Spg029144 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029144
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold11: 23852851 .. 23853324 (-)
RNA-Seq ExpressionSpg029144
SyntenySpg029144
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTCGACGAGTGGGAACTCCTCGACTGCCATGAAGACGACGAGAAAGAACTCCGTTCCTCCAAACGCAGCGACGATCAGAAAATAGCTTTCGCTTCAAACGATACTGATCGATCTATTTCCGTTTCAGATGAACAGCACAAGATCACTGGCAGAGCGGCGGATGAAGACACCGTTTCACAAGTTTACGGCCAGAAATTGATCGGCGACGTGAAAAAGGACTCACCAAGGTTTTGCACCGCGGCGGAATCAGACATGCACGAGGAGGTAGAAGGCAAGGAGGAGGGCGTAGATTCAAGAAGAATGAATATGGCGATGGAGAAGAGACAAAAATGGGGGAGAGCGGCCATTTGTTCGTTTGGAGTTGCTGTGGCGGCTACAATTTGCTCAGTGTTATTGGGAAGCCATAGCCACCAGCAAGGGGGAACCAACAAGCAGCATCAGAAGAACCAAATCTGCCCTTGTGAATAG

mRNA sequence

ATGGGCCTCGACGAGTGGGAACTCCTCGACTGCCATGAAGACGACGAGAAAGAACTCCGTTCCTCCAAACGCAGCGACGATCAGAAAATAGCTTTCGCTTCAAACGATACTGATCGATCTATTTCCGTTTCAGATGAACAGCACAAGATCACTGGCAGAGCGGCGGATGAAGACACCGTTTCACAAGTTTACGGCCAGAAATTGATCGGCGACGTGAAAAAGGACTCACCAAGGTTTTGCACCGCGGCGGAATCAGACATGCACGAGGAGGTAGAAGGCAAGGAGGAGGGCGTAGATTCAAGAAGAATGAATATGGCGATGGAGAAGAGACAAAAATGGGGGAGAGCGGCCATTTGTTCGTTTGGAGTTGCTGTGGCGGCTACAATTTGCTCAGTGTTATTGGGAAGCCATAGCCACCAGCAAGGGGGAACCAACAAGCAGCATCAGAAGAACCAAATCTGCCCTTGTGAATAG

Coding sequence (CDS)

ATGGGCCTCGACGAGTGGGAACTCCTCGACTGCCATGAAGACGACGAGAAAGAACTCCGTTCCTCCAAACGCAGCGACGATCAGAAAATAGCTTTCGCTTCAAACGATACTGATCGATCTATTTCCGTTTCAGATGAACAGCACAAGATCACTGGCAGAGCGGCGGATGAAGACACCGTTTCACAAGTTTACGGCCAGAAATTGATCGGCGACGTGAAAAAGGACTCACCAAGGTTTTGCACCGCGGCGGAATCAGACATGCACGAGGAGGTAGAAGGCAAGGAGGAGGGCGTAGATTCAAGAAGAATGAATATGGCGATGGAGAAGAGACAAAAATGGGGGAGAGCGGCCATTTGTTCGTTTGGAGTTGCTGTGGCGGCTACAATTTGCTCAGTGTTATTGGGAAGCCATAGCCACCAGCAAGGGGGAACCAACAAGCAGCATCAGAAGAACCAAATCTGCCCTTGTGAATAG

Protein sequence

MGLDEWELLDCHEDDEKELRSSKRSDDQKIAFASNDTDRSISVSDEQHKITGRAADEDTVSQVYGQKLIGDVKKDSPRFCTAAESDMHEEVEGKEEGVDSRRMNMAMEKRQKWGRAAICSFGVAVAATICSVLLGSHSHQQGGTNKQHQKNQICPCE
Homology
BLAST of Spg029144 vs. NCBI nr
Match: KGN59752.1 (hypothetical protein Csa_001232 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-18
Identity = 70/152 (46.05%), Postives = 83/152 (54.61%), Query Frame = 0

Query: 1   MGLDEWELLDCHEDDEKELRSSKRSDDQKIAFASNDTDRSISVSDEQHKITGRAADEDTV 60
           MGLD+WELLDCHED ++E                             H        E+ V
Sbjct: 1   MGLDDWELLDCHEDHDQE-------------------------KSRPH--------ENVV 60

