Spg029204 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029204
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	transmembrane protein 120 homolog
Location	scaffold12: 33247257 .. 33247682 (-)
RNA-Seq Expression	Spg029204
Synteny	Spg029204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGACCGAGAACATGGTCGATTCGTCGCAGAACTTGGAGGATGAAGTTGGGAGAGTGGTGGAACAGGTAAAAGAGCTGCATGATTCGGCCGCATCTCTAATCTCCAGAACAGCCAGCGACGAACAGTCTCTCCGCCAGCGTGCTCTCTCTCTCGAGTCTTCCATTCGCCGTCTTCGTTCTTTACACGATTCGCTTCTCTCCAAGAAGCTTTTGGACCCCAAGCTTGCTGACAAGGCATGTTTCTATCTCAATTTTCTACGCATTTCATTGGAAATCTTTTGTTCTGCAATCGACGGATCGATTTCATTATTTTTATTTCTCGTTTGGATGAATCAGCTGGAAGATGACTTGCAGAGAGCTAGATGTATGATGGTGGATGGAGAAGTTGCATCGTTTCTTCCCGGGAAGGCGCAGGGTTAG

mRNA sequence

ATGGTGGAGACCGAGAACATGGTCGATTCGTCGCAGAACTTGGAGGATGAAGTTGGGAGAGTGGTGGAACAGGTAAAAGAGCTGCATGATTCGGCCGCATCTCTAATCTCCAGAACAGCCAGCGACGAACAGTCTCTCCGCCAGCGTGCTCTCTCTCTCGAGTCTTCCATTCGCCGTCTTCGTTCTTTACACGATTCGCTTCTCTCCAAGAAGCTTTTGGACCCCAAGCTTGCTGACAAGGCATGTTTCTATCTCAATTTTCTACGCATTTCATTGGAAATCTTTTGTTCTGCAATCGACGGATCGATTTCATTATTTTTATTTCTCGTTTGGATGAATCAGCTGGAAGATGACTTGCAGAGAGCTAGATGTATGATGGTGGATGGAGAAGTTGCATCGTTTCTTCCCGGGAAGGCGCAGGGTTAG

Coding sequence (CDS)

ATGGTGGAGACCGAGAACATGGTCGATTCGTCGCAGAACTTGGAGGATGAAGTTGGGAGAGTGGTGGAACAGGTAAAAGAGCTGCATGATTCGGCCGCATCTCTAATCTCCAGAACAGCCAGCGACGAACAGTCTCTCCGCCAGCGTGCTCTCTCTCTCGAGTCTTCCATTCGCCGTCTTCGTTCTTTACACGATTCGCTTCTCTCCAAGAAGCTTTTGGACCCCAAGCTTGCTGACAAGGCATGTTTCTATCTCAATTTTCTACGCATTTCATTGGAAATCTTTTGTTCTGCAATCGACGGATCGATTTCATTATTTTTATTTCTCGTTTGGATGAATCAGCTGGAAGATGACTTGCAGAGAGCTAGATGTATGATGGTGGATGGAGAAGTTGCATCGTTTCTTCCCGGGAAGGCGCAGGGTTAG

Protein sequence

MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRLRSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQRARCMMVDGEVASFLPGKAQG

Homology

[Close]

BLAST of Spg029204 vs. NCBI nr
Match: XP_023534446.1 (transmembrane protein 120 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-36
Identity = 98/141 (69.50%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVETENMVDSS N+EDEVGRVVEQ KELHDSAASLISRTASDEQSL QRALSL+SSIRRL
Sbjct: 1   MVETENMVDSSHNVEDEVGRVVEQAKELHDSAASLISRTASDEQSLCQRALSLDSSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL DSLLSKKLLDPK+ADK                                  LEDDLQ
Sbjct: 61  RSLLDSLLSKKLLDPKIADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARC+MVDGEVASFLP KAQG
Sbjct: 121 RARCLMVDGEVASFLPRKAQG 107

