Spg028967 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028967
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold5: 14280378 .. 14282498 (+)
RNA-Seq Expression	Spg028967
Synteny	Spg028967

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAATTCGGGACCCTTGATCCCGTAGTGGTTCGATGCCAAAAGGAAGCCACAATGAGGGGATCCCATGGAAAATATGATTCCATTGAGGATGAGAACGAAGGCTGGACCCTTGTCGTGCGTCGCAAAAAGCAAAAGCAAAGTTGTGCACGGAAAGAGTCCCACCTATTTCGAGATAGTAAAAGAAAAGTTATGTCTGAAAGGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCGAGGCGTTTTCTCGATGATAGTCAAGGAGAGGCGCTCGAAACTGTCACGTGTCACGTTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCGAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTAATGCATTGATAGAGTCTGATGGTACAAACATCCCAACCTCCGAGGCGCGCATATGTGCTTCGTGTTGCATGTCTATTGGATTTTCTGATGAAGATTTGCTGCTGGGGTCAAAGCCTCACAATAGACCTCTATTCGTCTCAGGATACATTCGAGAACAGAGGGTTAGTCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTTGATGGAGGAACTATCAAACAGTAAGTTGGTGATCCAAGGCTTCAATCAGGGTGGACAACGGGCGATTGGCATGATACGCCTTGACCTCATCATTGGAGACTTAAAGGCTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCTACATTACACCAGTGCTTCAAATTTTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACTAACCCATTTTCAAAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTCATCTGAAGAATGAAAACACAGGGGAAACCATACCTGCAGAAATCCCTTTGATAAAAAAGAATGATAAACTCGATTTAGAGCCACAAGCAGATGCAAGAAGGGAAGTTGTTGAAGATGCCAGTACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTGTCTCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGACGTTGAAATTTTGAAGGAAAATTTCACTACGCCTCTTACAAAGATCACAAGACAACAGGTTAAGAAACCCGAGCATGATCAGATAAAAGCGATCTTGCCTGATAAACGAACTAAAGACGGGTTTGACCCCAAGGCATACAAACTTCTAGCTAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTTATGACAGATCTGAGCTCTCTGCAACACAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCAACAACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCGGTTCACATAACAAGAAGAGGGAAAGCGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCCTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTTCAACTTCGAATGTCACTCGACCTTCAGCTTTTCAGAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAGAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAAGATGCGATGAAAAATGAAAAGACCACGAAG

mRNA sequence

ATGATTCAATTCGGGACCCTTGATCCCGTAGTGGTTCGATGCCAAAAGGAAGCCACAATGAGGGGATCCCATGGAAAATATGATTCCATTGAGGATGAGAACGAAGGCTGGACCCTTGTCGTGCGTCGCAAAAAGCAAAAGCAAAGTTGTGCACGGAAAGAGTCCCACCTATTTCGAGATAGTAAAAGAAAAGTTATGTCTGAAAGGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCGAGGCGTTTTCTCGATGATAGTCAAGGAGAGGCGCTCGAAACTGTCACGTGTCACGTTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCGAAGCCACAAGCAGATGCAAGAAGGGAAGTTGTTGAAGATGCCAGTACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTGTCTCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCAACAACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCGGTTCACATAACAAGAAGAGGGAAAGCGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCCTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTTCAACTTCGAATGTCACTCGACCTTCAGCTTTTCAGAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAGAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAAGATGCGATGAAAAATGAAAAGACCACGAAG

Coding sequence (CDS)

ATGATTCAATTCGGGACCCTTGATCCCGTAGTGGTTCGATGCCAAAAGGAAGCCACAATGAGGGGATCCCATGGAAAATATGATTCCATTGAGGATGAGAACGAAGGCTGGACCCTTGTCGTGCGTCGCAAAAAGCAAAAGCAAAGTTGTGCACGGAAAGAGTCCCACCTATTTCGAGATAGTAAAAGAAAAGTTATGTCTGAAAGGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCGAGGCGTTTTCTCGATGATAGTCAAGGAGAGGCGCTCGAAACTGTCACGTGTCACGTTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCGAAGCCACAAGCAGATGCAAGAAGGGAAGTTGTTGAAGATGCCAGTACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTGTCTCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCAACAACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCGGTTCACATAACAAGAAGAGGGAAAGCGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCCTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTTCAACTTCGAATGTCACTCGACCTTCAGCTTTTCAGAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAGAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAAGATGCGATGAAAAATGAAAAGACCACGAAG

Protein sequence

MIQFGTLDPVVVRCQKEATMRGSHGKYDSIEDENEGWTLVVRRKKQKQSCARKESHLFRDSKRKVMSERKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHVVDVVEDDDVPASSSGTMAKPQADARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNMPIGEEESTFSTSDVTRPSVFQRLSVTTRRDKREQSASSISHRLQYEDAMKNEKTTK

Homology

[Close]

BLAST of Spg028967 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 2.2e-40
Identity = 103/214 (48.13%), Postives = 135/214 (63.08%), Query Frame = 0


