Spg028757 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028757
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	proline-rich family protein
Location	scaffold7: 14388240 .. 14388623 (-)
RNA-Seq Expression	Spg028757
Synteny	Spg028757

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATCCAAAGGCGCCCTTGTTATGCTCTAGCAATCCTCATCAACTTGTTCTTGATTCTTTCAATCAATGTGGTAACCATCCATGGCTTGATCTCTTCCAAGAAGCTTGACGAGGCGACCGGTGGCGACGATTCGAGTGTCAAGTGTACGCCGTGCACCCGTTATCCACCACCGCCACCTCCGCCGCCTCCACCAAAGAAACCGCCATCGACGTACTGCCCTCCGCCACCGTCTCCTCCGTCGTCTTTCATTTACGTGCTCGGCCCGCCGGGAAACTTGTATCCCATTGACCAAGACTTCGCCGGCGCCCGGAGGAAGATGGCCGTGGAGTTGCCGGTGGTTGCTCTCTTTGGACTGATTGGTTTCATTGCTTTGTGGTGA

mRNA sequence

ATGTTCATCCAAAGGCGCCCTTGTTATGCTCTAGCAATCCTCATCAACTTGTTCTTGATTCTTTCAATCAATGTGGTAACCATCCATGGCTTGATCTCTTCCAAGAAGCTTGACGAGGCGACCGGTGGCGACGATTCGAGTGTCAAGTGTACGCCGTGCACCCGTTATCCACCACCGCCACCTCCGCCGCCTCCACCAAAGAAACCGCCATCGACGTACTGCCCTCCGCCACCGTCTCCTCCGTCGTCTTTCATTTACGTGCTCGGCCCGCCGGGAAACTTGTATCCCATTGACCAAGACTTCGCCGGCGCCCGGAGGAAGATGGCCGTGGAGTTGCCGGTGGTTGCTCTCTTTGGACTGATTGGTTTCATTGCTTTGTGGTGA

Coding sequence (CDS)

ATGTTCATCCAAAGGCGCCCTTGTTATGCTCTAGCAATCCTCATCAACTTGTTCTTGATTCTTTCAATCAATGTGGTAACCATCCATGGCTTGATCTCTTCCAAGAAGCTTGACGAGGCGACCGGTGGCGACGATTCGAGTGTCAAGTGTACGCCGTGCACCCGTTATCCACCACCGCCACCTCCGCCGCCTCCACCAAAGAAACCGCCATCGACGTACTGCCCTCCGCCACCGTCTCCTCCGTCGTCTTTCATTTACGTGCTCGGCCCGCCGGGAAACTTGTATCCCATTGACCAAGACTTCGCCGGCGCCCGGAGGAAGATGGCCGTGGAGTTGCCGGTGGTTGCTCTCTTTGGACTGATTGGTTTCATTGCTTTGTGGTGA

Protein sequence

MFIQRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPPPPPPPPKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGARRKMAVELPVVALFGLIGFIALW

Homology

[Close]

BLAST of Spg028757 vs. NCBI nr
Match: XP_022155381.1 (acrosin-like [Momordica charantia])

HSP 1 Score: 181.8 bits (460), Expect = 3.7e-42
Identity = 95/114 (83.33%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 14  LINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPPPPPPPPKKPPSTY 73
           ++NL LILSINVVTIHGLISS KLD +TGG DS+VKCTPCTRY PPPPPPPPPKKPPS+Y
Sbjct: 7   ILNLLLILSINVVTIHGLISSNKLDGSTGG-DSTVKCTPCTRYNPPPPPPPPPKKPPSSY 66

Query: 74  CPPPPSPPSSFIYVLGPPGNLYPIDQDFAGARRKMAVELPVVALFGLIGFIALW 128
           CPPPP PPSSFIY+LGPPGNLYPI QDFAG RR++AVELPVVAL GL+GFIA+W
Sbjct: 67  CPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRRVAVELPVVALLGLMGFIAVW 119

[Close]

BLAST of Spg028757 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 93/127 (73.23%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 1   MFIQRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPP 60
           M IQ RP YAL IL   F  LS NVV  HG +SSKKLDE+TGGDD SVKCTPCT    PP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTH--NPP 60

Query: 61  PPPPPPKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGA-RRKMAVELPVVALFG 120
           PPPPPPKKP   YCPPPP PPSSFIY+LGPPGNLYPID+DFAGA RR++AVEL  VALFG
Sbjct: 61  PPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFG 120

Query: 121 LIGFIAL 127
           LIGF+ +
Sbjct: 121 LIGFLGV 125

[Close]

BLAST of Spg028757 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 92/127 (72.44%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 1   MFIQRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPP 60
           M IQ RP YAL I       LSINVV  HG +SSKKLDE+TGGDD SVKCTPCT    PP
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTH--NPP 60

Query: 61  PPPPPPKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGA-RRKMAVELPVVALFG 120
           PPPPPPKKP   YCPPPP PPSSFIY+LGPPGNLYPID+DFAGA RR++AVEL  VALFG
Sbjct: 61  PPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFG 120

