Spg029050 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029050
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold5: 14464354 .. 14466193 (+)
RNA-Seq Expression	Spg029050
Synteny	Spg029050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTCCTCTTAACGTTGCTCTCCTCCTTCCACATGTGTATTTTCAGTCTAAGGCCCAAACGGCCCCTAAGGAACATTTGGCTACCCGAATGTTCGTTGAGTGGGGACAGTCTCAGTGATCCAAACATTTCAAACCTGTTGGATTTAGATACATTTGATTGTTGTTAGTGGGACTTAATGTTGTTATTTGATGGAAAACTTCTGTTGTACTTGTGTTGTATGTTGAAGTTCAAACTTATATAACACATTTAATTTATGCATTATGCTACCGTGTGATTAAGTTACTATTGAGATGCAAACAAAATTGTGAACCATAATAACAAATTGTCATATGCATGTAGGAAGATGGCAGGTGTCGAGAAAATCAAGAAGCATGTGTGGACCAGATTCAAGGACGCTAAATTAGTCGAGTGCCTCGTTCAATTGGTCCACAAGGGTGGTTGGAGGGCAAACAACAATATGTTCGAGGCCGGTTATCTAGCACGATTACACTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATCGACTTGACAATGACGATAGATTGTGAAGTCAAATCCCTAAAGCGGCAGTCCGGTGCAATTGTCGAGATGTTGGGTCCGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATACATGGAGGCTGAGAAAGATGTGTTCAATGTGTGGGTCAAGGTAAGGTTATTGTTGGTGTAGCCCATCCCGTGTATTTCATTTTATTAGCTTCTATTTTTATGTAATCATGTGCCAAGCACATGTGTTTCTGATCGAGATGTTAAATTCTTGAGTCATTTTTGGAAGACATTATGGAAGACATTTGATACATCTCTCAAGTATAGCACTACAAGCCACCCACAAACGGATGGACAAACCGAGGTGACCAATAGAACCTTGGGAAACCTCATCCGATGCTTGAGTGGAGATAAACCGCGACAATGGGATATGAATTTGGCACAAGCTGAGTTTGCCTACAATCACATGAAGAACCGGACCACAAGGAAGTTTCCATTTGAGCTTGTGTACACTCACATTCCTCGTTTAACATTGGACCTAACTAATATTCCTTCTTCTGTTGATCTTTGCCCTGAAGCAGAGGAAATGGCAACTAGGATTCAGGAATTACACCACCAAGTCCACAAGCACATTGAGGAACAAACGGAAAAATATAAGGCAGCTGCTGACACCAAGAGGCGATACAAAGAGTTTGCAATTGGCGATCTTGTGATGGTTCATCTACGGAAAAGCCGTTTCCCCACCAGTACTTACAGCAAGCTTAAGGAAAAGAAGATTGGTCCCGTGCCTATTTTGGAGAGATTTGGGGTCCTTGGGGATAATGCTTATAGAGTTCAACTTCCGTCCAATTATAGCATTAATCCCACTTTCAATATTGTTGATATCTTCCCTTACAATCCTCCGGATGAATTTGTTTTAGCTACATAACTCGAGGTCGAGTTCTTTTTGTAGGGGGGGAAGTTGATGTAGTTGGTTGTTAGTATTTTTGGTTAGTTAGCCCTTCGACCATGTGCATGGCATGTGCCTCTTTTAGTTTGTTATTCTGTTAGTTGGCCGCCCCCTTGTTTAGCCTATTTATAGGCTAAGTAGCCTTCATTTTTTAATATAATATAATTCAGAAGTTATTCATTGCATTCGGCTCCATCACTCCCTCCATTTTTCCTCCCTCCACCTCCCTCCATCTCTCCCTCTAATGATTTACTTTATGATGGCGGCTGCAAAGACGACGACAGTGACGCCGAAGAGGTAGATCGTGGGTGGAGAAGAAAAAATGAGGCATGGGTTGAGGAGCTTTTGCCGTGGTTTGTGCAGTAG

