Spg028710 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028710
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold7: 16259629 .. 16263249 (-)
RNA-Seq Expression	Spg028710
Synteny	Spg028710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAAGATCTCAAAGCTTATTGAAGAATCCTCTAAGGATAAGGTTGCAGTAAAAAACAACCCGCTGTTTGAATCTGTCATTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTACTTGAAGAACCAACTGCAAAATCGAGAAACGGCTGAGTCTAGCCAGACCCCGGCTGCAGGAAAGAATGATAAGGGGAAGGCTGTCGTGCATGAGGACCAACCACAACACTCCGCGTCAGTTGCCTCTTTGTCTGTCCAACAACTACAAGACATGATCACAAATTCCATCAGAGCTCAATATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCTAAACCTTATACAAAGAGGATTGACAATCTTAGACTGCCCATTGGGTATCAGCCTCCCAAGTTCCAACAGTTTGATGGAAAGGGCAACCCAAAGCAGCACATCGCCCACTTTGTTGAAACCTGTGAGAACGCTGGTACTCGAGGAGATTTGCTTGTTAAGCAATTTGTCCGAACACTGAAAGGAAACGCGTTCGATTGGTACACTGACCTGGAGCCTGATACAATGGACAATTGGGAACAGATGGAGAAAGAGTTTCTGAATCGCTTCTACAGTACGAGGCGGACAGTTAGTATGACGGAACTCACGAACACAAAGCAGCGAAAGGGTGAGCCAGTCATTAACTACACCAACCGTTGGAGAGCCTTGAGTCTCGACTGTAAAGATAGACTCTCTGAGGTGTCCTCTGTTGAGATGTGCACCCAAGGCATGCACTGGGGACTTCTTTACATCTTGCAGGGGATAAAACCCCGAACCTTTGAAGAATTAGCGACTCGCGCTCATGATATGGAGTTGAGCATCGCTAGTAGAGGGAATAAAGATCCCGTAGTCCTAGACATGAGGAAATAAAAGAAGGAAGTCAAAGGCACTGAGAAAGTTACGAAGAGTGCCATGAAAGATTCCATGGTCGTCAACACGACCCCGGTGAAACTTTCCACCAAAGGAAGGGAAAACAAAACAAATAAGCGAATGGAGACAGGCGAGAGACGTCGCCTAACTTTAAAAGAAAGACAGGAAAAGGTCTATCCATTTCCAGATTCCGATGTCCTAGATATGTTGGAACAACTACTAGAGAAGCAATTAATCGAACTCCCTGAATGCAAACGACCAGAAGAGTTAGGGAAAGTCAATGATCCTAACTTTTGCAAGTATCACAGAGTTGTTGGTCACCCAGTGGAGAAATGTTTCGTATTGAAGGAGCTAATCCTTAAGTTAGCTCGTGAAAAGAAAATTGAGTTGGACCTTGATGAGGTGACTCAAGCAAATCATGCGACATTAATGGCGAATGTAGGGGATCAAATTCCCCCAAACTCTTCATGTGATTATGAAGAGAGGCTGATTCAATTCGGGACCCTTGATCCCATGGTGGTTCGATGCCAAAAAGAAGCCACAATGAAGGGATCCCAAGGAAAATATGATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGGAAAGTTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAAGAAGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTAGTAGAATACTTCCCAAGGCGCTTTCTCAATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGACGTCCCTGCTAGCTCCTCGGGAACGGTAGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAACGTCCTAATTAACGCATTGATAGAGTCTGATGGTACAAACATCCCAACCTCTGAGGCACGCACATGTGCTTCGTGTTGCATGTCTATCGGATTTTCCGATGAAGATTTGCTGCTAAGGTCAAAGCCTCACAATAGACCTTTATTCGTCTCAGGATACATTCGAGAACAGAGGGTTAGTCGGATCCTCATCAATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTTGATGGAGGAATTATCAAACAGTAAACTGGTGATCCAAGGTTTCAATCAGGGTGGACAACGGGCGATTGACATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTTGCCCTTGGATCCATGGTAATGGAGTCATAACCTCTACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTAACACTAACCCATTTTCAGAAGCTGAATCTCATTTCACTGATGCAAAGTTTTATTTGAAGAATGAAAACACAGGGGAAATCATACCTGCAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGATTTAGAGCCACAAGCAGATGCAACAAAGGAAGTTGTTGAAGATGTGAATACTTCCAACCTGAGAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTATGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAGGCATAAAGGTCGGTGACGTTGAAATTTTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCTGAGGATGATCAGATAAAAGCAATCTTGCCTGACAAACGGACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGAAAGATCTAAGCTCTCTGCAACACAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCAACAACGAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCGATTCGCATAACAAGAAAAGGGAAGGTGAAAGTGGCAGACACAAACCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACGAATGAACTTCTGTTTTTAGGCGCATTAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAATGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTGAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAGCTCCGAATGTCACTCGACCTTCAACTTTTCAATGGTTAAACGTGCCCATGGGGAGAGAAGAGAGTACATTTTCAACTCCTGATGTGACTCGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTCATCGATTTCTCACCGACTT

mRNA sequence

ATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAAGATCTCAAAGCTTATTGAAGAATCCTCTAAGGATAAGGTTGCAGTAAAAAACAACCCGCTGTTTGAATCTGTCATTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGGATCCCAAGGAAAATATGATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGGAAAGTTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAAGAAGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTAGTAGAATACTTCCCAAGGCGCTTTCTCAATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGACGTCCCTGCTAGCTCCTCGGGAACGGTAGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTGCGCATTAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAATGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTGAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAGCTCCGAATGTCACTCGACCTTCAACTTTTCAATGGTTAAACGTGCCCATGGGGAGAGAAGAGAGTACATTTTCAACTCCTGATGTGACTCGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTCATCGATTTCTCACCGACTT

Coding sequence (CDS)

ATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAAGATCTCAAAGCTTATTGAAGAATCCTCTAAGGATAAGGTTGCAGTAAAAAACAACCCGCTGTTTGAATCTGTCATTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGGATCCCAAGGAAAATATGATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGGAAAGTTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAAGAAGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTAGTAGAATACTTCCCAAGGCGCTTTCTCAATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGACGTCCCTGCTAGCTCCTCGGGAACGGTAGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTGCGCATTAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAATGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTGAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAGCTCCGAATGTCACTCGACCTTCAACTTTTCAATGGTTAAACGTGCCCATGGGGAGAGAAGAGAGTACATTTTCAACTCCTGATGTGACTCGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTCATCGATTTCTCACCGACTT

Protein sequence

IEIKEDHTPLAVASKISKLIEESSKDKVAVKNNPLFESVIPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGKKKSKKSKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPSEEEESTFSAPNVTRPSTFQWLNVPMGREESTFSTPDVTRPSVFQRLSVTTRRDKKEQSASSISHRL

Homology

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BLAST of Spg028710 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-18
Identity = 75/200 (37.50%), Postives = 106/200 (53.00%), Query Frame = 0


Query: 78  LMKAGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGKKKSK 137
           +M + SQ K + IEDE E W +V  +K+++ S  +  S   +   +   S KKKG++  K
Sbjct: 343 VMTSNSQNKEEPIEDEGEEWIVVAHKKERQTSSVQTNSHFHQKHSKGNISHKKKGRRNKK 402

Query: 138 --KSKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASS 197
             KSKP+  + EDF  P Q ITL E+FPR FL D   E LE   CH   +VE D+   S 
Sbjct: 403 MWKSKPIKGKDEDFLQPRQSITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSY 462

Query: 198 SGTVAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLS 257
                        S+ D  RI+P   R+ VFQRLS+   EEE+  PT++ TR S F+ LS
Sbjct: 463 EEVDNSNEIKQRTSVFD--RIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLS 522

Query: 258 MPSEEEESTFSAPNVTRPST 276
           + + +++         RPST
Sbjct: 523 ISTSKKD---------RPST 531

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BLAST of Spg028710 vs. NCBI nr
Match: KAA0050143.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06400.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-18
Identity = 75/207 (36.23%), Postives = 112/207 (54.11%), Query Frame = 0


Query: 79  MKAGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGK--KKS 138
           M + S+ K + IEDE+E W ++ R+K ++ +  + +    +   +   S K KGK  KK 
Sbjct: 1   MTSNSRNKEEPIEDEHEEWIVMARQKGRQTNSIQTKLHFHQKHSKGSISHKNKGKRNKKM 60

Query: 139 KKSKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASSS 198
            K +P+  + EDF  P   ITL E+FPR FL D   E LE  TCH V +VE D+   SS 
Sbjct: 61  SKPRPIKGKDEDFLRPRWLITLTEFFPRSFLEDHPKEILEVTTCHTVSIVEVDNNYVSSK 120

Query: 199 GTVAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSM 258
                       S+ D  RI+P   R+ VFQRLS+   EEE+  PT++STR S F+RLS+
Sbjct: 121 EVDNSNEIKQKTSVFD--RIKPSTTRSSVFQRLSMATKEEENQCPTSTSTRTSAFKRLSI 180

Query: 259 PSEEEESTFSAPNVTRPSTFQWLNVPM 284
            + +++         +PST+ +  + M
Sbjct: 181 STSKKD---------QPSTYVFYRLKM 196

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BLAST of Spg028710 vs. NCBI nr
Match: TYK27425.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-18
Identity = 83/239 (34.73%), Postives = 119/239 (49.79%), Query Frame = 0


Query: 81  AGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGK--KKSKK 140
           + SQ K + IEDE + W +V  +K+++ S  + +S   +   +     KKKG+  KK +K
Sbjct: 250 SNSQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKKKGRRNKKMRK 309

Query: 141 SKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASSSGT 200
            K +  + EDF  P Q ITL E+ PRRFL D   E LE   CH V +VE D+   SS   
Sbjct: 310 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEV 369

Query: 201 VAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPS 260
                     SI D  RI+P   R+ VFQRLS+   EEE+  PT+ STR S F+RLS+ +
Sbjct: 370 DYSNEIKKRTSIFD--RIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSIST 429

Query: 261 EEEESTFSAPNVTRPSTFQWLNVPMGREESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 318
            +++         RPST                       SVF RL +T  + ++E+ +
Sbjct: 430 SKKD---------RPST-----------------------SVFNRLKMTNDQQQREKKS 454

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BLAST of Spg028710 vs. NCBI nr
Match: KAA0062458.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-18
Identity = 83/239 (34.73%), Postives = 119/239 (49.79%), Query Frame = 0


Query: 81  AGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGK--KKSKK 140
           + SQ K + IEDE + W +V  +K+++ S  + +S   +   +     KKKG+  KK +K
Sbjct: 343 SNSQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKKKGRRNKKMRK 402

Query: 141 SKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASSSGT 200
            K +  + EDF  P Q ITL E+ PRRFL D   E LE   CH V +VE D+   SS   
Sbjct: 403 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEV 462

Query: 201 VAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPS 260
                     SI D  RI+P   R+ VFQRLS+   EEE+  PT+ STR S F+RLS+ +
Sbjct: 463 DYSNEIKKRTSIFD--RIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSIST 522

Query: 261 EEEESTFSAPNVTRPSTFQWLNVPMGREESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 318
            +++         RPST                       SVF RL +T  + ++E+ +
Sbjct: 523 SKKD---------RPST-----------------------SVFNRLKMTNDQQQREKKS 547

[Close]

BLAST of Spg028710 vs. NCBI nr
Match: KAA0062063.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-17
Identity = 78/222 (35.14%), Postives = 120/222 (54.05%), Query Frame = 0


Query: 63  DQDERMAEME-------RKLNLLMKAGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKES 122
           DQ E + + E       R    +M   SQ K + I+D+ + W +V R+K+++ ++ + +S
Sbjct: 330 DQRESLIQFETFKPILVRFQQKIMMTNSQYKEEPIKDDGKEWIVVARQKEKQTNFIQTKS 389