Query: 121 LIGFIAL 127
           LIGF+ +
Sbjct: 121 LIGFLGV 125

[Close]

BLAST of Spg028757 vs. NCBI nr
Match: KAG7031461.1 (hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 8.8e-36
Identity = 92/127 (72.44%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 1   MFIQRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPP 60
           M IQ RP YAL I   LF +LSINVV  HG +SSKKLDE+TGGDD  VKCTPCT    PP
Sbjct: 1   MCIQTRPRYALFIFSFLF-VLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTH--NPP 60

Query: 61  PPPPPPKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGA-RRKMAVELPVVALFG 120
           PPPPPPKKP   YCPPPP PPSSFIY+LGPPGNLYPID+DFAGA RR++ VEL  VALFG
Sbjct: 61  PPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFG 120

Query: 121 LIGFIAL 127
           LIGF+ +
Sbjct: 121 LIGFLGV 124

[Close]

BLAST of Spg028757 vs. NCBI nr
Match: KAG6600825.1 (hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.6 bits (405), Expect = 8.8e-36
Identity = 90/127 (70.87%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 1   MFIQRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPP 60
           M IQ RP YAL  + + F +LSINVV  HG +SSKKLDE+TGGDD  VKCTPCT    PP
Sbjct: 1   MCIQTRPRYAL-FIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTH--NPP 60

Query: 61  PPPPPPKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGA-RRKMAVELPVVALFG 120
           PPPPPPKKP   YCPPPP PPSSFIY+LGPPGNLYPID+DFAGA RR++ VEL  VALFG
Sbjct: 61  PPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFG 120

Query: 121 LIGFIAL 127
           LIGF+ +
Sbjct: 121 LIGFLGV 124

[Close]

BLAST of Spg028757 vs. ExPASy TrEMBL
Match: A0A6J1DRJ1 (acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 95/114 (83.33%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 14  LINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPPPPPPPPKKPPSTY 73
           ++NL LILSINVVTIHGLISS KLD +TGG DS+VKCTPCTRY PPPPPPPPPKKPPS+Y
Sbjct: 7   ILNLLLILSINVVTIHGLISSNKLDGSTGG-DSTVKCTPCTRYNPPPPPPPPPKKPPSSY 66

Query: 74  CPPPPSPPSSFIYVLGPPGNLYPIDQDFAGARRKMAVELPVVALFGLIGFIALW 128
           CPPPP PPSSFIY+LGPPGNLYPI QDFAG RR++AVELPVVAL GL+GFIA+W
Sbjct: 67  CPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRRVAVELPVVALLGLMGFIAVW 119

[Close]

BLAST of Spg028757 vs. ExPASy TrEMBL
Match: A0A6J1FVH5 (probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.7e-37
Identity = 93/127 (73.23%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 1   MFIQRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPP 60
           M IQ RP YAL IL   F  LS NVV  HG +SSKKLDE+TGGDD SVKCTPCT    PP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTH--NPP 60

Query: 61  PPPPPPKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGA-RRKMAVELPVVALFG 120
           PPPPPPKKP   YCPPPP PPSSFIY+LGPPGNLYPID+DFAGA RR++AVEL  VALFG
Sbjct: 61  PPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFG 120

Query: 121 LIGFIAL 127
           LIGF+ +
Sbjct: 121 LIGFLGV 125

[Close]

BLAST of Spg028757 vs. ExPASy TrEMBL
Match: A0A0A0KSV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.3e-34
Identity = 92/127 (72.44%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MFIQRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPP 60
           M IQ  P Y+L IL + FLILSIN+  IHG ISSKKLDE     DSSVKCTPCTRY   P
Sbjct: 1   MCIQPHPFYSLLIL-HFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRY--SP 60

Query: 61  PPPPPPKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGA-RRKMAVELPVVALFG 120
           PPPPPPKKPP  YCPPPP PPSSFIY+LGPP NLYPI+ DFA A RR +A+ELPVVA FG
Sbjct: 61  PPPPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFG 120

Query: 121 LIGFIAL 127
           LIG IAL
Sbjct: 121 LIGLIAL 124

[Close]

BLAST of Spg028757 vs. ExPASy TrEMBL
Match: A0A067FBM4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0324291mg PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 71/145 (48.97%), Postives = 90/145 (62.07%), Query Frame = 0


Query: 1   MFIQRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTP-CTRYPPP 60
           M IQ+     L +L    L+ +I    ++GL  S+KLDE+TG  D  +KCTP CT+ PPP
Sbjct: 1   MSIQKCLFSPLKVLTIFSLLAAIVYHPVNGL-ESRKLDESTG--DQGIKCTPSCTQSPPP 60

Query: 61  P--------PPPPP---------PKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFA 120
           P        PPPPP         PKKPPS YCPPP  PP SFIY+ GPPGNLYP+D DF 
Sbjct: 61  PSPSPPPPYPPPPPALPPPAPPAPKKPPSQYCPPP--PPPSFIYITGPPGNLYPVDSDFN 120