mRNA sequence

ATGCAGTCTCCTCTTAACGTTGCTCTCCTCCTTCCACATGTGTATTTTCAGTCTAAGGCCCAAACGGCCCCTAAGGAACATTTGGCTACCCGAATGTTCGTTGAGTGGGGACAGAAGATGGCAGGTGTCGAGAAAATCAAGAAGCATGTGTGGACCAGATTCAAGGACGCTAAATTAGTCGAGTGCCTCGTTCAATTGGTCCACAAGGGTGGTTGGAGGGCAAACAACAATATGTTCGAGGCCGGTTATCTAGCACGATTACACTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATCGACTTGACAATGACGATAGATTGTGAAGTCAAATCCCTAAAGCGGCAGTCCGGTGCAATTGTCGAGATGTTGGGTCCGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATACATGGAGGCTGAGAAAGATGTGTTCAATGTGTGGGTCAAGGTAAGTTATTCATTGCATTCGGCTCCATCACTCCCTCCATTTTTCCTCCCTCCACCTCCCTCCATCTCTCCCTCTAATGATTTACTTTATGATGGCGGCTGCAAAGACGACGACAGTGACGCCGAAGAGGTAGATCGTGGGTGGAGAAGAAAAAATGAGGCATGGGTTGAGGAGCTTTTGCCGTGGTTTGTGCAGTAG

Coding sequence (CDS)

ATGCAGTCTCCTCTTAACGTTGCTCTCCTCCTTCCACATGTGTATTTTCAGTCTAAGGCCCAAACGGCCCCTAAGGAACATTTGGCTACCCGAATGTTCGTTGAGTGGGGACAGAAGATGGCAGGTGTCGAGAAAATCAAGAAGCATGTGTGGACCAGATTCAAGGACGCTAAATTAGTCGAGTGCCTCGTTCAATTGGTCCACAAGGGTGGTTGGAGGGCAAACAACAATATGTTCGAGGCCGGTTATCTAGCACGATTACACTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATCGACTTGACAATGACGATAGATTGTGAAGTCAAATCCCTAAAGCGGCAGTCCGGTGCAATTGTCGAGATGTTGGGTCCGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATACATGGAGGCTGAGAAAGATGTGTTCAATGTGTGGGTCAAGGTAAGTTATTCATTGCATTCGGCTCCATCACTCCCTCCATTTTTCCTCCCTCCACCTCCCTCCATCTCTCCCTCTAATGATTTACTTTATGATGGCGGCTGCAAAGACGACGACAGTGACGCCGAAGAGGTAGATCGTGGGTGGAGAAGAAAAAATGAGGCATGGGTTGAGGAGCTTTTGCCGTGGTTTGTGCAGTAG

Protein sequence

MQSPLNVALLLPHVYFQSKAQTAPKEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEKDVFNVWVKVSYSLHSAPSLPPFFLPPPPSISPSNDLLYDGGCKDDDSDAEEVDRGWRRKNEAWVEELLPWFVQ

Homology

[Close]

BLAST of Spg029050 vs. NCBI nr
Match: KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-29
Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 25  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYL 84
           +++LA  MF +W   M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F  GYL
Sbjct: 39  RDNLAASMFTDW--HMSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYL 98

Query: 85  ARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEK 144
           A+L  M+ EK+ GC +  T  IDC +K+LKR   AI EM GP CSGFGWN+E K + AEK
Sbjct: 99  AQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEK 158

Query: 145 DVFNVWVK 153
           ++F+ WV+
Sbjct: 159 ELFDNWVR 164

[Close]

BLAST of Spg029050 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-29
Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 40  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCT 99
           MA + +  KH WT+ ++ K VECLV+LV  GGWR++N  F+ GYLA+L  M+ EK+ G  
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 100 IDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEKDVFNVWVK 153
           I  + TIDC VKSLK+   AI EM GP CSGFGWNEE++ + AE+D+F+ W+K
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of Spg029050 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-28
Identity = 62/129 (48.06%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 25  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYL 84
           ++ LA  MF++W   M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F +GYL
Sbjct: 323 RDDLAASMFIDW--HMSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRSGYL 382

Query: 85  ARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEK 144
           A+L  M+ EK+  C +  T  IDC +K+LKR   AI EM GP CSGFGWN+E K + AEK
Sbjct: 383 AQLVRMMAEKLR-CQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEK 442