[Close]

BLAST of Spg029204 vs. NCBI nr
Match: XP_022957893.1 (transmembrane protein 120 homolog [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 5.7e-36
Identity = 97/141 (68.79%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVETENM DSS N+EDEVGRVVEQ KELHDSAASLISRTASDEQSL QRALSL+SSIRRL
Sbjct: 1   MVETENMADSSHNVEDEVGRVVEQAKELHDSAASLISRTASDEQSLCQRALSLDSSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL DSLLSKKLLDPK+ADK                                  LEDDLQ
Sbjct: 61  RSLLDSLLSKKLLDPKIADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARC+MVDGEVASFLP KAQG
Sbjct: 121 RARCLMVDGEVASFLPRKAQG 107

[Close]

BLAST of Spg029204 vs. NCBI nr
Match: KAG6605629.1 (Transmembrane protein 120-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.0 bits (406), Expect = 7.5e-36
Identity = 97/141 (68.79%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVETENM DSS N+EDEVGRVVEQ KELHDSAASLISRTASDEQSL QRALSL+SSIRRL
Sbjct: 1   MVETENMADSSHNVEDEVGRVVEQAKELHDSAASLISRTASDEQSLCQRALSLDSSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL DSLLSKKLLDPK+ADK                                  LEDDLQ
Sbjct: 61  RSLLDSLLSKKLLDPKVADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARC+MVDGEVASFLP KAQG
Sbjct: 121 RARCLMVDGEVASFLPRKAQG 107

[Close]

BLAST of Spg029204 vs. NCBI nr
Match: XP_022996276.1 (transmembrane protein 120 homolog [Cucurbita maxima])

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-35
Identity = 96/141 (68.09%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVETENM DSS N+EDEVGRVVEQ KELHDSAASLISRTA+DEQSL QRALSL+SSIRRL
Sbjct: 1   MVETENMADSSHNVEDEVGRVVEQAKELHDSAASLISRTATDEQSLCQRALSLDSSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL DSLLSKKLLDPK+ADK                                  LEDDLQ
Sbjct: 61  RSLLDSLLSKKLLDPKIADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARC+MVDGEVASFLP KAQG
Sbjct: 121 RARCLMVDGEVASFLPRKAQG 107

[Close]

BLAST of Spg029204 vs. NCBI nr
Match: XP_038874569.1 (transmembrane protein 120 homolog [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-35
Identity = 96/141 (68.09%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVET+NM DSS N+EDEVGRVVEQ KELHDSAASLISRTASDEQSLRQRALSLESSIRRL
Sbjct: 1   MVETDNMADSSHNVEDEVGRVVEQAKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL +SLLSKKLLD KLA+K                                  LEDDLQ
Sbjct: 61  RSLLNSLLSKKLLDSKLAEK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RA+CMMVDGEVASFLPGK QG
Sbjct: 121 RAKCMMVDGEVASFLPGKPQG 107

[Close]

BLAST of Spg029204 vs. ExPASy TrEMBL
Match: A0A6J1H1J9 (transmembrane protein 120 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459292 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.8e-36
Identity = 97/141 (68.79%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVETENM DSS N+EDEVGRVVEQ KELHDSAASLISRTASDEQSL QRALSL+SSIRRL
Sbjct: 1   MVETENMADSSHNVEDEVGRVVEQAKELHDSAASLISRTASDEQSLCQRALSLDSSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL DSLLSKKLLDPK+ADK                                  LEDDLQ
Sbjct: 61  RSLLDSLLSKKLLDPKIADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARC+MVDGEVASFLP KAQG
Sbjct: 121 RARCLMVDGEVASFLPRKAQG 107

[Close]

BLAST of Spg029204 vs. ExPASy TrEMBL
Match: A0A6J1K497 (transmembrane protein 120 homolog OS=Cucurbita maxima OX=3661 GN=LOC111491549 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.2e-36
Identity = 96/141 (68.09%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVETENM DSS N+EDEVGRVVEQ KELHDSAASLISRTA+DEQSL QRALSL+SSIRRL
Sbjct: 1   MVETENMADSSHNVEDEVGRVVEQAKELHDSAASLISRTATDEQSLCQRALSLDSSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL DSLLSKKLLDPK+ADK                                  LEDDLQ
Sbjct: 61  RSLLDSLLSKKLLDPKIADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARC+MVDGEVASFLP KAQG
Sbjct: 121 RARCLMVDGEVASFLPRKAQG 107

[Close]

BLAST of Spg029204 vs. ExPASy TrEMBL
Match: A0A6J1DZK7 (transmembrane protein 120 homolog OS=Momordica charantia OX=3673 GN=LOC111026046 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.6e-34
Identity = 92/141 (65.25%), Postives = 98/141 (69.50%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVET+N+VDS  N+EDEVGRVVEQ KELHDSAAS+ISR  +DEQSLRQRALSL+SSIRRL
Sbjct: 1   MVETDNVVDSPNNIEDEVGRVVEQAKELHDSAASIISRATTDEQSLRQRALSLDSSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL DSLLS KLLD KLADK                                  LEDDLQ
Sbjct: 61  RSLLDSLLSNKLLDSKLADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARCMM DGEVASFLPGKAQG
Sbjct: 121 RARCMMADGEVASFLPGKAQG 107

[Close]

BLAST of Spg029204 vs. ExPASy TrEMBL
Match: A0A6J1ELR4 (transmembrane protein 120 homolog OS=Cucurbita moschata OX=3662 GN=LOC111435702 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.4e-34
Identity = 93/141 (65.96%), Postives = 100/141 (70.92%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVETEN+ DS QN+EDEVG+VVEQ KELHDSAASLISRTA+DEQ+LRQ ALSLESSIRRL
Sbjct: 1   MVETENITDSLQNVEDEVGKVVEQAKELHDSAASLISRTATDEQALRQSALSLESSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL +SLLSK+LLD KLADK                                  LEDDLQ
Sbjct: 61  RSLLNSLLSKELLDSKLADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARCMMVDGEVASFLPGK QG
Sbjct: 121 RARCMMVDGEVASFLPGKPQG 107

[Close]

BLAST of Spg029204 vs. ExPASy TrEMBL
Match: A0A6J1I4E8 (transmembrane protein 120 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469062 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.7e-33
Identity = 91/141 (64.54%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 1   MVETENMVDSSQNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRL 60
           MVETEN+ DS QN+EDEVG+VVEQ KELHDSAASLISRTA+DEQ+LRQ ALSLESSIRRL
Sbjct: 1   MVETENITDSLQNVEDEVGKVVEQAKELHDSAASLISRTATDEQALRQSALSLESSIRRL 60

Query: 61  RSLHDSLLSKKLLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQ 120
           RSL +SL+SK+LLD KLADK                                  LEDDLQ
Sbjct: 61  RSLLNSLISKELLDTKLADK----------------------------------LEDDLQ 107

Query: 121 RARCMMVDGEVASFLPGKAQG 142
           RARCMM DGEVASFLPGK QG
Sbjct: 121 RARCMMADGEVASFLPGKPQG 107

[Close]

BLAST of Spg029204 vs. TAIR 10
Match: AT4G10430.1 (TMPIT-like protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-19
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 14  LEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRLRSLHDSLLSKKLL 73
           +E+EV +++++VKELHDSAAS IS ++  E SLRQ+A +++SSIRR   LH +++S K L
Sbjct: 3   VEEEVKQIIDEVKELHDSAASFISSSSQQELSLRQKASAVDSSIRR---LHSTIVSNKNL 62

Query: 74  DPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQRARCMMVDGEVAS 133
           DPKL +K                                  LE+DL RARCM+VDGE +S
Sbjct: 63  DPKLVEK----------------------------------LEEDLHRARCMLVDGETSS 93