Query: 61  SQVYGQKLIGDVKKDSPRFCTAAESDMHEEVEGKEEGVDSR-RMNMAMEKRQKWGRAAIC 120
             + GQKLIGD K +       AE D+ E     EE VDSR  M+MAMEKR++WGR  +C
Sbjct: 61  --ISGQKLIGDTKNEME---AVAEFDVEE-----EEKVDSRGGMDMAMEKRKQWGRTVVC 109

Query: 121 SFGVAVAATICSVLLGSHSHQQGG---TNKQH 149
           SFG+AVAATICSVLLGSHSH  GG    NK+H
Sbjct: 121 SFGIAVAATICSVLLGSHSHHHGGGAFVNKRH 109

BLAST of Spg029144 vs. NCBI nr
Match: KAA0057194.1 (hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK18767.1 hypothetical protein E5676_scaffold257G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-15
Identity = 63/151 (41.72%), Postives = 79/151 (52.32%), Query Frame = 0

Query: 1   MGLDEWELLDCHEDDEKELRSSKRSDDQKIAFASNDTDRSISVSDEQHKITGRAADEDTV 60
           MGLD+WELLDCHED E++ R                                   + + +
Sbjct: 1   MGLDDWELLDCHEDREEKSRH----------------------------------ENEVI 60

Query: 61  SQVYGQKLIGDVKKDSPRFCTAAESDMHEEVEGKEEGVDSRRMNMAMEKRQKWGRAAICS 120
           S   GQKLI D KK+        E     EVE +E+    R M+MA EK+++ GRA +CS
Sbjct: 61  S---GQKLIADTKKE-------LEIVAEFEVEEEEKENSRRGMDMATEKKKQRGRAVVCS 107

Query: 121 FGVAVAATICSVLLGSHSHQQGG---TNKQH 149
           FG+AVAATICSVLLGSHSH  GG    NK+H
Sbjct: 121 FGIAVAATICSVLLGSHSHHHGGGAFVNKRH 107

BLAST of Spg029144 vs. ExPASy TrEMBL
Match: A0A0A0LG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 70/152 (46.05%), Postives = 83/152 (54.61%), Query Frame = 0

Query: 1   MGLDEWELLDCHEDDEKELRSSKRSDDQKIAFASNDTDRSISVSDEQHKITGRAADEDTV 60
           MGLD+WELLDCHED ++E                             H        E+ V
Sbjct: 1   MGLDDWELLDCHEDHDQE-------------------------KSRPH--------ENVV 60

Query: 61  SQVYGQKLIGDVKKDSPRFCTAAESDMHEEVEGKEEGVDSR-RMNMAMEKRQKWGRAAIC 120
             + GQKLIGD K +       AE D+ E     EE VDSR  M+MAMEKR++WGR  +C
Sbjct: 61  --ISGQKLIGDTKNEME---AVAEFDVEE-----EEKVDSRGGMDMAMEKRKQWGRTVVC 109

Query: 121 SFGVAVAATICSVLLGSHSHQQGG---TNKQH 149
           SFG+AVAATICSVLLGSHSH  GG    NK+H
Sbjct: 121 SFGIAVAATICSVLLGSHSHHHGGGAFVNKRH 109

BLAST of Spg029144 vs. ExPASy TrEMBL
Match: A0A5D3D5E0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00740 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 63/151 (41.72%), Postives = 79/151 (52.32%), Query Frame = 0

Query: 1   MGLDEWELLDCHEDDEKELRSSKRSDDQKIAFASNDTDRSISVSDEQHKITGRAADEDTV 60
           MGLD+WELLDCHED E++ R                                   + + +
Sbjct: 1   MGLDDWELLDCHEDREEKSRH----------------------------------ENEVI 60

Query: 61  SQVYGQKLIGDVKKDSPRFCTAAESDMHEEVEGKEEGVDSRRMNMAMEKRQKWGRAAICS 120
           S   GQKLI D KK+        E     EVE +E+    R M+MA EK+++ GRA +CS
Sbjct: 61  S---GQKLIADTKKE-------LEIVAEFEVEEEEKENSRRGMDMATEKKKQRGRAVVCS 107

Query: 121 FGVAVAATICSVLLGSHSHQQGG---TNKQH 149
           FG+AVAATICSVLLGSHSH  GG    NK+H
Sbjct: 121 FGIAVAATICSVLLGSHSHHHGGGAFVNKRH 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN59752.13.5e-1846.05hypothetical protein Csa_001232 [Cucumis sativus][more]
KAA0057194.13.6e-1541.72hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK1876... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LG951.7e-1846.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1[more]
A0A5D3D5E01.8e-1541.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029144.1Spg029144.1mRNA