Query: 121 GARRKMAVELPVVALFGLIGFIALW 128
           GA +K+   LP++   G++GF+ALW
Sbjct: 121 GASKKIPSSLPLLVASGILGFLALW 140

[Close]

BLAST of Spg028757 vs. ExPASy TrEMBL
Match: A5B8N9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.2e-19
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 14  LINLFLILSINVVTIHGLISSKKLDE--ATGGDDSSVKC-------TPCTRYPPPPP--- 73
           L+ +FL+++     ++G  +S+KLDE  A+G  D+ VKC        PC + PPPPP   
Sbjct: 13  LLTVFLVVAAIATPVNG-SNSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPPPPS 72

Query: 74  PPPPPKKPPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGARRKMAVELPVVALFGLI 127
           PPPPPKKP + YCPPPP PP+SF+YV GPPG LYPIDQD+ GA R   V LP++A  GL+
Sbjct: 73  PPPPPKKPRAPYCPPPPPPPASFLYVTGPPGTLYPIDQDYGGAGRNFMVGLPILAGCGLL 132

[Close]

BLAST of Spg028757 vs. TAIR 10
Match: AT1G70990.1 (proline-rich family protein )

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-12
Identity = 50/132 (37.88%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 4   QRRPCYALAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPPPPP 63
           +R    A  +L  +  +    ++      +++KL+E        +KCTPC +  PPP PP
Sbjct: 44  RRTKALAATLLTTVVFLTFPMIINASDSSTNRKLEE------DPIKCTPCLQNIPPPSPP 103

Query: 64  PPPKKPPSTYCPPP------------PSPPSSFIYVLGPPGNLYPIDQDFAGARRKMAVE 123
           PP   PPS  CPPP            P PPS++IY+ GPPG LYPIDQ F  A  K    
Sbjct: 104 PPSPPPPSQACPPPPLPPSPPKKSYCPPPPSTYIYMTGPPGELYPIDQQFGAAVTK---S 163

[Close]

BLAST of Spg028757 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-12
Identity = 53/134 (39.55%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 17  LFLILSINVVT----IHGLISSKKLDEATGGDD-SSVKCTP-CTRYPPPPPPPPPPKKPP 76
           +F ++ I ++T    I+G  SS    EA   D+   +KC+P C + PPPP PPPP   PP
Sbjct: 13  IFTVMMIALLTCPTLINGSSSSDASLEARKLDEVDPIKCSPSCIQNPPPPSPPPPSPPPP 72

Query: 77  ----------------STYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGARRK--MAVEL 127
                           S+YCPPP  PP++F+Y+ GPPGNLYP+D+ F  A  K  M V+L
Sbjct: 73  ACPPPPALPPPPPKKVSSYCPPP--PPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKL 132

[Close]

BLAST of Spg028757 vs. TAIR 10
Match: AT1G02405.1 (proline-rich family protein )

HSP 1 Score: 45.1 bits (105), Expect = 5.0e-05
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 11  LAILINLFLILSINVVTIHGLISSKKLDEATGGDDSSVKCTPCTRYPPPPPP-------- 70
           LA  I + +++  + + I+   SS ++D         V C PC +  PPPPP        
Sbjct: 11  LAATILMAIVILASPIIINAEDSSAEVD---------VNCIPCLQNQPPPPPSPPPPSCT 70

Query: 71  -------PPPPKK---PPSTYCPPPPSPPSSFIYVLGPPGNLYPIDQDFAGARRKMAVEL 127
                  PPPPKK   PPS   PPPP PP ++++   PPG+LYPI+  +  A    +  +
Sbjct: 71  PSPPPPSPPPPKKSSCPPSPLPPPPPPPPPNYVFTY-PPGDLYPIENYYGAAVAVESFSV 130

The following BLAST results are available for this feature:

BLAST of Spg028757 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155381.1	3.7e-42	83.33	acrosin-like [Momordica charantia]	[more]
XP_022942055.1	3.6e-37	73.23	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
XP_023546806.1	1.4e-36	72.44	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
KAG7031461.1	8.8e-36	72.44	hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600825.1	8.8e-36	70.87	hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg028757 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRJ1	1.8e-42	83.33	acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1	[more]
A0A6J1FVH5	1.7e-37	73.23	probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=...	[more]
A0A0A0KSV7	2.3e-34	72.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
A0A067FBM4	2.1e-19	48.97	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0324291mg PE=4 SV=...	[more]
A5B8N9	6.2e-19	50.40	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=...	[more]

BLAST of Spg028757 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70990.1	7.3e-12	37.88	proline-rich family protein	[more]
AT1G23040.1	7.3e-12	39.55	hydroxyproline-rich glycoprotein family protein	[more]
AT1G02405.1	5.0e-05	32.09	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..76
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 11..127
None	No IPR available	PANTHER	PTHR35094:SF1	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 11..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028757.1	Spg028757.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity