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Spg029050 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGTCTCCTCTTAACGTTGCTCTCCTCCTTCCACATGTGTATTTTCAGTCTAAGGCCCAAACGGCCCCTAAGGAACATTTGGCTACCCGAATGTTCGTTGAGTGGGGACAGTCTCAGTGATCCAAACATTTCAAACCTGTTGGATTTAGATACATTTGATTGTTGTTAGTGGGACTTAATGTTGTTATTTGATGGAAAACTTCTGTTGTACTTGTGTTGTATGTTGAAGTTCAAACTTATATAACACATTTAATTTATGCATTATGCTACCGTGTGATTAAGTTACTATTGAGATGCAAACAAAATTGTGAACCATAATAACAAATTGTCATATGCATGTAGGAAGATGGCAGGTGTCGAGAAAATCAAGAAGCATGTGTGGACCAGATTCAAGGACGCTAAATTAGTCGAGTGCCTCGTTCAATTGGTCCACAAGGGTGGTTGGAGGGCAAACAACAATATGTTCGAGGCCGGTTATCTAGCACGATTACACTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATCGACTTGACAATGACGATAGATTGTGAAGTCAAATCCCTAAAGCGGCAGTCCGGTGCAATTGTCGAGATGTTGGGTCCGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATACATGGAGGCTGAGAAAGATGTGTTCAATGTGTGGGTCAAGGTAAGGTTATTGTTGGTGTAGCCCATCCCGTGTATTTCATTTTATTAGCTTCTATTTTTATGTAATCATGTGCCAAGCACATGTGTTTCTGATCGAGATGTTAAATTCTTGAGTCATTTTTGGAAGACATTATGGAAGACATTTGATACATCTCTCAAGTATAGCACTACAAGCCACCCACAAACGGATGGACAAACCGAGGTGACCAATAGAACCTTGGGAAACCTCATCCGATGCTTGAGTGGAGATAAACCGCGACAATGGGATATGAATTTGGCACAAGCTGAGTTTGCCTACAATCACATGAAGAACCGGACCACAAGGAAGTTTCCATTTGAGCTTGTGTACACTCACATTCCTCGTTTAACATTGGACCTAACTAATATTCCTTCTTCTGTTGATCTTTGCCCTGAAGCAGAGGAAATGGCAACTAGGATTCAGGAATTACACCACCAAGTCCACAAGCACATTGAGGAACAAACGGAAAAATATAAGGCAGCTGCTGACACCAAGAGGCGATACAAAGAGTTTGCAATTGGCGATCTTGTGATGGTTCATCTACGGAAAAGCCGTTTCCCCACCAGTACTTACAGCAAGCTTAAGGAAAAGAAGATTGGTCCCGTGCCTATTTTGGAGAGATTTGGGGTCCTTGGGGATAATGCTTATAGAGTTCAACTTCCGTCCAATTATAGCATTAATCCCACTTTCAATATTGTTGATATCTTCCCTTACAATCCTCCGGATGAATTTGTTTTAGCTACATAACTCGAGGTCGAGTTCTTTTTGTAGGGGGGGAAGTTGATGTAGTTGGTTGTTAGTATTTTTGGTTAGTTAGCCCTTCGACCATGTGCATGGCATGTGCCTCTTTTAGTTTGTTATTCTGTTAGTTGGCCGCCCCCTTGTTTAGCCTATTTATAGGCTAAGTAGCCTTCATTTTTTAATATAATATAATTCAGAAGTTATTCATTGCATTCGGCTCCATCACTCCCTCCATTTTTCCTCCCTCCACCTCCCTCCATCTCTCCCTCTAATGATTTACTTTATGATGGCGGCTGCAAAGACGACGACAGTGACGCCGAAGAGGTAGATCGTGGGTGGAGAAGAAAAAATGAGGCATGGGTTGAGGAGCTTTTGCCGTGGTTTGTGCAGTAG ATGCAGTCTCCTCTTAACGTTGCTCTCCTCCTTCCACATGTGTATTTTCAGTCTAAGGCCCAAACGGCCCCTAAGGAACATTTGGCTACCCGAATGTTCGTTGAGTGGGGACAGAAGATGGCAGGTGTCGAGAAAATCAAGAAGCATGTGTGGACCAGATTCAAGGACGCTAAATTAGTCGAGTGCCTCGTTCAATTGGTCCACAAGGGTGGTTGGAGGGCAAACAACAATATGTTCGAGGCCGGTTATCTAGCACGATTACACTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATCGACTTGACAATGACGATAGATTGTGAAGTCAAATCCCTAAAGCGGCAGTCCGGTGCAATTGTCGAGATGTTGGGTCCGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATACATGGAGGCTGAGAAAGATGTGTTCAATGTGTGGGTCAAGGTAAGTTATTCATTGCATTCGGCTCCATCACTCCCTCCATTTTTCCTCCCTCCACCTCCCTCCATCTCTCCCTCTAATGATTTACTTTATGATGGCGGCTGCAAAGACGACGACAGTGACGCCGAAGAGGTAGATCGTGGGTGGAGAAGAAAAAATGAGGCATGGGTTGAGGAGCTTTTGCCGTGGTTTGTGCAGTAG ATGCAGTCTCCTCTTAACGTTGCTCTCCTCCTTCCACATGTGTATTTTCAGTCTAAGGCCCAAACGGCCCCTAAGGAACATTTGGCTACCCGAATGTTCGTTGAGTGGGGACAGAAGATGGCAGGTGTCGAGAAAATCAAGAAGCATGTGTGGACCAGATTCAAGGACGCTAAATTAGTCGAGTGCCTCGTTCAATTGGTCCACAAGGGTGGTTGGAGGGCAAACAACAATATGTTCGAGGCCGGTTATCTAGCACGATTACACTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATCGACTTGACAATGACGATAGATTGTGAAGTCAAATCCCTAAAGCGGCAGTCCGGTGCAATTGTCGAGATGTTGGGTCCGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATACATGGAGGCTGAGAAAGATGTGTTCAATGTGTGGGTCAAGGTAAGTTATTCATTGCATTCGGCTCCATCACTCCCTCCATTTTTCCTCCCTCCACCTCCCTCCATCTCTCCCTCTAATGATTTACTTTATGATGGCGGCTGCAAAGACGACGACAGTGACGCCGAAGAGGTAGATCGTGGGTGGAGAAGAAAAAATGAGGCATGGGTTGAGGAGCTTTTGCCGTGGTTTGTGCAGTAG MQSPLNVALLLPHVYFQSKAQTAPKEHLATRMFVEWGQKMAGVEKIKKHVWTRFKDAKLVECLVQLVHKGGWRANNNMFEAGYLARLHWMLREKISGCTIDLTMTIDCEVKSLKRQSGAIVEMLGPGCSGFGWNEEYKYMEAEKDVFNVWVKVSYSLHSAPSLPPFFLPPPPSISPSNDLLYDGGCKDDDSDAEEVDRGWRRKNEAWVEELLPWFVQ Homology
BLAST of Spg029050 vs. NCBI nr
Match: KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 140.6 bits (353), Expect = 1.6e-29 Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 0
BLAST of Spg029050 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 139.0 bits (349), Expect = 4.7e-29 Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 0
BLAST of Spg029050 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 136.0 bits (341), Expect = 4.0e-28 Identity = 62/129 (48.06%), Postives = 89/129 (68.99%), Query Frame = 0
BLAST of Spg029050 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 134.0 bits (336), Expect = 1.5e-27 Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 0
BLAST of Spg029050 vs. NCBI nr
Match: KAA0041588.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 133.7 bits (335), Expect = 2.0e-27 Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 0
BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 7.8e-30 Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 0
BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29 Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 0
BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29 Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 0
BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28 Identity = 62/129 (48.06%), Postives = 89/129 (68.99%), Query Frame = 0
BLAST of Spg029050 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 7.3e-28 Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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