Spg029015 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029015
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	amino acid transporter AVT1A-like isoform X3
Location	scaffold5: 15280094 .. 15280983 (+)
RNA-Seq Expression	Spg029015
Synteny	Spg029015

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAATGGCAGCTTGAATTATAAAATAATTGACCAGCTGCCATTGTTGGGCTTCCCTACTCTAAACGCAGAGCTCCAAATAATTTCCATGGCTGAGAAGAAAAACAACCACCACCACGACCAAGATTCAGACTTCTTTTTCGAGCCCCATTACCGTGGCGGCCAAGAAGGAGAAGAAGACGATTTAGAGATGAACTATACGGCAATGGAAAGTGATAGTAGTTCCTCCGGCAGTTTCAACGACGGAGATGACTCCGCCGCCGTGAACGGGTGCTGCCATCCAGGTTGCAGCTCGGCCTCCGCTTCTCAACAATGGCCGCGGAGTTTCAGGTGCGTTTGTTGGTTTCATTAACACAATTATTTATGTTTTTTTATTTTTTTATTATTATTTTTTAGTTTAGAAAGAGAATTTTAAGTTTTTTTTACTAATAACCGATATGTCTATGGTTCAAATCTTCTTAGTTAGAAACAATACATATCAATTATCAACTCAGCCTTACTTTGACAACTATTTATGTTATGTTAATGTTTGTGGACTATGGATATGTTTTTTAGTGGGTTACGGTTCGAAAAATACATTTTTCATTTTTATTTACTTATTTATTTTGTTGATTTCAAAATTTGAGTTCTGTTTCTTCCCCCAAAGGTATTTTTTTTAGCTTAGGAAAAACAAACTTTTAGTTCAACATATGAGATTGATTTTAATTAGGAAAAAACATAGTTGCATATCAATATACAGGAAAGGGATCTCCCTATATACCACCATTAAAATGTTACAACTATGAGAGATAAATTTTTTTTCCTCATTTTCTACCTTTCTCTTTCTTAGTTGTCAAGATTTTAATCGGATATGTAAGGAGATCCCTACATACCGATATGCACCAAAGTAG

mRNA sequence

ATGGCTGAGAAGAAAAACAACCACCACCACGACCAAGATTCAGACTTCTTTTTCGAGCCCCATTACCGTGGCGGCCAAGAAGGAGAAGAAGACGATTTAGAGATGAACTATACGGCAATGGAAAGTGATAGTAGTTCCTCCGGCAGTTTCAACGACGGAGATGACTCCGCCGCCGTGAACGGGTGCTGCCATCCAGGTTGCAGCTCGGCCTCCGCTTCTCAACAATGGCCGCGGAGTTTCAGTTGTCAAGATTTTAATCGGATATGTAAGGAGATCCCTACATACCGATATGCACCAAAGTAG

Coding sequence (CDS)

ATGGCTGAGAAGAAAAACAACCACCACCACGACCAAGATTCAGACTTCTTTTTCGAGCCCCATTACCGTGGCGGCCAAGAAGGAGAAGAAGACGATTTAGAGATGAACTATACGGCAATGGAAAGTGATAGTAGTTCCTCCGGCAGTTTCAACGACGGAGATGACTCCGCCGCCGTGAACGGGTGCTGCCATCCAGGTTGCAGCTCGGCCTCCGCTTCTCAACAATGGCCGCGGAGTTTCAGTTGTCAAGATTTTAATCGGATATGTAAGGAGATCCCTACATACCGATATGCACCAAAGTAG

Protein sequence

MAEKKNNHHHDQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDDSAAVNGCCHPGCSSASASQQWPRSFSCQDFNRICKEIPTYRYAPK

Homology

[Close]

BLAST of Spg029015 vs. NCBI nr
Match: KAG7017638.1 (Amino acid transporter AVT1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 11 DQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDD-SAAVNGCCHPGCSS 70
          DQDS+ F EP Y GGQE +EDD+EMN    ES  SS GSF+DGD+ SAAV+ C   GCSS
Sbjct: 6  DQDSELFLEPPYNGGQENQEDDMEMNNKGTESSGSSCGSFSDGDNSSAAVDSCLRRGCSS 65

