NCBI nr
Match: KAG7020862.1 (Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 4.3e-35
Identity = 86/108 (79.63%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYH
Sbjct: 111 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDARAYH 170

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 165
           LSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS
Sbjct: 171 LSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 197

[Close]
BLAST of Spg029558 vs. NCBI nr
Match: XP_023530831.1 (exosome complex component CSL4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 4.3e-35
Identity = 86/108 (79.63%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYH
Sbjct: 113 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDARAYH 172

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 165
           LSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS
Sbjct: 173 LSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 199

[Close]
BLAST of Spg029558 vs. NCBI nr
Match: XP_022934020.1 (exosome complex component CSL4 [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-35
Identity = 85/108 (78.70%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYH
Sbjct: 111 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDARAYH 170

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 165
           LSTAKNELGVVSAES+AGAVM+PISWTEMQCPLTGQIQQRKVAKVGGS
Sbjct: 171 LSTAKNELGVVSAESTAGAVMIPISWTEMQCPLTGQIQQRKVAKVGGS 197

[Close]
BLAST of Spg029558 vs. ExPASy Swiss-Prot
Match: Q9Y3B2 (Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-18
Identity = 55/106 (51.89%), Postives = 68/106 (64.15%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARA-Y 116
           R++DVRATE DKV+++ SFRPGDIV A V+                     SLGDA++ Y
Sbjct: 104 RKEDVRATEKDKVEIYKSFRPGDIVLAKVI---------------------SLGDAQSNY 163

Query: 117 HLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKV 162
            L+TA+NELGVV A S +G  MVPISW EMQCP T   + RKVA+V
Sbjct: 164 LLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARV 188

[Close]
BLAST of Spg029558 vs. ExPASy Swiss-Prot
Match: Q9DAA6 (Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-18
Identity = 54/106 (50.94%), Postives = 68/106 (64.15%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARA-Y 116
           R++D+RATE DKV+++ SFRPGDIV A V+                     SLGDA++ Y
Sbjct: 104 RKEDIRATEKDKVEIYKSFRPGDIVLAKVI---------------------SLGDAQSNY 163

Query: 117 HLSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKV 162
            L+TA+NELGVV A S +G  MVPISW EMQCP T   + RKVA+V
Sbjct: 164 LLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKVARV 188

[Close]
BLAST of Spg029558 vs. ExPASy Swiss-Prot
Match: P53859 (Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CSL4 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           R QDVR+T+ D+V +   F+PGDIV+A V                     LSLGD   Y+
Sbjct: 206 RSQDVRSTDRDRVKVIECFKPGDIVRAQV---------------------LSLGDGTNYY 265

Query: 117 LSTAKNELGVVSAESS--AGAVMVPISWTEMQCPLTGQIQQRKVAK 161
           L+TA+N+LGVV A ++  AG +M    W  M  P+TG  ++RK AK
Sbjct: 266 LTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290

[Close]
BLAST of Spg029558 vs. ExPASy Swiss-Prot
Match: O59821 (Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=csl4 PE=3 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-11
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 59  QDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYHLS 118
           QD+RATE +KV +  SFRPGDIV+ALV+                     SLGD  +Y L+
Sbjct: 96  QDIRATEKNKVKVQNSFRPGDIVRALVI---------------------SLGDGSSYFLT 155

Query: 119 TAKNELGVVSAESS-AGAVMVPISWTEMQCPLTGQIQQRKVAK 161
           TA+N+LGV+ A+SS  G  M P+ +  MQ   +G  + RK AK
Sbjct: 156 TARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SGYTEMRKCAK 176

[Close]
BLAST of Spg029558 vs. ExPASy TrEMBL
Match: A0A6J1IH52 (exosome complex component CSL4 OS=Cucurbita maxima OX=3661 GN=LOC111472912 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 86/108 (79.63%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYH
Sbjct: 115 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDARAYH 174

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 165
           LSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS
Sbjct: 175 LSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 201

[Close]
BLAST of Spg029558 vs. ExPASy TrEMBL
Match: A0A6J1F6G8 (exosome complex component CSL4 OS=Cucurbita moschata OX=3662 GN=LOC111441251 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35
Identity = 85/108 (78.70%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYH
Sbjct: 111 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDARAYH 170

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGGS 165
           LSTAKNELGVVSAES+AGAVM+PISWTEMQCPLTGQIQQRKVAKVGGS
Sbjct: 171 LSTAKNELGVVSAESTAGAVMIPISWTEMQCPLTGQIQQRKVAKVGGS 197

[Close]
BLAST of Spg029558 vs. ExPASy TrEMBL
Match: A0A6J1DE54 (exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 85/107 (79.44%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYH
Sbjct: 110 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDARAYH 169

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGG 164
           LSTAKNELGVVSAES+AGAVMVPISWTEMQCPLTGQIQQRKVAKVGG
Sbjct: 170 LSTAKNELGVVSAESTAGAVMVPISWTEMQCPLTGQIQQRKVAKVGG 195

[Close]
BLAST of Spg029558 vs. ExPASy TrEMBL
Match: A0A0A0L935 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.7e-34
Identity = 83/107 (77.57%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDARAYH
Sbjct: 111 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDARAYH 170

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGG 164
           LSTAKNELGVVSAES+AGA MVPISWTEMQCP+TGQIQQRKVAKVGG
Sbjct: 171 LSTAKNELGVVSAESTAGAEMVPISWTEMQCPVTGQIQQRKVAKVGG 196

[Close]
BLAST of Spg029558 vs. ExPASy TrEMBL
Match: A0A1S3CMV8 (exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.5e-33
Identity = 82/107 (76.64%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMHLSFRPGDIVKALV                     LSLGDA+AYH
Sbjct: 111 RQQDVRATEIDKVDMHLSFRPGDIVKALV---------------------LSLGDAKAYH 170

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVGG 164
           LSTAKNELGVVSAES+AGA MVPISWTEMQCP+TGQIQQRKVAKVGG
Sbjct: 171 LSTAKNELGVVSAESTAGAEMVPISWTEMQCPVTGQIQQRKVAKVGG 196

[Close]
BLAST of Spg029558 vs. TAIR 10
Match: AT5G38890.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-32
Identity = 73/106 (68.87%), Postives = 79/106 (74.53%), Query Frame = 0 

Query: 57  RQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLLEFPLLPVHKACKRTHLLSLGDARAYH 116
           RQQDVRATEIDKVDMH SF  GDIV+A+V                     LSLGDARAY+
Sbjct: 106 RQQDVRATEIDKVDMHQSFHAGDIVRAMV---------------------LSLGDARAYY 165

Query: 117 LSTAKNELGVVSAESSAGAVMVPISWTEMQCPLTGQIQQRKVAKVG 163
           LSTAKNELGVVSAES+AG  MVPISWTEMQCPL+GQ +QRKVAKVG
Sbjct: 166 LSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQTEQRKVAKVG 190

The following BLAST results are available for this feature:
BLAST of Spg029558 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6750711.11.8e-3677.19hypothetical protein POTOM_045220 [Populus tomentosa][more]
XP_022974279.14.3e-3579.63exosome complex component CSL4 [Cucurbita maxima][more]
KAG7020862.14.3e-3579.63Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023530831.14.3e-3579.63exosome complex component CSL4 [Cucurbita pepo subsp. pepo][more]
XP_022934020.15.7e-3578.70exosome complex component CSL4 [Cucurbita moschata][more]
BLAST of Spg029558 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9Y3B28.5e-1851.89Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1[more]
Q9DAA68.5e-1850.94Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1[more]
P538592.0e-1140.57Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /... [more]
O598212.7e-1142.72Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
BLAST of Spg029558 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IH522.1e-3579.63exosome complex component CSL4 OS=Cucurbita maxima OX=3661 GN=LOC111472912 PE=4 ... [more]
A0A6J1F6G82.7e-3578.70exosome complex component CSL4 OS=Cucurbita moschata OX=3662 GN=LOC111441251 PE=... [more]
A0A6J1DE546.1e-3579.44exosome complex component CSL4 OS=Momordica charantia OX=3673 GN=LOC111019593 PE... [more]
A0A0A0L9356.7e-3477.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627150 PE=4 SV=1[more]
A0A1S3CMV81.5e-3376.64exosome complex component CSL4 OS=Cucumis melo OX=3656 GN=LOC103502755 PE=4 SV=1[more]
BLAST of Spg029558 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G38890.14.8e-3268.87Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 45..161
e-value: 3.5E-35
score: 123.0
IPR019495Exosome complex component CSL4, C-terminalPFAMPF10447EXOSC1coord: 57..87
e-value: 5.8E-7
score: 30.1
IPR039771Exosome complex component Csl4PANTHERPTHR126863'-5' EXORIBONUCLEASE CSL4-RELATEDcoord: 57..88
coord: 105..162
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 56..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029558.1Spg029558.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0072488 ammonium transmembrane transport
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0008519 ammonium transmembrane transporter activity
molecular_function GO:0003723 RNA binding