Query: 145 DVFNVWVKV 154
           ++F+ WV+V
Sbjct: 443 ELFDNWVRV 448

[Close]

BLAST of Spg029050 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-27
Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 25  KEHLATRMFVEW--GQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAG 84
           ++ LA  MF +W    +M    +  KH WT+ ++AKLVECLV+LV  GGWR+NN  F  G
Sbjct: 155 RDQLAYTMFSDWELRDQMTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHG 214

Query: 85  YLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEA 144
           YLA+L  M+ +K+S   I  ++ +DC VKSLK+   +   M GP CSGFGWNE+++ + A
Sbjct: 215 YLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIA 274

Query: 145 EKDVFNVWVK 153
           E+D+F+ WVK
Sbjct: 275 ERDLFDNWVK 284

[Close]

BLAST of Spg029050 vs. NCBI nr
Match: KAA0041588.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-27
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 40  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCT 99
           M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F  GYLA+L  M+ EK+ GC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 100 IDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEKDVFNVWVK 153
           +  T  IDC +K+LKR   AIVEM GP CSGFGWN+E K + AEK++F+ WV+
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]

BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.8e-30
Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 25  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYL 84
           +++LA  MF +W   M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F  GYL
Sbjct: 39  RDNLAASMFTDW--HMSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYL 98

Query: 85  ARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEK 144
           A+L  M+ EK+ GC +  T  IDC +K+LKR   AI EM GP CSGFGWN+E K + AEK
Sbjct: 99  AQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEK 158

Query: 145 DVFNVWVK 153
           ++F+ WV+
Sbjct: 159 ELFDNWVR 164

[Close]

BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 40  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCT 99
           MA + +  KH WT+ ++ K VECLV+LV  GGWR++N  F+ GYLA+L  M+ EK+ G  
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 100 IDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEKDVFNVWVK 153
           I  + TIDC VKSLK+   AI EM GP CSGFGWNEE++ + AE+D+F+ W+K
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 40  MAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCT 99
           MA + +  KH WT+ ++ K VECLV+LV  GGWR++N  F+ GYLA+L  M+ EK+ G  
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 100 IDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEKDVFNVWVK 153
           I  + TIDC VKSLK+   AI EM GP CSGFGWNEE++ + AE+D+F+ W+K
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 62/129 (48.06%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 25  KEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYL 84
           ++ LA  MF++W   M+   +  +HVWTR ++  LVECL++LV  GGW+++N  F +GYL
Sbjct: 323 RDDLAASMFIDW--HMSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRSGYL 382

Query: 85  ARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEK 144
           A+L  M+ EK+  C +  T  IDC +K+LKR   AI EM GP CSGFGWN+E K + AEK
Sbjct: 383 AQLVRMMAEKLR-CQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEK 442

Query: 145 DVFNVWVKV 154
           ++F+ WV+V
Sbjct: 443 ELFDNWVRV 448

[Close]

BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.3e-28
Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 25  KEHLATRMFVEW--GQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAG 84
           ++ LA  MF +W    +M    +  KH WT+ ++AKLVECLV+LV  GGWR+NN  F  G
Sbjct: 155 RDQLAYTMFSDWELRDQMTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHG 214

Query: 85  YLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEA 144
           YLA+L  M+ +K+S   I  ++ +DC VKSLK+   +   M GP CSGFGWNE+++ + A
Sbjct: 215 YLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIA 274

Query: 145 EKDVFNVWVK 153
           E+D+F+ WVK
Sbjct: 275 ERDLFDNWVK 284

The following BLAST results are available for this feature:

BLAST of Spg029050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036924.1	1.6e-29	48.44	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008441954.1	4.7e-29	53.10	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0036474.1	4.0e-28	48.06	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043564.1	1.5e-27	46.92	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041588.1	2.0e-27	51.33	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg029050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T091	7.8e-30	48.44	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U0H7	2.3e-29	53.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	2.3e-29	53.10	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7SYW1	1.9e-28	48.06	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TJS2	7.3e-28	46.92	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg029050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 45..153
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 45..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029050.1	Spg029050.1	mRNA