Query: 134 FLPGKAQG 142
           FLP K QG
Sbjct: 123 FLPSKPQG 93

[Close]

BLAST of Spg029204 vs. TAIR 10
Match: AT4G10430.3 (TMPIT-like protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-19
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 14  LEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRLRSLHDSLLSKKLL 73
           +E+EV +++++VKELHDSAAS IS ++  E SLRQ+A +++SSIRR   LH +++S K L
Sbjct: 3   VEEEVKQIIDEVKELHDSAASFISSSSQQELSLRQKASAVDSSIRR---LHSTIVSNKNL 62

Query: 74  DPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQRARCMMVDGEVAS 133
           DPKL +K                                  LE+DL RARCM+VDGE +S
Sbjct: 63  DPKLVEK----------------------------------LEEDLHRARCMLVDGETSS 93

Query: 134 FLPGKAQG 142
           FLP K QG
Sbjct: 123 FLPSKPQG 93

[Close]

BLAST of Spg029204 vs. TAIR 10
Match: AT1G33230.1 (TMPIT-like protein )

HSP 1 Score: 91.3 bits (225), Expect = 6.8e-19
Identity = 57/130 (43.85%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 12  QNLEDEVGRVVEQVKELHDSAASLISRTASDEQSLRQRALSLESSIRRLRSLHDSLLSKK 71
           + +E+EV R+VEQVKELHDS+ S +S ++ +E SLR RA  ++SSIRR   LH +L S K
Sbjct: 2   EEVEEEVRRIVEQVKELHDSSTSFVSSSSQEELSLRNRASVVDSSIRR---LHSTLASDK 61

Query: 72  LLDPKLADKACFYLNFLRISLEIFCSAIDGSISLFLFLVWMNQLEDDLQRARCMMVDGEV 131
            LDPKL +K                                  LE+DLQRARCM+ DG+ 
Sbjct: 62  HLDPKLFEK----------------------------------LEEDLQRARCMLADGDT 94

Query: 132 ASFLPGKAQG 142
           +SFLP K QG
Sbjct: 122 SSFLPSKPQG 94

The following BLAST results are available for this feature:

BLAST of Spg029204 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534446.1	2.0e-36	69.50	transmembrane protein 120 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022957893.1	5.7e-36	68.79	transmembrane protein 120 homolog [Cucurbita moschata]	[more]
KAG6605629.1	7.5e-36	68.79	Transmembrane protein 120-like protein, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022996276.1	1.3e-35	68.09	transmembrane protein 120 homolog [Cucurbita maxima]	[more]
XP_038874569.1	1.7e-35	68.09	transmembrane protein 120 homolog [Benincasa hispida]	[more]

BLAST of Spg029204 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H1J9	2.8e-36	68.79	transmembrane protein 120 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459292 ...	[more]
A0A6J1K497	6.2e-36	68.09	transmembrane protein 120 homolog OS=Cucurbita maxima OX=3661 GN=LOC111491549 PE...	[more]
A0A6J1DZK7	2.6e-34	65.25	transmembrane protein 120 homolog OS=Momordica charantia OX=3673 GN=LOC111026046...	[more]
A0A6J1ELR4	3.4e-34	65.96	transmembrane protein 120 homolog OS=Cucurbita moschata OX=3662 GN=LOC111435702 ...	[more]
A0A6J1I4E8	1.7e-33	64.54	transmembrane protein 120 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469062 PE...	[more]

BLAST of Spg029204 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10430.1	3.1e-19	43.75	TMPIT-like protein	[more]
AT4G10430.3	3.1e-19	43.75	TMPIT-like protein	[more]
AT1G33230.1	6.8e-19	43.85	TMPIT-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21433:SF6	TMPIT-LIKE PROTEIN-RELATED	coord: 8..85
IPR012926	Ion channel TACAN/TMEM120B	PANTHER	PTHR21433	TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA	coord: 8..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029204.1	Spg029204.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane