Spg029149 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029149
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	mRNA cap-binding protein
Location	scaffold11: 24146716 .. 24147517 (-)
RNA-Seq Expression	Spg029149
Synteny	Spg029149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATACGAAAGGCGCTCTCCCCTTTCTGTTTTCCGGTTCTCGGTTGTGCTGCTTAATTTGCAGTTTCGCATACGCACAAAGTTGGCGACAAAAGCAATTTAGGGCACACGAAGAAGAAGCAGTCAATGGAGTTGGTAGCCGAGAAGAAGGATTTTGATTCTGCAAACGACAACAACAAGCTCAACTCTGCTCAAGCAGTTCTCGATTCTTCTTATCCATCCTCAGTCGCTGCTGATGACACTGGTAGTTATAACAATTCCAAAGAAGCTGAAGATTTAAGTGAACGCGTAGCTCGAGACCTCAAAGATGGTCTTCATCCCCTAAAGGTACTTTCGCTCTCTCTCTCTCTCTCTTGCACGCACGAAATTTGCCTATGATGTGTAATTGAAATTTGATCTGCTCGATTTTCATTTCCTGGTAGAATTTGTGCGTCTACCATTATTGTTGTGTTGTTCTCTTCTCATGACCTTGTTTTGGAGTATTCTCGGATTTTCAAGTTGAAAACGTTGTTAAAATGATTCGCCATGTTCATTTGGTTTACTCGCAGTTATACATGCTTAGATAAGTATTCGCTATTGATACTCATTATTTGTATTTACTCGGCGAGGTAGGGGTGTAGGTGAGACATCTTGGGTGGATAGGAGGTTGCCCTCTTTGATTACTTGAGTTTAATTATAATCAGGACAAAGAAATGAAGATTTCGTTGATTGAAGAATTGAAGAGTATTCTTGTGTCTGTTTTTTGGAACTCAGACGTAGCTGTCCTACCTCATTTTGTATTAAGTCCTGAAGAGGGTTATTAA

mRNA sequence

ATGGAGTTGGTAGCCGAGAAGAAGGATTTTGATTCTGCAAACGACAACAACAAGCTCAACTCTGCTCAAGCAGTTCTCGATTCTTCTTATCCATCCTCAGTCGCTGCTGATGACACTGGTAGTTATAACAATTCCAAAGAAGCTGAAGATTTAAGTGAACGCGTAGCTCGAGACCTCAAAGATGGTCTTCATCCCCTAAAGGACAAAGAAATGAAGATTTCGTTGATTGAAGAATTGAAGAGTATTCTTGTGTCTGTTTTTTGGAACTCAGACGTAGCTGTCCTACCTCATTTTGTATTAAGTCCTGAAGAGGGTTATTAA

Coding sequence (CDS)

ATGGAGTTGGTAGCCGAGAAGAAGGATTTTGATTCTGCAAACGACAACAACAAGCTCAACTCTGCTCAAGCAGTTCTCGATTCTTCTTATCCATCCTCAGTCGCTGCTGATGACACTGGTAGTTATAACAATTCCAAAGAAGCTGAAGATTTAAGTGAACGCGTAGCTCGAGACCTCAAAGATGGTCTTCATCCCCTAAAGGACAAAGAAATGAAGATTTCGTTGATTGAAGAATTGAAGAGTATTCTTGTGTCTGTTTTTTGGAACTCAGACGTAGCTGTCCTACCTCATTTTGTATTAAGTCCTGAAGAGGGTTATTAA

Protein sequence

MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLKDGLHPLKDKEMKISLIEELKSILVSVFWNSDVAVLPHFVLSPEEGY

Homology

[Close]

BLAST of Spg029149 vs. NCBI nr
Match: XP_022930593.1 (eukaryotic translation initiation factor NCBP [Cucurbita moschata] >XP_022980712.1 eukaryotic translation initiation factor NCBP [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          MELVAEKKDFDSANDNNKLNSAQAVLDSSYP SVAAD+TGS NNSKEAEDLSERVARDLK
Sbjct: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPPSVAADETGSNNNSKEAEDLSERVARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 69

[Close]

BLAST of Spg029149 vs. NCBI nr
Match: XP_023526048.1 (eukaryotic translation initiation factor NCBP [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-24
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          MELV EKKDFDSANDNNKLNSAQAVLDSSYP SVAAD+TGS NNSKEAEDLSERVARDLK
Sbjct: 1  MELVTEKKDFDSANDNNKLNSAQAVLDSSYPPSVAADETGSNNNSKEAEDLSERVARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 69

[Close]

BLAST of Spg029149 vs. NCBI nr
Match: KAG6581660.1 (Eukaryotic translation initiation factor NCBP, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-24
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          MELVAEKKDFDSANDNNKLNSAQAVLDSSYP SVA D+TGS NNSKEAEDLSERVARDLK
Sbjct: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPPSVAVDETGSNNNSKEAEDLSERVARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 69

[Close]

BLAST of Spg029149 vs. NCBI nr
Match: XP_022155968.1 (eukaryotic translation initiation factor NCBP [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          MELV EKK+FD+ANDN +LN+AQ VLDSSYP S+AADD+ ++NN+KE EDLSERVARDLK
Sbjct: 1  MELVTEKKEFDAANDNKQLNTAQTVLDSSYPPSLAADDSSNHNNTKEVEDLSERVARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 69

[Close]

BLAST of Spg029149 vs. NCBI nr
Match: XP_038904120.1 (eukaryotic translation initiation factor NCBP isoform X2 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-16
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          MELV EK+DFDSANDNNKLNSAQ + DSS+P S+ +DDT    N+KEAEDLSERVARDLK
Sbjct: 1  MELVGEKRDFDSANDNNKLNSAQPLFDSSHPPSL-SDDT----NAKEAEDLSERVARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 64

[Close]

BLAST of Spg029149 vs. ExPASy TrEMBL
Match: A0A6J1IS20 (mRNA cap-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111479999 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          MELVAEKKDFDSANDNNKLNSAQAVLDSSYP SVAAD+TGS NNSKEAEDLSERVARDLK
Sbjct: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPPSVAADETGSNNNSKEAEDLSERVARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 69

[Close]

BLAST of Spg029149 vs. ExPASy TrEMBL
Match: A0A6J1EVP3 (mRNA cap-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111436995 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          MELVAEKKDFDSANDNNKLNSAQAVLDSSYP SVAAD+TGS NNSKEAEDLSERVARDLK
Sbjct: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPPSVAADETGSNNNSKEAEDLSERVARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 69

[Close]

BLAST of Spg029149 vs. ExPASy TrEMBL
Match: A0A6J1DPB4 (mRNA cap-binding protein OS=Momordica charantia OX=3673 GN=LOC111022952 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.1e-20
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          MELV EKK+FD+ANDN +LN+AQ VLDSSYP S+AADD+ ++NN+KE EDLSERVARDLK
Sbjct: 1  MELVTEKKEFDAANDNKQLNTAQTVLDSSYPPSLAADDSSNHNNTKEVEDLSERVARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 69

[Close]

BLAST of Spg029149 vs. ExPASy TrEMBL
Match: A0A5A7UUL0 (mRNA cap-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00770 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-14
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          ME V EK+DFDSANDNNK NSAQ +LDSS+  S+ ADDT    N+KEAE+ SER+ARDLK
Sbjct: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSL-ADDT----NAKEAEEFSERIARDLK 60

Query: 61 DGLHPLKDK 70
          DGLHPLK K
Sbjct: 61 DGLHPLKHK 64

[Close]

BLAST of Spg029149 vs. ExPASy TrEMBL
Match: A0A0A0LI71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842730 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-14
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPSSVAADDTGSYNNSKEAEDLSERVARDLK 60
          ME V E +DFDSANDNNK NSAQ +LDSS+  S+ ADDT    N+KEAE+LSER+ARDLK
Sbjct: 1  MEFVGENRDFDSANDNNKPNSAQPLLDSSFQPSL-ADDT----NAKEAEELSERIARDLK 60

Query: 61 DGLHPLKDKEMKISLIE 78
          DGLHPLK +    SL E
Sbjct: 61 DGLHPLKTQMRAYSLSE 72

The following BLAST results are available for this feature:

BLAST of Spg029149 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930593.1	1.3e-24	94.20	eukaryotic translation initiation factor NCBP [Cucurbita moschata] >XP_022980712...	[more]
XP_023526048.1	3.8e-24	92.75	eukaryotic translation initiation factor NCBP [Cucurbita pepo subsp. pepo]	[more]
KAG6581660.1	3.8e-24	92.75	Eukaryotic translation initiation factor NCBP, partial [Cucurbita argyrosperma s...	[more]
XP_022155968.1	1.3e-19	76.81	eukaryotic translation initiation factor NCBP [Momordica charantia]	[more]
XP_038904120.1	3.8e-16	76.81	eukaryotic translation initiation factor NCBP isoform X2 [Benincasa hispida]	[more]

BLAST of Spg029149 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IS20	6.3e-25	94.20	mRNA cap-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111479999 PE=3 SV=1	[more]
A0A6J1EVP3	6.3e-25	94.20	mRNA cap-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111436995 PE=3 SV=1	[more]
A0A6J1DPB4	6.1e-20	76.81	mRNA cap-binding protein OS=Momordica charantia OX=3673 GN=LOC111022952 PE=3 SV=...	[more]
A0A5A7UUL0	3.8e-14	71.01	mRNA cap-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0LI71	3.8e-14	66.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842730 PE=4 SV=1	[more]

BLAST of Spg029149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029149.1	Spg029149.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity