Spg029323 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029323
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box/LRR-repeat protein
Locationscaffold12: 37225675 .. 37225941 (+)
RNA-Seq ExpressionSpg029323
SyntenySpg029323
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCAAAATCCCATTTCCCGTTCTCTCCTCCTCTTCCTCTTCACAATTCTCCTCATCACCACCCCTCTCTCCGCCGCCCGTGGCCTCCCCGCCGCCGCACAACATCCAGCAAATGATCCTCTCCGCCCACCCACCACCTCAACAACATTCTCACTCACGGAGCCAACTGCCGCCGTGGAGGACGTCACCACACCCGGAAATTACTTCGCCGCCGTTTCGCTCCGGAAAGTCCCCGGCGGACCGAACCCGCTCCATAACTAA

mRNA sequence

ATGGCTTCTCAAAATCCCATTTCCCGTTCTCTCCTCCTCTTCCTCTTCACAATTCTCCTCATCACCACCCCTCTCTCCGCCGCCCGTGGCCTCCCCGCCGCCGCACAACATCCAGCAAATGATCCTCTCCGCCCACCCACCACCTCAACAACATTCTCACTCACGGAGCCAACTGCCGCCGTGGAGGACGTCACCACACCCGGAAATTACTTCGCCGCCGTTTCGCTCCGGAAAGTCCCCGGCGGACCGAACCCGCTCCATAACTAA

Coding sequence (CDS)

ATGGCTTCTCAAAATCCCATTTCCCGTTCTCTCCTCCTCTTCCTCTTCACAATTCTCCTCATCACCACCCCTCTCTCCGCCGCCCGTGGCCTCCCCGCCGCCGCACAACATCCAGCAAATGATCCTCTCCGCCCACCCACCACCTCAACAACATTCTCACTCACGGAGCCAACTGCCGCCGTGGAGGACGTCACCACACCCGGAAATTACTTCGCCGCCGTTTCGCTCCGGAAAGTCCCCGGCGGACCGAACCCGCTCCATAACTAA

Protein sequence

MASQNPISRSLLLFLFTILLITTPLSAARGLPAAAQHPANDPLRPPTTSTTFSLTEPTAAVEDVTTPGNYFAAVSLRKVPGGPNPLHN
Homology
BLAST of Spg029323 vs. NCBI nr
Match: KAA0042782.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 60/88 (68.18%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1  MASQNPISRSLLLFLFTILLITTPLSAARGLPAAAQHPANDPLRPPTTSTTFSLTEPTAA 60
          MASQN    SL LFLF ILL TTPL AAR LPA+A  P ND LRPPTT TTFS  +P AA
Sbjct: 1  MASQNSTPPSLFLFLFIILLTTTPLHAARRLPASAPQPENDSLRPPTT-TTFSFAQPPAA 60

Query: 61 VEDVTTPGNYFAAVSLRKVPGGPNPLHN 89
          V+D  T  NY   VSLRKVP GPNPLHN
Sbjct: 61 VDDQITSRNY--GVSLRKVPAGPNPLHN 85

BLAST of Spg029323 vs. NCBI nr
Match: KAG6579492.1 (hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 6.6e-14
Identity = 57/89 (64.04%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 1  MASQNPISRSLLLFLFTILLITT-PLSAARGLPAAAQHPANDPLRPPTTSTTFSLTEPTA 60
          MASQNPI+ SL LFLF ILL TT PLSA R L  A QHP ND L PPTTS  FS  +P  
Sbjct: 1  MASQNPIT-SLCLFLFIILLTTTAPLSAGRRLSTAEQHPENDSLPPPTTS--FSFIQPPT 60

Query: 61 AVEDVTTPGNYFAAVSLRKVPGGPNPLHN 89
           VE+     NY  AVS RKVP GPNPLHN
Sbjct: 61 TVENQAASQNY--AVSHRKVPAGPNPLHN 84

BLAST of Spg029323 vs. NCBI nr
Match: KGN50125.1 (hypothetical protein Csa_000058 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 8.6e-14
Identity = 60/92 (65.22%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 1  MASQNPI-SRSLLLFLFTILL-ITTPLSAARGLPAAAQHPAND--PLRPPTTSTTFSLTE 60
          MASQN I   SL LFLF ILL  TTPL AAR  P +A  P ND   L PPTTS TFS T+
Sbjct: 1  MASQNSIPPNSLFLFLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTS-TFSFTQ 60

Query: 61 PTAAVEDVTTPGNYFAAVSLRKVPGGPNPLHN 89
          P AAVED  T  NY   VSLRKVP GPNPLHN
Sbjct: 61 PPAAVEDQITSRNY--GVSLRKVPAGPNPLHN 89

BLAST of Spg029323 vs. NCBI nr
Match: KAG6606114.1 (Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 6.4e-09
Identity = 50/82 (60.98%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 1  MASQNPISRSLLLFLFTILLITTPLSAARGLPAAAQHPANDPLRPPTTSTTFSLTEPTAA 60
          MAS NP S  LLLFL TILL T  LSA     A AQ P ND L+PP TS+TFSL +   A
Sbjct: 1  MASPNPNSSFLLLFLVTILLTTASLSA-----ADAQQPPNDSLQPP-TSSTFSLPKSPPA 60

Query: 61 VEDVTTPGNYFAAVSLRKVPGG 83
          VEDV  P N+  AVSLRKVP G
Sbjct: 61 VEDVIAPQNH--AVSLRKVPAG 74

BLAST of Spg029323 vs. ExPASy TrEMBL
Match: A0A5A7THA6 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002830 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 60/88 (68.18%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1  MASQNPISRSLLLFLFTILLITTPLSAARGLPAAAQHPANDPLRPPTTSTTFSLTEPTAA 60
          MASQN    SL LFLF ILL TTPL AAR LPA+A  P ND LRPPTT TTFS  +P AA
Sbjct: 1  MASQNSTPPSLFLFLFIILLTTTPLHAARRLPASAPQPENDSLRPPTT-TTFSFAQPPAA 60

Query: 61 VEDVTTPGNYFAAVSLRKVPGGPNPLHN 89
          V+D  T  NY   VSLRKVP GPNPLHN
Sbjct: 61 VDDQITSRNY--GVSLRKVPAGPNPLHN 85

BLAST of Spg029323 vs. ExPASy TrEMBL
Match: A0A0A0KKA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.2e-14
Identity = 60/92 (65.22%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 1  MASQNPI-SRSLLLFLFTILL-ITTPLSAARGLPAAAQHPAND--PLRPPTTSTTFSLTE 60
          MASQN I   SL LFLF ILL  TTPL AAR  P +A  P ND   L PPTTS TFS T+
Sbjct: 1  MASQNSIPPNSLFLFLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTS-TFSFTQ 60

Query: 61 PTAAVEDVTTPGNYFAAVSLRKVPGGPNPLHN 89
          P AAVED  T  NY   VSLRKVP GPNPLHN
Sbjct: 61 PPAAVEDQITSRNY--GVSLRKVPAGPNPLHN 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042782.12.6e-1868.18F-box/LRR-repeat protein [Cucumis melo var. makuwa][more]
KAG6579492.16.6e-1464.04hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN50125.18.6e-1465.22hypothetical protein Csa_000058 [Cucumis sativus][more]
KAG6606114.16.4e-0960.98Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7THA61.2e-1868.18F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A0A0KKA94.2e-1465.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029323.1Spg029323.1mRNA