Query: 71 ASASQQWPRSFSCQD 85
          ASASQQWP+SFS Q+
Sbjct: 66 ASASQQWPQSFSFQN 80

[Close]

BLAST of Spg029015 vs. NCBI nr
Match: XP_038905343.1 (amino acid transporter AVT1A-like isoform X1 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 55/88 (62.50%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 1  MAEKKNN---HHHDQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDS-SSSGSFNDGDDS 60
          MAEKKNN   ++  QDS+ FFEP Y  GQE +EDD+EMN   ME  S SS  SF+DGDDS
Sbjct: 1  MAEKKNNRPDYYDGQDSELFFEPQYNDGQEDQEDDVEMNNKGMEGSSVSSCSSFSDGDDS 60

Query: 61 ----AAVNGCCHPGCSSASASQQWPRSF 81
              AAVN C   GCSSASASQQWP+SF
Sbjct: 61 TVAVAAVNRCLDRGCSSASASQQWPQSF 88

[Close]

BLAST of Spg029015 vs. NCBI nr
Match: XP_038905344.1 (amino acid transporter AVT1A-like isoform X2 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 55/88 (62.50%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 1  MAEKKNN---HHHDQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDS-SSSGSFNDGDDS 60
          MAEKKNN   ++  QDS+ FFEP Y  GQE +EDD+EMN   ME  S SS  SF+DGDDS
Sbjct: 1  MAEKKNNRPDYYDGQDSELFFEPQYNDGQEDQEDDVEMNNKGMEGSSVSSCSSFSDGDDS 60

Query: 61 ----AAVNGCCHPGCSSASASQQWPRSF 81
              AAVN C   GCSSASASQQWP+SF
Sbjct: 61 TVAVAAVNRCLDRGCSSASASQQWPQSF 88

[Close]

BLAST of Spg029015 vs. NCBI nr
Match: KAG6580882.1 (TGACG-sequence-specific DNA-binding protein 2.1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 7.5e-14
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 11 DQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDD-SAAVNGCCHPGCSS 70
          DQDS+ F EP Y GGQE +EDD+EMN    ES  SS GSF+DGD+ SAAV+ C   GCSS
Sbjct: 6  DQDSELFLEPPYNGGQENQEDDMEMNNKGTESSGSSCGSFSDGDNSSAAVDSCLRRGCSS 65

Query: 71 ASASQQWPRSF 81
          ASASQQWP+SF
Sbjct: 66 ASASQQWPQSF 76

[Close]

BLAST of Spg029015 vs. NCBI nr
Match: XP_023527070.1 (amino acid transporter AVT1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-13
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 11 DQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDD-SAAVNGCCHPGCSS 70
          DQDS+ F EP Y GGQE +EDD+EMN    ES  SS GSF+DGD+ SAAV+ C   GCSS
Sbjct: 6  DQDSELFLEPPYNGGQENQEDDMEMNNKGTESSGSSCGSFSDGDNSSAAVDRCLRRGCSS 65

Query: 71 ASASQQWPRSF 81
          ASASQQWP+SF
Sbjct: 66 ASASQQWPQSF 76

[Close]

BLAST of Spg029015 vs. ExPASy TrEMBL
Match: A0A6J1F8E2 (amino acid transporter AVT1A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441796 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.1e-14
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 11 DQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDD-SAAVNGCCHPGCSS 70
          DQDS+ F +P Y GGQE +EDD+EMN    ES  SS GSF+DGD+ SAAV+ C   GCSS
Sbjct: 6  DQDSELFLQPPYNGGQENQEDDMEMNNKGTESSGSSCGSFSDGDNSSAAVDSCLRRGCSS 65

Query: 71 ASASQQWPRSF 81
          ASASQQWP+SF
Sbjct: 66 ASASQQWPQSF 76

[Close]

BLAST of Spg029015 vs. ExPASy TrEMBL
Match: A0A6J1F2G3 (amino acid transporter AVT1A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441796 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.1e-14
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 11 DQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDD-SAAVNGCCHPGCSS 70
          DQDS+ F +P Y GGQE +EDD+EMN    ES  SS GSF+DGD+ SAAV+ C   GCSS
Sbjct: 6  DQDSELFLQPPYNGGQENQEDDMEMNNKGTESSGSSCGSFSDGDNSSAAVDSCLRRGCSS 65

Query: 71 ASASQQWPRSF 81
          ASASQQWP+SF
Sbjct: 66 ASASQQWPQSF 76

[Close]

BLAST of Spg029015 vs. ExPASy TrEMBL
Match: A0A6J1F3H2 (amino acid transporter AVT1A-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441796 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.1e-14
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 11 DQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDD-SAAVNGCCHPGCSS 70
          DQDS+ F +P Y GGQE +EDD+EMN    ES  SS GSF+DGD+ SAAV+ C   GCSS
Sbjct: 6  DQDSELFLQPPYNGGQENQEDDMEMNNKGTESSGSSCGSFSDGDNSSAAVDSCLRRGCSS 65

Query: 71 ASASQQWPRSF 81
          ASASQQWP+SF
Sbjct: 66 ASASQQWPQSF 76

[Close]

BLAST of Spg029015 vs. ExPASy TrEMBL
Match: A0A6J1J8D0 (amino acid transporter AVT1A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482274 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 11 DQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDD-SAAVNGCCHPGCSS 70
          DQDS+ F EP Y GGQ+ +EDD+EMN    ES  SS GSF+DGD+ SAAV  C   GCSS
Sbjct: 6  DQDSELFLEPPYNGGQQNQEDDMEMNNKGTESSGSSCGSFSDGDNSSAAVARCLRRGCSS 65

Query: 71 ASASQQWPRSF 81
          ASASQQWP++F
Sbjct: 66 ASASQQWPQTF 76

[Close]

BLAST of Spg029015 vs. ExPASy TrEMBL
Match: A0A6J1J395 (amino acid transporter AVT1A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482274 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 11 DQDSDFFFEPHYRGGQEGEEDDLEMNYTAMESDSSSSGSFNDGDD-SAAVNGCCHPGCSS 70
          DQDS+ F EP Y GGQ+ +EDD+EMN    ES  SS GSF+DGD+ SAAV  C   GCSS
Sbjct: 6  DQDSELFLEPPYNGGQQNQEDDMEMNNKGTESSGSSCGSFSDGDNSSAAVARCLRRGCSS 65

Query: 71 ASASQQWPRSF 81
          ASASQQWP++F
Sbjct: 66 ASASQQWPQTF 76

The following BLAST results are available for this feature:

BLAST of Spg029015 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017638.1	1.2e-14	65.33	Amino acid transporter AVT1A, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_038905343.1	2.6e-14	62.50	amino acid transporter AVT1A-like isoform X1 [Benincasa hispida]	[more]
XP_038905344.1	2.6e-14	62.50	amino acid transporter AVT1A-like isoform X2 [Benincasa hispida]	[more]
KAG6580882.1	7.5e-14	66.20	TGACG-sequence-specific DNA-binding protein 2.1, partial [Cucurbita argyrosperma...	[more]
XP_023527070.1	1.3e-13	66.20	amino acid transporter AVT1A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg029015 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8E2	8.1e-14	64.79	amino acid transporter AVT1A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1F2G3	8.1e-14	64.79	amino acid transporter AVT1A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1F3H2	8.1e-14	64.79	amino acid transporter AVT1A-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J8D0	6.8e-13	63.38	amino acid transporter AVT1A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1J395	6.8e-13	63.38	amino acid transporter AVT1A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Spg029015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029015.1	Spg029015.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane