Spg028998 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028998
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold5: 17357298 .. 17359996 (-)
RNA-Seq ExpressionSpg028998
SyntenySpg028998
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGTAGAGATCGAAGAGCAGATGCTCTATTGAGGGTAGTCCCTGATTCGGTATGCTTCTTTGAATCCTACCTTAAAGAGATTGCGACCAAGACAGACAAGATTGATGCGGTAGCTAGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTTGAGAACCTCGAGAGTAAATCTACGAAACCTAGTAGCTTCGAGCATGGGGACAGCTCAACGGACTCTGTTGCCCAGATGGAGGAGCGGCACTGTTGGGGTTTATGTCCTAGAACTCAAGTTTTGTTATCCTTTATATAAATAAAGATGTTATTAAGTGAAAAATGTTTATTTATATATTATAATCCAATAGAAACATTCATGGTTATAACATGAGATACTCGAACTATATCATGAATATGGATAGGGATCAAGTTTGAGTATGTAACCTAAATAGTCTATAGTAAATGAATAAGGTTGGGTACCTTGTTCTGGTAACACTATGGATACGACCTGCTTTGCGAATAAGGCAAACGACGTGATCCTCGATCATTCGTGTAATGACATGCGAGTAGGGCATCCTGTGTAAAAGATGTTTACACAAGACTAGACCGAGAAATAAGTCACTCTTACTTTATAACGTCGTTTACTGTTAAGACTGATTATTTCATGCGATAACCTAAGTAACTCGATCTTAATCCTGAGCTTACTATGAACTCCTGTTCGTTTAAGGTTATCCTTTGATCTGCATGGGTGAGAGTGGTCATAAAAGTACCATTCAATATTCCTACCATTTTGGGGATACACACTAGATGGATGGCTGGGGACATAGTATAGCAAAACGGAATTCACTCCTACCCGATACAGGGATAGTAGAAAGGTTGTCCCCTTAAGTGCTGAGTTTAAGGCTTGAACAAGGGGCCCCACCCTCTCATTGGCCCGAGAGGGATCTTGTTTTATGGCTGGACCATAAACAAATTGTTCAATAGAGGACCATTGGACTTAAGGAACTAAGATGTACTATAGGGGTAAAACAGACATTTGACCTGTCTATAGTAACGAACGACCTGTGAAGGATTGACTTACTAATCATGGTTACATCGAGTGGACGGAAATATATCTACAGTGAGGGGAGTTCAACTACTAGGCTATAGTGGAGTGTCCTGGTAGTTAACGGATGTTGGTTAACTAGGTTAAAAGAGTTTGGCTAGTTTAACCTCGTACCGTTGGAGCCCATGATCTGTAGGTCCATTAGGTCCCCTTGCTAACTCGAGACTAACCTTTGGAACAATATGATGGATAAAATATGAATTACTTTAAGTTCATGTTGAGAAAAATTAGTAGAGGTGATAGGCGTTGTCGGTACGTCGGGTTTTTGTGAAAATCGTGTATGCGAGTATTTAATATTTAAATAAGTGTTGTCGGTACGTCGGGTTTTTGTGAAAACCGTGTATGTGAGTATTTAATATTTAAATATGATTTAAATTCCGAAAACATGAATAGGGATTCATGATTGAAAAAAACATATTGGAAATGTTTGGGAAAGGTGGCAAAATATTAATTTAATATTTAATATTAAATTAATAATTATTTATTTATTTAATAATTATTTAAATTAATTTTGAATTAATTTAAAATTGAAAAATTAAAATTCAATTTTTGATTTTTCAGATTATTGAAAATTGGATAATTATCCAATTAAATTAGGATAATTATTGATTTAATTAAAATCATAAAACATGATTTTTTGGAGGTGGAGTGCATGGTGACTAAACCCATGCACTCCCCTCATGTTGGACACCAAAATTCCCACTACTCCTTGGCTGATTGAGTGTCAATTGTTGGGGCTTTCCTTCATCTTTAATCCCTCTATAAAAGGGAAGAAGATTGTTGAAGAAATGTATCTTGAATTGCTGCCAAATTGAATACTCACCAAATTGAATTGCTGCCAAATTGAATACTCACCAAACCCACCTCCATATGCTTGTTCTTCAAGCTTTCTCTCTTAAATTCCATCACTTGAGGATCCCACAATCCGTTCCAAAGGCTTGAGGATAGCAAGGAAGATCTTTTGGTGGTTCGTGACTCATTGGTGAAGAAAAACAAGAAGGAAATCCAACCAATTTCTCAATTGAAACAAGGTTGGTGATCTGTCTCTGTTTTTCTTCATATGAACAGCATGTCTTAATTGATCAAATTGAGCTTCTTATGTGCCTAAGATCCAAAATTGCTTCCGTTTTATGCCAGACGCAAAGGAGTATTGATAGCGAGCATAGCTAGCTATCTTTACTTATTTAATTTAGCTAGTCTTTGATGATTATTGGCCATTTTATTGCACTTTATTGTTTATTTTGTAGGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGATGCTCGGGACGTGAAAAGATGCAAAGAAATGAAAAAGAATCAAAGAGAAAAAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAGCGTCGAGACGCTGCGACCTTAGCGTCTCGACGCTACGTAATTTCCTTTCCAGAATACGCGTGTTTAGAGGCAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGTTCTTTTCGGCTAGGTTTTTGGGGATTGAATTTTGGGACCTTTGGGGAGCCGTAA

mRNA sequence

ATGGTTGGTAGAGATCGAAGAGCAGATGCTCTATTGAGGGTAGTCCCTGATTCGGTATGCTTCTTTGAATCCTACCTTAAAGAGATTGCGACCAAGACAGACAAGATTGATGCGGTAGCTAGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTTGAGAACCTCGAGAGTAAATCTACGAAACCTAGTAGCTTCGAGCATGGGGACAGCTCAACGGACTCTGTTGCCCAGATGGAGGAGCGGCACTGTTGGGGTTTATGTCCTAGAACTCAAGTTTTGTTATCCTTTGATCTGCATGGGCTTGAGGATAGCAAGGAAGATCTTTTGGTGGTTCGTGACTCATTGGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGATGCTCGGGACGTGAAAAGATGCAAAGAAATGAAAAAGAATCAAAGAGAAAAAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAGCGTCGAGACGCTGCGACCTTAGCGTCTCGACGCTACGTAATTTCCTTTCCAGAATACGCGTGTTTAGAGGCAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGTTCTTTTCGGCTAGGTTTTTGGGGATTGAATTTTGGGACCTTTGGGGAGCCGTAA

Coding sequence (CDS)

ATGGTTGGTAGAGATCGAAGAGCAGATGCTCTATTGAGGGTAGTCCCTGATTCGGTATGCTTCTTTGAATCCTACCTTAAAGAGATTGCGACCAAGACAGACAAGATTGATGCGGTAGCTAGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTTGAGAACCTCGAGAGTAAATCTACGAAACCTAGTAGCTTCGAGCATGGGGACAGCTCAACGGACTCTGTTGCCCAGATGGAGGAGCGGCACTGTTGGGGTTTATGTCCTAGAACTCAAGTTTTGTTATCCTTTGATCTGCATGGGCTTGAGGATAGCAAGGAAGATCTTTTGGTGGTTCGTGACTCATTGGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGATGCTCGGGACGTGAAAAGATGCAAAGAAATGAAAAAGAATCAAAGAGAAAAAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAGCGTCGAGACGCTGCGACCTTAGCGTCTCGACGCTACGTAATTTCCTTTCCAGAATACGCGTGTTTAGAGGCAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGTTCTTTTCGGCTAGGTTTTTGGGGATTGAATTTTGGGACCTTTGGGGAGCCGTAA

Protein sequence

MVGRDRRADALLRVVPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVDWSYSAILELIGCSGREKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVTASRRCDLSVSTLRNFLSRIRVFRGSVSTLRRKISIYSSFRLGFWGLNFGTFGEP
Homology
[Close]
BLAST of Spg028998 vs. NCBI nr
Match: KAA0053384.1 (uncharacterized protein E6C27_scaffold428G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-14
Identity = 56/119 (47.06%), Postives = 71/119 (59.66%), Query Frame = 0 

Query: 15  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSS 74
           VPDS+ F ES LKEIA KTD IDAVA RV+G+ IQEL+ RV+ LE    +  S E GDSS
Sbjct: 7   VPDSIRFLESRLKEIAEKTDMIDAVAGRVEGLSIQELLARVDTLEGTVGRTGSHERGDSS 66

Query: 75  TDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVDWSYSAILELIG 134
           T SVA +EER    L    + LL      LED +  L VV++ +  V+   S  +  +G
Sbjct: 67  TGSVAHIEER-VQELDSSQKALLEIINGMLEDFRATLDVVKNEIAYVNARLSLTMRAMG 124

[Close]
BLAST of Spg028998 vs. NCBI nr
Match: KAA0041962.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-13
Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 0 

Query: 15  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSS 74
           VPDS+ F ES+L+EIA KTD IDA+A RV+G+PIQ+L+ RV+ LE    +  S E GDSS
Sbjct: 28  VPDSIHFLESHLEEIAEKTDMIDAIAGRVEGLPIQKLLARVDTLEGTVGRTGSHERGDSS 87

Query: 75  TDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVDWSYSAILELIGC 134
           T SVA +EER    L    + LL    +  ED    L VVR+ +  V+   S  +  +  
Sbjct: 88  TGSVAHIEER-VQELDSSQKKLLEMINYMSEDFLATLDVVRNEIADVNARLSLTMRAMAN 147

Query: 135 SGR 138
            GR
Sbjct: 148 LGR 149

[Close]
BLAST of Spg028998 vs. NCBI nr
Match: TYK31693.1 (uncharacterized protein E5676_scaffold398G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-13
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 15  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSS 74
           VPDS+ F ES+L+EIA KTD ID VASRV+G+PIQEL+ RV+ LE    +  S + GDSS
Sbjct: 7   VPDSIRFLESHLEEIAEKTDMIDVVASRVEGLPIQELLARVDTLEETVGRTGSHKRGDSS 66

Query: 75  TDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVD 123
            DSVA +EER    L    + LL       ED +  L VVR+ +  V+
Sbjct: 67  RDSVAYIEER-VQELDSSQKTLLEMINDMSEDFRATLNVVRNEIADVN 113

[Close]
BLAST of Spg028998 vs. NCBI nr
Match: KAA0066681.1 (uncharacterized protein E6C27_scaffold271G00090 [Cucumis melo var. makuwa] >TYK27831.1 uncharacterized protein E5676_scaffold384G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-13
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 15  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSS 74
           VPDS+ F ES L+EIA KTD IDAVA RV+G+PIQEL+ RV+ LE    +  S E GDSS
Sbjct: 7   VPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLARVDTLEGTVGRTGSHERGDSS 66

Query: 75  TDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVD 123
           T SVA +EER    L    + LL       ED +  L V+R+ +  V+
Sbjct: 67  TGSVAHIEER-VKELDSSQKTLLEMINGTSEDFRATLDVIRNEIAYVN 113

[Close]
BLAST of Spg028998 vs. NCBI nr
Match: KAA0035434.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK25718.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-13
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 0 

Query: 12  LRVVPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHG 71
           L  VPDS+CF ES LKEIA KTD IDA+ASRV G+PIQEL+ RV+ LE    +  ++E+ 
Sbjct: 4   LAEVPDSICFLESRLKEIAEKTDTIDAIASRVKGLPIQELLARVDTLEGNIGRIVNYEYR 63

Query: 72  DSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVD 123
           DSS+  V  MEER    L    + LL      LED +  + VVR+ +  V+
Sbjct: 64  DSSSGFVTHMEER-VNELDSSQKTLLEMINDMLEDFRATVDVVRNEIADVN 113

[Close]
BLAST of Spg028998 vs. ExPASy TrEMBL
Match: A0A5A7UDT4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00460 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-14
Identity = 56/119 (47.06%), Postives = 71/119 (59.66%), Query Frame = 0 

Query: 15  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSS 74
           VPDS+ F ES LKEIA KTD IDAVA RV+G+ IQEL+ RV+ LE    +  S E GDSS
Sbjct: 7   VPDSIRFLESRLKEIAEKTDMIDAVAGRVEGLSIQELLARVDTLEGTVGRTGSHERGDSS 66

Query: 75  TDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVDWSYSAILELIG 134
           T SVA +EER    L    + LL      LED +  L VV++ +  V+   S  +  +G
Sbjct: 67  TGSVAHIEER-VQELDSSQKALLEIINGMLEDFRATLDVVKNEIAYVNARLSLTMRAMG 124

[Close]
BLAST of Spg028998 vs. ExPASy TrEMBL
Match: A0A5A7TEV3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001730 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.6e-14
Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 0 

Query: 15  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSS 74
           VPDS+ F ES+L+EIA KTD IDA+A RV+G+PIQ+L+ RV+ LE    +  S E GDSS
Sbjct: 28  VPDSIHFLESHLEEIAEKTDMIDAIAGRVEGLPIQKLLARVDTLEGTVGRTGSHERGDSS 87

Query: 75  TDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVDWSYSAILELIGC 134
           T SVA +EER    L    + LL    +  ED    L VVR+ +  V+   S  +  +  
Sbjct: 88  TGSVAHIEER-VQELDSSQKKLLEMINYMSEDFLATLDVVRNEIADVNARLSLTMRAMAN 147

Query: 135 SGR 138
            GR
Sbjct: 148 LGR 149

[Close]
BLAST of Spg028998 vs. ExPASy TrEMBL
Match: A0A5D3E6I8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00590 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 15  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSS 74
           VPDS+ F ES+L+EIA KTD ID VASRV+G+PIQEL+ RV+ LE    +  S + GDSS
Sbjct: 7   VPDSIRFLESHLEEIAEKTDMIDVVASRVEGLPIQELLARVDTLEETVGRTGSHKRGDSS 66

Query: 75  TDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVD 123
            DSVA +EER    L    + LL       ED +  L VVR+ +  V+
Sbjct: 67  RDSVAYIEER-VQELDSSQKTLLEMINDMSEDFRATLNVVRNEIADVN 113

[Close]
BLAST of Spg028998 vs. ExPASy TrEMBL
Match: A0A5A7SVW0 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00080 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 0 

Query: 12  LRVVPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHG 71
           L  VPDS+CF ES LKEIA KTD IDA+ASRV G+PIQEL+ RV+ LE    +  ++E+ 
Sbjct: 4   LAEVPDSICFLESRLKEIAEKTDTIDAIASRVKGLPIQELLARVDTLEGNIGRIVNYEYR 63

Query: 72  DSSTDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVD 123
           DSS+  V  MEER    L    + LL      LED +  + VVR+ +  V+
Sbjct: 64  DSSSGFVTHMEER-VNELDSSQKTLLEMINDMLEDFRATVDVVRNEIADVN 113

[Close]
BLAST of Spg028998 vs. ExPASy TrEMBL
Match: A0A5D3DVV7 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00030 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 15  VPDSVCFFESYLKEIATKTDKIDAVASRVDGMPIQELMMRVENLESKSTKPSSFEHGDSS 74
           VPDS+ F ES L+EIA KTD IDAVA RV+G+PIQEL+ RV+ LE    +  S E GDSS
Sbjct: 7   VPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLARVDTLEGTVGRTGSHERGDSS 66

Query: 75  TDSVAQMEERHCWGLCPRTQVLLSFDLHGLEDSKEDLLVVRDSLEMVD 123
           T SVA +EER    L    + LL       ED +  L V+R+ +  V+
Sbjct: 67  TGSVAHIEER-VKELDSSQKTLLEMINGTSEDFRATLDVIRNEIAYVN 113

The following BLAST results are available for this feature:
BLAST of Spg028998 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053384.14.7e-1447.06uncharacterized protein E6C27_scaffold428G00460 [Cucumis melo var. makuwa][more]
KAA0041962.11.8e-1344.72reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcripta... [more]
TYK31693.12.3e-1349.07uncharacterized protein E5676_scaffold398G00590 [Cucumis melo var. makuwa][more]
KAA0066681.13.0e-1349.07uncharacterized protein E6C27_scaffold271G00090 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0035434.13.0e-1347.75senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK25718... [more]
BLAST of Spg028998 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg028998 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UDT42.3e-1447.06Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TEV38.6e-1444.72Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5D3E6I81.1e-1349.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SVW01.5e-1347.75Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3DVV71.5e-1349.07Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Spg028998 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028998.1Spg028998.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0003824 catalytic activity