Query: 146 ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 205
           A +E  +   T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  +
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 206 SIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVE 265
            +K             KKLL+EG+ +P +RKG GYKSPEP+HI R+ K KV D+NHITV 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 266 EVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLS 325
           EVD  +EKE   QR S F +IRP V R  VF+RLSV +TE +  Q T+S  + S  +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235

Query: 326 MPIGEEESTFSTSNVTRPSAFQRLNMPIGEEEST 347
           M   +E+ T      TRPSAF+RL++   ++  T
Sbjct: 236 MTFKKEKCTCQALRATRPSAFERLSVAKQKDAQT 269

[Close]

BLAST of Spg028967 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 2.2e-40
Identity = 107/236 (45.34%), Postives = 137/236 (58.05%), Query Frame = 0


Query: 146 ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 205
           A +E  +   T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 206 SIK-------------------------------------------KKLLKEGYSLPTTR 265
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 266 KGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALV 325
           KGLGYKSPEP+ ITR+GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 326 FQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM 339
           F+RLS+ E + +  Q T++  R S F+RL++   EE+    TS  T+PSAF+RL++
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSI 423

[Close]

BLAST of Spg028967 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 2.8e-40
Identity = 149/488 (30.53%), Postives = 203/488 (41.60%), Query Frame = 0


Query: 15  QKEATMRGSHGKYDSIEDENEGWTLVVRRKKQKQSCARKESHLFRDSKRKVMSERKKGKK 74
           ++E T   S  K   IE+++EGWT+V RRKK+K +  +KES L+ + +R   +++ K KK
Sbjct: 459 EEEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKK 518

Query: 75  KSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVT--------------- 134
           K+R+ K V E+ +DF    + +TLA++FP RFL D Q E    V                
Sbjct: 519 KTRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYEST 578

Query: 135 --CHVVDVVEDD------------------------------------------------ 194
             C  +D  ++D                                                
Sbjct: 579 PYCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGIL 638

Query: 195 ---------------------------------------DVPASSSGTMAKPQADARREV 254
                                                  +VP  +     + ++ A RE 
Sbjct: 639 MEELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRES 698

Query: 255 VEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-- 314
            +   T    K EASTS  K  +V DEK SN PILRYVPLSRRKKGESPF E  + +K  
Sbjct: 699 HKSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVG 758

Query: 315 ------------------------------------------------------------ 322
                                                                       
Sbjct: 759 DIEVLKESFTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEF 818

[Close]

BLAST of Spg028967 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 2.4e-39
Identity = 107/246 (43.50%), Postives = 138/246 (56.10%), Query Frame = 0


Query: 146 ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 205
           A +E  +   T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211

Query: 206 SIK-----------------------------------------------------KKLL 265
            +K                                                     KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271

Query: 266 KEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRR 325
           +EG+ +P +RKGLGYKSPEP+ ITR+GK KV D+NHITV+EVD  +EKE  +QRTS F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331

Query: 326 IRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSA 339
           I P VARA VF+RLS+ E E +  Q T++  + S F+RL++   EE+    TS  T+PSA
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391

[Close]

BLAST of Spg028967 vs. NCBI nr
Match: KAA0047672.1 (uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK08327.1 uncharacterized protein E5676_scaffold648G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-38
Identity = 108/240 (45.00%), Postives = 141/240 (58.75%), Query Frame = 0


Query: 146 ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 205
           A R+  +   T    K EASTS  K  ++ +E  SN PILRYVPLSR KKGESPF E  +
Sbjct: 689 ASRKPHKSTETFHSGKNEASTSTAKSVILMNENTSNPPILRYVPLSRCKKGESPFVESPQ 748

Query: 206 SIKK---KLLKEGYSL---PTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKE 265
            +K    ++LKE +++     T+KGLGYKSPEP+ ITR+GK KV D+NHITV+EVD  + 
Sbjct: 749 GLKVGDIEVLKESFTIQLTKITKKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEG 808

Query: 266 KESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEE 325
           KE   QRTS F RI P VARA VF+RLS+ E + +  Q                      
Sbjct: 809 KEGHSQRTSAFDRISPHVARAPVFERLSMTEAKRKDHQ---------------------- 868

Query: 326 STFSTSNVTRPSAFQRLNMPIGEEESTFSTSDVTRPSVFQRLSVTTRRDKREQSASSISH 380
              STSN+ R SAFQRL +   EE+     S  T+PS F+RLS+T +++ +   A  I+H
Sbjct: 869 ---STSNLDRRSAFQRLTITFKEEKGICQASMTTKPSAFERLSITKKKNAQTPRAPIINH 903

[Close]

BLAST of Spg028967 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-40
Identity = 107/236 (45.34%), Postives = 137/236 (58.05%), Query Frame = 0


Query: 146 ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 205
           A +E  +   T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 206 SIK-------------------------------------------KKLLKEGYSLPTTR 265
            +K                                           KKLL+EG+ +P +R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 266 KGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALV 325
           KGLGYKSPEP+ ITR+GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

Query: 326 FQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM 339
           F+RLS+ E + +  Q T++  R S F+RL++   EE+    TS  T+PSAF+RL++
Sbjct: 368 FERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSI 423

