Spg028905 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028905
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold5: 14619828 .. 14622375 (+)
RNA-Seq ExpressionSpg028905
SyntenySpg028905
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGAGTACGAGAGCGTTAAACGAGATCGTGTATCGGGAGTAGGAATCCATAAGGCTGTGTTGGAGGGGCAAGGCGGTCATAAAGTGTGCGCGATGACATCAACAAAAGGACATTCTCCACATTCTGAAAAGGTAGGGCAAATTTCATTAGGGCTCCCGAAAATGGGTCATCCGTACAAATTTCCCAACTTTATATTATAACGTATCATCATACATTACATTAATTCCCTTAACAAATTTAAACATTTCAAATTCCATTCAAGACTATATTACCTCAATACCATTTACGAGCTAGCAAGAAGACCTAATAGACTTACAAATCAGAAGCTCCAACGATACGAGATCAATTGTCTAAACTCATTAACCACATTAATCAACATTCTTTAACTGTGGGACACTCCACTAAAGACCCACAACTGCACTCTTCTCATTGTAGAATATTTCTGTGTCCACGGATATTGACCAATAATAGAAAATCAGTCCTTCACGAGTGTTCGTAACACCAGTTGGGTCAAATTATGGTTTTACCCCTGGATTACCTCTGTGTCCTTTAGTACCAGTGCTCCTCTAATGAACAACTTGTTTATGGTCCTACCATTAAACAGAAGTCCCTCTCGAGCCAATGAGAGGGTCGGGTCCTTTGTTCAAATCTCGGAGACACCACTTGAAACACTCATCTACTTACCCTAAAGGCGGGAAGGAGTGAATTCCATATTGTGTTGTTATGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGATAGGCTTATATTGAGTCGGTGATCTGGTCACTCTCACCCATACAAATCAAAGGACAATCCCTTGTAGACAAAAGTCCATAATACACTTAGGATTGAGACTAAAGTTGCCTAGGTCATCCTACTAAAATAATAACCTAATTAGTTAATGGTTTTATATCTAATGGTTACTATTTCGTGGTTTGGTCTTATGCAAGCTCATTGCATAGGATACCCCCACTCGCATGTCCACAACACGAACACGTTGGATCATTTTGCGTTTGTATCAAATACAAAGCGAGTCGTATCCATAGTGATCACCAGGATAAGGTACCCAATCTTATCCCTATACTATAGACCCTTTACGTTGTTTCTTGAATATTGATCCCCGTATGTCCACTACATACTGTTCAAACTACATTATACAACCTAGGATGTTAGTTTATTGGATTTAGGGTTATATAATTCAAATCTGATACAACACATTCAACAGTCACATATTGAATAACCTCAATAACATATTATTGATAATATCAAAATGTTTACATTTACTATCCACGAGTTTTAGGGCATAAAACCTAACAGTAATCACATCCATGAATTTTTAATTTGATCAATCAATCATCTATTGTTGGTTAAGTGTTGCAATCAACTCTTGTACTTTTTAAGTGTTGCAATAAACTTCTCGTTTATTTTTTAAAATATACAACTAATAAAAGGCTGATTGCAACGGAGGATTGATTGATCAAATAAAAAGTTAAGGGTGTGATTGTAACAAACCCCATAGTTCAAGGGTAGTTTGTGTAATTTTTCCTAAAATTATTTAATAACAATATGTAGACTACATAAAGACACATATTTTATTTATTTTTTGGATGATCGAATGTCTACATAGATAAATATTGAAAAGCTACCTCTGGTAAGAAAAATGTTAGGCTTAAAACATATTTATTTATTTATTTAATTTTATTAAATGACTTGTTATCCCTAATGATAGATGAAGACTTTCAAATATAAAAAGAAAGTAAATATAGGACACATAAAGTTGAGATTGCACATAGAATCATTACTAATTAGTATTATTAATTTCAAATAGGGATGAGATTAAGTTCAATTAAGTGAATCAAGACATTTTGAGATGCTTAGTGGGTTCTGAATATGACTCATTCCTATGTAGAAAATGAAGACAAAATATTTATAATATATTTCCAAACCTCCAACCCCACCTACCTAATAAGTTGATTCCTTTGCTTTCACCCTTCAAGTTCATGTTTCCTTCTGGAGACCCAAAGTAGATAGCCCAAAAAAAAAAAATGGAGGAAGCTTTCAGTGGCTGCAACAATGGCAGATCTCGGTGAACCGTGACAGCGGAGTCGACCGCGGACAGTGGTTTTTTCTTTTTTCTTTTTTCCTTTGGATGTTGCAGACCATCGAGTGCGAAACGCTGTTTCAGACGTTTCCACTCCTGTCCTTGCAGTAAAGAGGTTTCAGTCAAGAGTTTTCTTTGGTAACGTAAGATTAAATTGTAAAAAGAATCATACGAATTATTTCTTTTCGCTATCGCCTTCTTTGGCCAGATCTTTCGACGGCGGTTGACATAGAAGGGAGGGTAACCATTTTTTTGATGGTCAATTATTGTAGCCTGAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTCTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTCCCTCCGCCGCCGTTGGCGGTTCTCGGTCTGCCGATCTTGATTCTGGTTGTTTTGTTGTTCTTTGCTTTCTCTTCTTCTCATCAGATCCCTAA

mRNA sequence

ATGTTCGAGTACGAGAGCGTTAAACGAGATCGTGTATCGGGAGTAGGAATCCATAAGGCTGTGTTGGAGGGGCAAGGCGGTCATAAAGTGTGCGCGATGACATCAACAAAAGGACATTCTCCACATTCTGAAAAGGATACCCCCACTCGCATGTCCACAACACGAACACACCATCGAGTGCGAAACGCTGTTTCAGACGTTTCCACTCCTGTCCTTGCAGTAAAGAGGTTTCAGTCAAGAGTTTTCTTTGGTAACCCTGAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTCTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTCCCTCCGCCGCCGTTGGCGGTTCTCGGTCTGCCGATCTTGATTCTGGTTGTTTTGTTGTTCTTTGCTTTCTCTTCTTCTCATCAGATCCCTAA

Coding sequence (CDS)

ATGTTCGAGTACGAGAGCGTTAAACGAGATCGTGTATCGGGAGTAGGAATCCATAAGGCTGTGTTGGAGGGGCAAGGCGGTCATAAAGTGTGCGCGATGACATCAACAAAAGGACATTCTCCACATTCTGAAAAGGATACCCCCACTCGCATGTCCACAACACGAACACACCATCGAGTGCGAAACGCTGTTTCAGACGTTTCCACTCCTGTCCTTGCAGTAAAGAGGTTTCAGTCAAGAGTTTTCTTTGGTAACCCTGAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTCTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTCCCTCCGCCGCCGTTGGCGGTTCTCGGTCTGCCGATCTTGATTCTGGTTGTTTTGTTGTTCTTTGCTTTCTCTTCTTCTCATCAGATCCCTAA

Protein sequence

MFEYESVKRDRVSGVGIHKAVLEGQGGHKVCAMTSTKGHSPHSEKDTPTRMSTTRTHHRVRNAVSDVSTPVLAVKRFQSRVFFGNPEFSDGFTSVDSFSASVASGGAAAPSAAVGGSRSADLDSGCFVVLCFLFFSSDP
Homology
[Close]
BLAST of Spg028905 vs. NCBI nr
Match: XP_008443266.1 (PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 uncharacterized protein E6C27_scaffold135G002710 [Cucumis melo var. makuwa] >TYK25526.1 uncharacterized protein E5676_scaffold352G006780 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 87  EFSDGFTSVDSFSASVASGGAAAPSAAVGGSRSADLDSGCFVVLCFLFFSSDP 140
           +FSDGFT VDSF ASVA+GGAAA S  VG SR+A  D GCFVVL FLFFSS P
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

[Close]
BLAST of Spg028905 vs. ExPASy TrEMBL
Match: A0A0A0LBQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 87  EFSDGFTSVDSFSASVASGGAAAPSAAVGGSRSADLDSGCFVVLCFLFFSSDP 140
           +FSDGFTSVDSF ASVA+GGAAA SA VG SR+A  D GCFVVL FLFFS+DP
Sbjct: 43  KFSDGFTSVDSFFASVATGGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP 95

[Close]
BLAST of Spg028905 vs. ExPASy TrEMBL
Match: A0A5D3DPE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006780 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 87  EFSDGFTSVDSFSASVASGGAAAPSAAVGGSRSADLDSGCFVVLCFLFFSSDP 140
           +FSDGFT VDSF ASVA+GGAAA S  VG SR+A  D GCFVVL FLFFSS P
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

[Close]
BLAST of Spg028905 vs. ExPASy TrEMBL
Match: A0A1S3B754 (uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 87  EFSDGFTSVDSFSASVASGGAAAPSAAVGGSRSADLDSGCFVVLCFLFFSSDP 140
           +FSDGFT VDSF ASVA+GGAAA S  VG SR+A  D GCFVVL FLFFSS P
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

The following BLAST results are available for this feature:
BLAST of Spg028905 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443266.11.3e-0873.58PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 unc... [more]
BLAST of Spg028905 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg028905 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBQ92.6e-1077.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1[more]
A0A5D3DPE06.4e-0973.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7546.4e-0973.58uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=... [more]
BLAST of Spg028905 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028905.1Spg028905.1mRNA