Spg029244 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029244
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description(thale cress) hypothetical protein
Locationscaffold12: 34572369 .. 34572614 (-)
RNA-Seq ExpressionSpg029244
SyntenySpg029244
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCCATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAATTCCTCCTCGGCAACTTCGTTAGGGCTTCTTCCTCTGTCCCTTCCTTCACTCCCAACAACACCGGCTCTGCCTCTTCCGCCTCCGTCGTGAAGTCGCCGCCGATCAACAAGGAAGAACCTAAGTCCAACAATTCCTCGATCAGGCCCAGATTTGCTCCCGAGTTCGATGGCCTCAATTGCTTCGAGACTCTCGTCCCCAATTGA

mRNA sequence

ATGAATTCCATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAATTCCTCCTCGGCAACTTCGTTAGGGCTTCTTCCTCTGTCCCTTCCTTCACTCCCAACAACACCGGCTCTGCCTCTTCCGCCTCCGTCGTGAAGTCGCCGCCGATCAACAAGGAAGAACCTAAGTCCAACAATTCCTCGATCAGGCCCAGATTTGCTCCCGAGTTCGATGGCCTCAATTGCTTCGAGACTCTCGTCCCCAATTGA

Coding sequence (CDS)

ATGAATTCCATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAATTCCTCCTCGGCAACTTCGTTAGGGCTTCTTCCTCTGTCCCTTCCTTCACTCCCAACAACACCGGCTCTGCCTCTTCCGCCTCCGTCGTGAAGTCGCCGCCGATCAACAAGGAAGAACCTAAGTCCAACAATTCCTCGATCAGGCCCAGATTTGCTCCCGAGTTCGATGGCCTCAATTGCTTCGAGACTCTCGTCCCCAATTGA

Protein sequence

MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASVVKSPPINKEEPKSNNSSIRPRFAPEFDGLNCFETLVPN
Homology
BLAST of Spg029244 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASVVKSPPINKEEPKSNNSS 60
          MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNN  +AS A     P   +EEPKS NS 
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNN-NNASPAVPKPLPSKKEEEPKSKNSL 60

Query: 61 IRPRFAPEFDGLNCFETLVPN 82
          ++PRFA E DGLNCFETLVPN
Sbjct: 61 MKPRFALELDGLNCFETLVPN 80

BLAST of Spg029244 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.0e-21
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLG-NFVRASSSVPSFTPNNTGSASSASVVKS--PPINKEEPKSN 60
          MNSMFSLFDAFAAEFLLG NFVRASSS+PSFTPNN  + +++S V    P   KEEPK  
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 NSSIRPRFAPEFDGLNCFETLVPN 82
          NSS++PRFA E DGLNCFETLVPN
Sbjct: 61 NSSVKPRFALELDGLNCFETLVPN 84

BLAST of Spg029244 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 58/86 (67.44%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASV-VKSPPINKEE----PK 60
          MNSMFS FDAFAAE L+G FV AS+SVPSFTPN  G  S++S  VKS P  K+E     K
Sbjct: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60

Query: 61 SNNSSIRPRFAPEFDGLNCFETLVPN 82
          S NSS++PRFA E DGLNCFETLVPN
Sbjct: 61 SKNSSMKPRFALELDGLNCFETLVPN 86

BLAST of Spg029244 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 59/86 (68.60%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 1   MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASV-VKSPPINKEE----PK 60
           MNSMFS FDAFAAE LLG FV AS+SVPSFTPN  G  S++S  VKS P  KEE     K
Sbjct: 81  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 140

Query: 61  SNNSSIRPRFAPEFDGLNCFETLVPN 82
           S NS ++PRFA E DGLNCFETLVPN
Sbjct: 141 SKNSLMKPRFALELDGLNCFETLVPN 166

BLAST of Spg029244 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 59/86 (68.60%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASV-VKSPPINKEE----PK 60
          MNSMFS FDAFAAE LLG FV AS+SVPSFTPN  G  S++S  VKS P  KEE     K
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 60

Query: 61 SNNSSIRPRFAPEFDGLNCFETLVPN 82
          S NS ++PRFA E DGLNCFETLVPN
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 86

BLAST of Spg029244 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.5e-22
Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASVVKSPPINKEEPKSNNSS 60
          MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNN  +AS A     P   +EEPKS NS 
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNN-NNASPAVPKPLPSKKEEEPKSKNSL 60

Query: 61 IRPRFAPEFDGLNCFETLVPN 82
          ++PRFA E DGLNCFETLVPN
Sbjct: 61 MKPRFALELDGLNCFETLVPN 80

BLAST of Spg029244 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLG-NFVRASSSVPSFTPNNTGSASSASVVKS--PPINKEEPKSN 60
          MNSMFSLFDAFAAEFLLG NFVRASSS+PSFTPNN  + +++S V    P   KEEPK  
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 NSSIRPRFAPEFDGLNCFETLVPN 82
          NSS++PRFA E DGLNCFETLVPN
Sbjct: 61 NSSVKPRFALELDGLNCFETLVPN 84

BLAST of Spg029244 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 59/86 (68.60%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASV-VKSPPINKEE----PK 60
          MNSMFS FDAFAAE LLG FV AS+SVPSFTPN  G  S++S  VKS P  KEE     K
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 60

Query: 61 SNNSSIRPRFAPEFDGLNCFETLVPN 82
          S NS ++PRFA E DGLNCFETLVPN
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 86

BLAST of Spg029244 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.4e-13
Identity = 55/86 (63.95%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASVVKSPPINK-----EEPK 60
          MNSMFSLFDAFAAE L+    RASS   SF PNN GS  S   VKSPP N      E+PK
Sbjct: 1  MNSMFSLFDAFAAELLMAKTFRASS---SFAPNN-GSGGS---VKSPPSNAAPDNLEQPK 60

Query: 61 SNNSSI--RPRFAPEFDGLNCFETLV 80
          SN +S+   PR APEFDGLNCFETLV
Sbjct: 61 SNKNSLLRPPRLAPEFDGLNCFETLV 79

BLAST of Spg029244 vs. ExPASy TrEMBL
Match: A0A5C7H1W0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_023293 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 45/86 (52.33%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRAS-------SSVPSFTPNNTGSASSASVVKSPPINKEE 60
          MNS+FS FDAF+AE LLG  VR S       SS  +   NN  +  S    K   INK+ 
Sbjct: 1  MNSIFSSFDAFSAE-LLGQKVRVSFAPTTTCSSTNATQKNNNNNLQSQESTKDVAINKK- 60

Query: 61 PKSNNSSIRPRFAPEFDGLNCFETLV 80
            S +SS +PRFAPE DGLNCFETLV
Sbjct: 61 -TSTSSSSKPRFAPELDGLNCFETLV 83

BLAST of Spg029244 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 3.4e-07
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASVVK-SPPINKEEPKSNNS 60
          MNSMFS FDA  AE ++G  V A+S V     N+  S+SS      S  + K+E  S N 
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEKASKNM 60

Query: 61 SI---RPRFAPEFDGLNCFETLV 80
           +    PRFA E DGL+CFET+V
Sbjct: 61 DLPTKTPRFALELDGLHCFETIV 82

BLAST of Spg029244 vs. TAIR 10
Match: AT5G54165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.5e-05
Identity = 29/81 (35.80%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASVVKSPPINKEEPKSNNSS 60
          M S+FS F+A  AE      + + +   S   N + +          PI+ ++ KSN   
Sbjct: 1  MMSIFSPFEALYAESNGFKMIFSGTKKQSSGDNQSPATDQQKNAGKTPISSDDEKSNKKK 60

Query: 61 IRP-RFAPEFDGLNCFETLVP 81
          I+P R APE DGL+CFET++P
Sbjct: 61 IQPMRIAPELDGLHCFETILP 81

BLAST of Spg029244 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-05
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 0

Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNTGSASSASVVKSPPINKEEPKSNNSS 60
          MNSMFS FDA  AE ++G  + AS    SFT     +  +A+     P  + + K+N SS
Sbjct: 1  MNSMFSAFDALFAE-VMGKNLMAS----SFTATTATTKPAAA-----PQTQTQEKANASS 60

Query: 61 IR-------PRFAPEFDGLNCFETLV 80
           +       PRFA E DGL+CFET+V
Sbjct: 61 KKIGLVQKIPRFALELDGLHCFETIV 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011654674.11.8e-2176.54uncharacterized protein LOC105435432 [Cucumis sativus][more]
KAA0042638.13.0e-2172.62uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK0... [more]
XP_023522684.13.1e-1867.44uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo][more]
KAG6579594.14.1e-1868.60hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022929066.14.1e-1868.60uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJT88.5e-2276.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1[more]
A0A5D3C6N31.5e-2172.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1EM232.0e-1868.60uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1E0L69.4e-1363.95uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
A0A5C7H1W01.2e-0752.33Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_023293 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G32928.13.4e-0745.78unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G54165.12.5e-0535.80unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G32920.14.2e-0541.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..63
NoneNo IPR availablePANTHERPTHR33641OS06G0133500 PROTEINcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029244.1Spg029244.1mRNA