[Close]

BLAST of Spg028967 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-40
Identity = 103/214 (48.13%), Postives = 135/214 (63.08%), Query Frame = 0


Query: 146 ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 205
           A +E  +   T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  +
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 206 SIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVE 265
            +K             KKLL+EG+ +P +RKG GYKSPEP+HI R+ K KV D+NHITV 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 266 EVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLS 325
           EVD  +EKE   QR S F +IRP V R  VF+RLSV +TE +  Q T+S  + S  +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235

Query: 326 MPIGEEESTFSTSNVTRPSAFQRLNMPIGEEEST 347
           M   +E+ T      TRPSAF+RL++   ++  T
Sbjct: 236 MTFKKEKCTCQALRATRPSAFERLSVAKQKDAQT 269

[Close]

BLAST of Spg028967 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-40
Identity = 149/488 (30.53%), Postives = 203/488 (41.60%), Query Frame = 0


Query: 15  QKEATMRGSHGKYDSIEDENEGWTLVVRRKKQKQSCARKESHLFRDSKRKVMSERKKGKK 74
           ++E T   S  K   IE+++EGWT+V RRKK+K +  +KES L+ + +R   +++ K KK
Sbjct: 459 EEEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKK 518

Query: 75  KSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVT--------------- 134
           K+R+ K V E+ +DF    + +TLA++FP RFL D Q E    V                
Sbjct: 519 KTRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYEST 578

Query: 135 --CHVVDVVEDD------------------------------------------------ 194
             C  +D  ++D                                                
Sbjct: 579 PYCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGIL 638

Query: 195 ---------------------------------------DVPASSSGTMAKPQADARREV 254
                                                  +VP  +     + ++ A RE 
Sbjct: 639 MEELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRES 698

Query: 255 VEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-- 314
            +   T    K EASTS  K  +V DEK SN PILRYVPLSRRKKGESPF E  + +K  
Sbjct: 699 HKSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVG 758

Query: 315 ------------------------------------------------------------ 322
                                                                       
Sbjct: 759 DIEVLKESFTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEF 818

[Close]

BLAST of Spg028967 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-39
Identity = 107/246 (43.50%), Postives = 138/246 (56.10%), Query Frame = 0


Query: 146 ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 205
           A +E  +   T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKGESPF E  +
Sbjct: 152 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 211

Query: 206 SIK-----------------------------------------------------KKLL 265
            +K                                                     KKLL
Sbjct: 212 GLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLL 271

Query: 266 KEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRR 325
           +EG+ +P +RKGLGYKSPEP+ ITR+GK KV D+NHITV+EVD  +EKE  +QRTS F R
Sbjct: 272 REGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDR 331

Query: 326 IRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSA 339
           I P VARA VF+RLS+ E E +  Q T++  + S F+RL++   EE+    TS  T+PSA
Sbjct: 332 ISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKPSA 391

[Close]

BLAST of Spg028967 vs. ExPASy TrEMBL
Match: A0A5D3C8N8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001250 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-38
Identity = 108/240 (45.00%), Postives = 141/240 (58.75%), Query Frame = 0


Query: 146 ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSE 205
           A R+  +   T    K EASTS  K  ++ +E  SN PILRYVPLSR KKGESPF E  +
Sbjct: 689 ASRKPHKSTETFHSGKNEASTSTAKSVILMNENTSNPPILRYVPLSRCKKGESPFVESPQ 748

Query: 206 SIKK---KLLKEGYSL---PTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKE 265
            +K    ++LKE +++     T+KGLGYKSPEP+ ITR+GK KV D+NHITV+EVD  + 
Sbjct: 749 GLKVGDIEVLKESFTIQLTKITKKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEG 808

Query: 266 KESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEE 325
           KE   QRTS F RI P VARA VF+RLS+ E + +  Q                      
Sbjct: 809 KEGHSQRTSAFDRISPHVARAPVFERLSMTEAKRKDHQ---------------------- 868

Query: 326 STFSTSNVTRPSAFQRLNMPIGEEESTFSTSDVTRPSVFQRLSVTTRRDKREQSASSISH 380
              STSN+ R SAFQRL +   EE+     S  T+PS F+RLS+T +++ +   A  I+H
Sbjct: 869 ---STSNLDRRSAFQRLTITFKEEKGICQASMTTKPSAFERLSITKKKNAQTPRAPIINH 903

The following BLAST results are available for this feature:

BLAST of Spg028967 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043405.1	2.2e-40	48.13	hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]	[more]
KAA0055957.1	2.2e-40	45.34	uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]	[more]
KAA0061113.1	2.8e-40	30.53	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
TYK28162.1	2.4e-39	43.50	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]
KAA0047672.1	3.5e-38	45.00	uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Spg028967 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028967 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMY2	1.0e-40	45.34	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TPR5	1.0e-40	48.13	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BY54	1.4e-40	30.53	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DXC7	1.2e-39	43.50	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C8N8	1.7e-38	45.00	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00125...	[more]

BLAST of Spg028967 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 363..394
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028967.1	Spg028967.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process