Spg028736 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028736
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Locationscaffold7: 15914530 .. 15916256 (+)
RNA-Seq ExpressionSpg028736
SyntenySpg028736
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAATGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATTTGATCAAGACCATGATGAAGATAAGAGCTTTTAAATTGTAAGAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAATCTATAAAAACAAAAAAAAAGGTGCATGACAATACAAATTGAAGAAATTCTTTAGTACTGGGGGCAATACAACAAATTGAAGTTGTACACCGTTATAAATATGAAGCTACGAGTTGGACGAATAAAAGAAGATTTCATTCCTCCAAATTCAACGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGTTCCCGCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTGTAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTGACGCACTTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCCTCTCCCCAAGTTCGAAAGTTCTCACGCGCTTGGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGTTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTTGAAGGTTCTCACGTTGCGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTACACGTTCGAAATTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGA

mRNA sequence

ATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAATGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGTTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTACACGTTCGAAATTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGA

Coding sequence (CDS)

ATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAATGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGTTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTACACGTTCGAAATTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGA

Protein sequence

MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKFEGPYTVRYCVVPSPSSKVLRCTLLRCSFSKFEGSQLYDCYVVPPPSAKDLMLCVAALFPLLSSSKFLTRCVAVPSPKVRRFTHFAAVHSLKFEGSHAASLQFLLSKFEDSHALRCSPFSSSSKVHTLRCFFAKFEGSHATLGCTVVLLPSLSLKVPTLRYCAASFSKFEGSYATLLPSPNSKVLRCTATLPVQSLSKFEGSDATLLPSTRSKFLVLRCFAYLSPNSKVLL
Homology
[Close]
BLAST of Spg028736 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-21
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF 102
           K F E N+D+K+HS +PSRMKRK SV INTEGSL  + P+F
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLT-VKPRF 250

[Close]
BLAST of Spg028736 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 5.5e-21
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF 102
           K F E N D+K+HS +PSRMKRK SV INTEGSL  + P+F
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLT-VKPRF 191

[Close]
BLAST of Spg028736 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 9.4e-21
Identity = 61/101 (60.40%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC +ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF 102
           K F E N+D+K+HS +PSRMKRK SV INTEGSL  + P+F
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLT-VKPRF 191

[Close]
BLAST of Spg028736 vs. NCBI nr
Match: KAA0063719.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-20
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC  ST  R S F+RL +STSKK + STS FDRLK+TNDQ +R+M  L+ 
Sbjct: 216 LSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKFLKA 275

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF 102
           K F E N+D+K+HS +PSRMKRK SV INTEGSL  L P+F
Sbjct: 276 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLT-LKPRF 315

[Close]
BLAST of Spg028736 vs. NCBI nr
Match: TYK18884.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-20
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 95
           K F E N+D+K+HS +PSRMKRK S+ INT+GSL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSL 185

[Close]
BLAST of Spg028736 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-21
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF 102
           K F E N+D+K+HS +PSRMKRK SV INTEGSL  + P+F
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLT-VKPRF 250

[Close]
BLAST of Spg028736 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-21
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF 102
           K F E N D+K+HS +PSRMKRK SV INTEGSL  + P+F
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLT-VKPRF 191

[Close]
BLAST of Spg028736 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-21
Identity = 61/101 (60.40%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC +ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF 102
           K F E N+D+K+HS +PSRMKRK SV INTEGSL  + P+F
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLT-VKPRF 191

[Close]
BLAST of Spg028736 vs. ExPASy TrEMBL
Match: A0A5D3D5Q0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00920 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-21
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 95
           K F E N+D+K+HS +PSRMKRK S+ INT+GSL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSL 185

[Close]
BLAST of Spg028736 vs. ExPASy TrEMBL
Match: A0A5A7VDY3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002440 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-21
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 1   MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLEL 60
           +SMA  EEE+QC  ST  R S F+RL +STSKK + STS FDRLK+TNDQ +R+M  L+ 
Sbjct: 216 LSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKFLKA 275

Query: 61  KLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF 102
           K F E N+D+K+HS +PSRMKRK SV INTEGSL  L P+F
Sbjct: 276 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLT-LKPRF 315

The following BLAST results are available for this feature:
BLAST of Spg028736 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044978.14.2e-2161.39retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050734.15.5e-2161.39gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... [more]
KAA0036008.19.4e-2160.40Retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0063719.11.6e-2061.39ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK18884.11.6e-2061.70gag protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of Spg028736 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg028736 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TQ062.0e-2161.39Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3BBF92.7e-2161.39Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7SZJ74.5e-2160.40Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3D5Q07.7e-2161.70Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VDY37.7e-2161.39Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Spg028736 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028736.1Spg028736.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008233 peptidase activity