Query: 123 RLFRDSKRKVKSQKKKGK--KKSKKSKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGE 182
              +   +   S K KGK  KK  KSKP+  + +DF  P + ITL E+FPR FL D+  E
Sbjct: 390 HFHQKHSKGSISHKNKGKRNKKMSKSKPIKGKDDDFLQPRRSITLTEFFPRSFLKDNPKE 449

Query: 183 ALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNE 242
            LE   CH+V VVE D+   SS   V    ++   +     RI+P   R+ VFQRLS+  
Sbjct: 450 ILEITACHVVSVVEVDNNYVSSE-EVDNSNEIKQRTFV-FDRIKPSTTRSSVFQRLSMVM 509

Query: 243 MEEESTQPTNSSTRPSVFRRLSMPSEEEESTFSAPNVTRPST 276
            EEE+  P ++ST+ S F+RLS+ + +++         RPST
Sbjct: 510 KEEENQCPMSTSTQTSTFKRLSISTSKKD---------RPST 540

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BLAST of Spg028710 vs. ExPASy TrEMBL
Match: A0A5A7U2K7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00980 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-18
Identity = 75/207 (36.23%), Postives = 112/207 (54.11%), Query Frame = 0


Query: 79  MKAGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGK--KKS 138
           M + S+ K + IEDE+E W ++ R+K ++ +  + +    +   +   S K KGK  KK 
Sbjct: 1   MTSNSRNKEEPIEDEHEEWIVMARQKGRQTNSIQTKLHFHQKHSKGSISHKNKGKRNKKM 60

Query: 139 KKSKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASSS 198
            K +P+  + EDF  P   ITL E+FPR FL D   E LE  TCH V +VE D+   SS 
Sbjct: 61  SKPRPIKGKDEDFLRPRWLITLTEFFPRSFLEDHPKEILEVTTCHTVSIVEVDNNYVSSK 120

Query: 199 GTVAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSM 258
                       S+ D  RI+P   R+ VFQRLS+   EEE+  PT++STR S F+RLS+
Sbjct: 121 EVDNSNEIKQKTSVFD--RIKPSTTRSSVFQRLSMATKEEENQCPTSTSTRTSAFKRLSI 180

Query: 259 PSEEEESTFSAPNVTRPSTFQWLNVPM 284
            + +++         +PST+ +  + M
Sbjct: 181 STSKKD---------QPSTYVFYRLKM 196

[Close]

BLAST of Spg028710 vs. ExPASy TrEMBL
Match: A0A5D3DVW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001190 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-18
Identity = 83/239 (34.73%), Postives = 119/239 (49.79%), Query Frame = 0


Query: 81  AGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGK--KKSKK 140
           + SQ K + IEDE + W +V  +K+++ S  + +S   +   +     KKKG+  KK +K
Sbjct: 250 SNSQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKKKGRRNKKMRK 309

Query: 141 SKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASSSGT 200
            K +  + EDF  P Q ITL E+ PRRFL D   E LE   CH V +VE D+   SS   
Sbjct: 310 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEV 369

Query: 201 VAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPS 260
                     SI D  RI+P   R+ VFQRLS+   EEE+  PT+ STR S F+RLS+ +
Sbjct: 370 DYSNEIKKRTSIFD--RIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSIST 429

Query: 261 EEEESTFSAPNVTRPSTFQWLNVPMGREESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 318
            +++         RPST                       SVF RL +T  + ++E+ +
Sbjct: 430 SKKD---------RPST-----------------------SVFNRLKMTNDQQQREKKS 454

[Close]

BLAST of Spg028710 vs. ExPASy TrEMBL
Match: A0A5A7V4E9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00430 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-18
Identity = 83/239 (34.73%), Postives = 119/239 (49.79%), Query Frame = 0


Query: 81  AGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGK--KKSKK 140
           + SQ K + IEDE + W +V  +K+++ S  + +S   +   +     KKKG+  KK +K
Sbjct: 343 SNSQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIFYKKKGRRNKKMRK 402

Query: 141 SKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASSSGT 200
            K +  + EDF  P Q ITL E+ PRRFL D   E LE   CH V +VE D+   SS   
Sbjct: 403 PKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTVSIVEVDNNQVSSKEV 462

Query: 201 VAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPS 260
                     SI D  RI+P   R+ VFQRLS+   EEE+  PT+ STR S F+RLS+ +
Sbjct: 463 DYSNEIKKRTSIFD--RIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSIST 522

Query: 261 EEEESTFSAPNVTRPSTFQWLNVPMGREESTFSTPDVTRPSVFQRLSVTTRRDKKEQSA 318
            +++         RPST                       SVF RL +T  + ++E+ +
Sbjct: 523 SKKD---------RPST-----------------------SVFNRLKMTNDQQQREKKS 547

[Close]

BLAST of Spg028710 vs. ExPASy TrEMBL
Match: A0A5A7V1P3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004060 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-18
Identity = 78/222 (35.14%), Postives = 120/222 (54.05%), Query Frame = 0


Query: 63  DQDERMAEME-------RKLNLLMKAGSQGKYDSIEDENEGWTLVVRRKKQKQSYARKES 122
           DQ E + + E       R    +M   SQ K + I+D+ + W +V R+K+++ ++ + +S
Sbjct: 330 DQRESLIQFETFKPILVRFQQKIMMTNSQYKEEPIKDDGKEWIVVARQKEKQTNFIQTKS 389

Query: 123 RLFRDSKRKVKSQKKKGK--KKSKKSKPVVEESEDFFCPPQPITLVEYFPRRFLNDSQGE 182
              +   +   S K KGK  KK  KSKP+  + +DF  P + ITL E+FPR FL D+  E
Sbjct: 390 HFHQKHSKGSISHKNKGKRNKKMSKSKPIKGKDDDFLQPRRSITLTEFFPRSFLKDNPKE 449

Query: 183 ALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLRIRPPVARALVFQRLSVNE 242
            LE   CH+V VVE D+   SS   V    ++   +     RI+P   R+ VFQRLS+  
Sbjct: 450 ILEITACHVVSVVEVDNNYVSSE-EVDNSNEIKQRTFV-FDRIKPSTTRSSVFQRLSMVM 509

Query: 243 MEEESTQPTNSSTRPSVFRRLSMPSEEEESTFSAPNVTRPST 276
            EEE+  P ++ST+ S F+RLS+ + +++         RPST
Sbjct: 510 KEEENQCPMSTSTQTSTFKRLSISTSKKD---------RPST 540

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BLAST of Spg028710 vs. ExPASy TrEMBL
Match: A0A5A7TY01 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00180 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-17
Identity = 62/160 (38.75%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 83  SQGKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQKKKGKKKSKKSKPV 142
           S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+QK K KKK++K K V
Sbjct: 155 SHVKERSIEEDNEGWIVVTRRMKRKSTLTQKESSFYRNYRRRNKAQKNKKKKKTRKPKLV 214

Query: 143 VEESEDFFCPPQPITLVEYFPRRFLNDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGP 202
            EE +DF  P + +T+ + FP RFL D Q E  E +TCH ++  E++ +P+ S       
Sbjct: 215 HEEDKDFPQPQRLVTMADLFPTRFLCDHQDENPEVITCHTINATEEESIPSRSLEEEGMS 274

Query: 203 GDLSSFSIKDLLRIRPPVARALVFQRLSVNEMEEESTQPT 243
            +LS F++ DLL + P   + ++   L +N     S+ PT
Sbjct: 275 KNLSRFNMDDLLSL-PQETKTILINAL-LNSGASSSSTPT 312

The following BLAST results are available for this feature:

BLAST of Spg028710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040811.1	1.5e-18	37.50	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050143.1	2.5e-18	36.23	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06400.1 retrotranspos...	[more]
TYK27425.1	5.6e-18	34.73	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0062458.1	5.6e-18	34.73	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0062063.1	1.2e-17	35.14	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg028710 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2K7	1.2e-18	36.23	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DVW2	2.7e-18	34.73	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V4E9	2.7e-18	34.73	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7V1P3	6.0e-18	35.14	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TY01	1.3e-17	38.75	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg028710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..324
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..324
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028710.1	Spg028710.1	mRNA