Spg028688 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028688
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon protein, putative, CACTA, En/Spm sub-class
Location	scaffold7: 15457532 .. 15460523 (-)
RNA-Seq Expression	Spg028688
Synteny	Spg028688

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATGTTGGGTCAAAGTCGAGACCACGATGCATCTTTTGTGTATGAAGAGGATGCGAACCCCGCAGTGGTTGCTTCCTCGACTGAGCCGGAGACTGCTCGAGCTTCAAGTAATAATCATATCATACGAACTTATATTTTTAAAGGTTATTTCGTTATCTAACAACTTCTTCCTTGTTTTAGGATCTAACGCATTGCGAGGAAGACGACCGAGAGGGCATAGTCGAAACATCAAAATTTATCGGTATGTGGCTACACACGATAGGATACCCATTCATATTGATGAGTCAGTCGACAAACTAGTGTGTAGTTTTGCTACACAATTCAGTGGGACGATTGGTACCTAATGTGGAATTTCCTTACCGCAAGTGTACGGGTCAAGTTTTAATATAGTGTTTTCATGATTAAATGAGTGTCGTCCTCTCGATTGGGTTTCTAGCCAAATTAATTATCGCGAATACTTTTGTTCAATTTTATCTAGAGATCTAAATTAAGTGAGAAAGAACGATCAAGACACAAAAGCTAAAAAGTGTGGAATTCAAATGGAGAAAACTCTTAGGGAATTGATTTCACCTATTGGGGTTGTGAATTAATTACATGGATGAATGAACATGCAAAGGCTCATAAATCAAGGATTAACAATAATCATATTTATCTCTTCCGAGCATAAATAATTCCCAAGCATGCTATGAACTCAATATCCCTATCTAAATTCATTAACATTCAAGACCTAAATTCGAATCCTTTTAACAATTTCTAAGACTATCCTAAATCTCCCGATCTTAGGATTATCCTAGTTATGCAATTCAAGATCTAAACTAAACCCCCTCTCCCGAGCAAGATTTAGAGAACACATCCAATAATTCATGGTCGGTAAACTAAAGGCATTGAGCATAAAAATTGCATAAATGAGTTTCAAGTAGTCAAACATCCATAAATTAAATCACAACGTCCAAAGGGCTACATCAATCCCTAAGAAAACAAGTCTAGCTACTCATACATGGCGTTACAATGTAAGCTAAACATGAAAAAGCCATAAAAACAACTAAAGTAAGGGAAGAAAAGAGATAAAACGCTAGAATCATCGAAACCGCACATCCTCGCGCGATCTCTAGGAGCTAAGCCTTGAATCCCGCTCCTCCACTTTGCTTCAGCTGCCACAGAAGGTCTCTAATAGATTTTAGGGCTAAAATTGCACCAAATGAACTCCCCCAATCCGTAGCCAATCGCTTTCCTTTTATAATGAATCTGCCTACAGCATCGAGACGCTAGGGACAGCATCTCGACGTTGTCCTCTTTACCGCCAGAATTTGTTTAGGAAACTTTGTAGCGTCGAGATGCCAAGAAGGCAGCGTCTCGACGCTACCTCTCGGGTTTGCAGCCTTTGTAAGCTTCTAATTTGAGTCTTGTTTTGCTTCTTCTGCTTTTCTTTAGGTCCCGATCACCCAATCAAATCCAATTTCTTTAATTTATCTCCAAAACTCAATTTCCTACAAAATAGACATTAAGGTGCATAATTTGGTCAAATAGTACTCAAAGACTAACTAAAATTAACCGGGAAAAATAGCTCACTATGCATGCTATCAGTACCATCACACGAGATACAATTTCTTTGCATTACAAGACTTGGAATGAGGTCCCCCAACAAGTCTGAGATGGCGTAAAAGATCGACTCTTGGTAAGTTTACGTTTTTTGTTTATACTATTTGAATCATATATACTTGTTCTTTCTTGATTTGTCCAACCCGCATATTAACAAGTACGTGGAACGACAAATAATGAACACGTTTAAGGAGTATAGGGTCGAGCTGCATAGGCACTACAAGGAATATGAGGACCCTAAAGTTGCTCGTGAAAATCCACCAAAAAGGATTACAGACCCAAACAATTGGAATATGTTATGCGACAGATGGGAGACTCCTGAATGGAAGGTACATTTTCTTGTTTTACTTCTAGCTATGTGTAGGATGTTTACAAAAAAAAAATACTAATCATTGCTTTTTTTTAGAAAAAACGGAGCAAAATAAGAGGAGTCGCTCACATCTCCCCTACAACCATCAAACTGGATGTAAGTCTTTCGTTCAGAAGCAAAATGAACTGGTAAGGCAAATACTTTTTTCTTTTTGTTTTGTCTTTTTATTCCTTATCTCTTTATTATGACTATTGGTGTGTGTTTTGGACTTAAAGAAAATACTACATGGTCGTGATATTGGGTCAGTGGATTTATTTGTTCCACAATAGTCATTTCACTGAGAAGAATGGATGGATCAACGACATTGCGAGAGATGTATACGTAAGTTATCTTTCTTAGTAATGAGTGTTTGTTCTTTGTATTTTTCGTTTGACACTATTATATTATGACTATAGTTGGAAATGGATGAGCTACTGAAAGCATCATCAGAAGAAGGGTGGTCTCGCAGCCTGAGGTTTTGAAACAGGTTTTGGGTACCCGATCAAGCCATATCAAAGGTCTTGGTTGGGATCCAAAACCTAGCTCGTCTGTCAGTGTCTCATCTTCAACCCCTCGTGAAAAAGAGCTAGAGAAGAAAGTAGAGATGATGCAATCTTAGATGGATGTGCTCAAGGAAACAAACGAGACACTTACAACATCCATCAAGAACCAAACCGAGATGTTGGAACAAACGAAGGAGATGTGGGAACAAAGGTGGGCTCAATTCCAACAATTCCTGGGCGAACGACAGGGAGGAGGGTCTTCGAACTCTTAGGTATATACCAAGTTTATGTGATTTATGTACTATACTTAATTTAGGTTCAAGTACATGACTATAATTGATTTGTGTGTATGTGACTATTCTGCAGTTCTAACCCTTCAGCGCAACATTGCGTCGGCATATACACCTGGAGCAATGATCTACTCCGACGCAAAGTTGCGTCCGCATATTATCTACGCCGATGCAACATTGCGTCAGCATAGCTCCATCATCCACCACATCTGGGTTTCGTTAACGCCAACACAACTTGCGTCGGTGTAA

mRNA sequence

ACCATGTTGGGTCAAAGTCGAGACCACGATGCATCTTTTGTGTATGAAGAGGATGCGAACCCCGCAGTGGTTGCTTCCTCGACTGAGCCGGAGACTGCTCGAGCTTCAAGATCTAACGCATTGCGAGGAAGACGACCGAGAGGGCATAGTCGAAACATCAAAATTTATCGCATCGAGACGCTAGGGACAGCATCTCGACGTTGTCCTCTTTACCGCCAGAATTTGTTTAGGAAACTTTGTAGCGTCGAGATGCCAAGAAGGCAGCGTCTCGACGCTACCTCTCGGTATAGGGTCGAGCTGCATAGGCACTACAAGGAATATGAGGACCCTAAAGTTGCTCGTGAAAATCCACCAAAAAGGATTACAGACCCAAACAATTGGAATATGTTATGCGACAGATGGGAGACTCCTGAATGGAAGTTGGAAATGGATGAGCTACTGAAAGCATCATCAGAAGAAGGGTGGTCTCGCAGCCTGAGAGCTAGAGAAGAAAGTAGAGATGATGCAATCTTAGATGGATGTGCTCAAGGAAACAAACGAGACACTTACAACATCCATCAAGAACCAAACCGAGATGTTGGAACAAACGAAGGAGATGTGGGAACAAAGGTGGGCTCAATTCCAACAATTCCTGGGCGAACGACAGGGAGGAGGGTCTTCGAACTCTTAGTTCTAACCCTTCAGCGCAACATTGCGTCGGCATATACACCTGGAGCAATGATCTACTCCGACGCAAAGTTGCGTCCGCATATTATCTACGCCGATGCAACATTGCGTCAGCATAGCTCCATCATCCACCACATCTGGGTTTCGTTAACGCCAACACAACTTGCGTCGGTGTAA

Coding sequence (CDS)

ACCATGTTGGGTCAAAGTCGAGACCACGATGCATCTTTTGTGTATGAAGAGGATGCGAACCCCGCAGTGGTTGCTTCCTCGACTGAGCCGGAGACTGCTCGAGCTTCAAGATCTAACGCATTGCGAGGAAGACGACCGAGAGGGCATAGTCGAAACATCAAAATTTATCGCATCGAGACGCTAGGGACAGCATCTCGACGTTGTCCTCTTTACCGCCAGAATTTGTTTAGGAAACTTTGTAGCGTCGAGATGCCAAGAAGGCAGCGTCTCGACGCTACCTCTCGGTATAGGGTCGAGCTGCATAGGCACTACAAGGAATATGAGGACCCTAAAGTTGCTCGTGAAAATCCACCAAAAAGGATTACAGACCCAAACAATTGGAATATGTTATGCGACAGATGGGAGACTCCTGAATGGAAGTTGGAAATGGATGAGCTACTGAAAGCATCATCAGAAGAAGGGTGGTCTCGCAGCCTGAGAGCTAGAGAAGAAAGTAGAGATGATGCAATCTTAGATGGATGTGCTCAAGGAAACAAACGAGACACTTACAACATCCATCAAGAACCAAACCGAGATGTTGGAACAAACGAAGGAGATGTGGGAACAAAGGTGGGCTCAATTCCAACAATTCCTGGGCGAACGACAGGGAGGAGGGTCTTCGAACTCTTAGTTCTAACCCTTCAGCGCAACATTGCGTCGGCATATACACCTGGAGCAATGATCTACTCCGACGCAAAGTTGCGTCCGCATATTATCTACGCCGATGCAACATTGCGTCAGCATAGCTCCATCATCCACCACATCTGGGTTTCGTTAACGCCAACACAACTTGCGTCGGTGTAA

Protein sequence

TMLGQSRDHDASFVYEEDANPAVVASSTEPETARASRSNALRGRRPRGHSRNIKIYRIETLGTASRRCPLYRQNLFRKLCSVEMPRRQRLDATSRYRVELHRHYKEYEDPKVARENPPKRITDPNNWNMLCDRWETPEWKLEMDELLKASSEEGWSRSLRAREESRDDAILDGCAQGNKRDTYNIHQEPNRDVGTNEGDVGTKVGSIPTIPGRTTGRRVFELLVLTLQRNIASAYTPGAMIYSDAKLRPHIIYADATLRQHSSIIHHIWVSLTPTQLASV

Homology

[Close]

BLAST of Spg028688 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-10
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 88  QRLDAT-SRYRVELHRHYKEYEDPKVARENPPKRITDPNNWNMLCDRWETPEWKLEMDEL 147
           QR+  T   YR +L++HY+ ++DPK AR  PPKRITD  +WN+LC+RWETPEWK + +  
Sbjct: 500 QRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDATDWNLLCNRWETPEWKKKTETN 559

Query: 148 LKASSE 153
            K+ S+
Sbjct: 560 KKSRSK 565

[Close]

BLAST of Spg028688 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-10
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 88  QRLDAT-SRYRVELHRHYKEYEDPKVARENPPKRITDPNNWNMLCDRWETPEWKLEMDEL 147
           QR+  T   YR +L++HY+ ++DPK AR  PPKRITD  +WN+LC+RWETPEWK + +  
Sbjct: 688 QRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDATDWNLLCNRWETPEWKKKTETN 747

Query: 148 LKASSE 153
            K+ S+
Sbjct: 748 KKSRSK 753

[Close]

BLAST of Spg028688 vs. NCBI nr
Match: XP_038887411.1 (poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412.1 poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-10
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 88  QRLDAT-SRYRVELHRHYKEYEDPKVARENPPKRITDPNNWNMLCDRWETPEWKLEMDEL 147
           QR+  T   YR +L++HY+ ++DPK AR  PPKRITD  +WN+LC+RWETPEWK + +  
Sbjct: 688 QRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDATDWNLLCNRWETPEWKKKTETN 747

Query: 148 LKASSE 153
            K+ S+
Sbjct: 748 KKSRSK 753

[Close]

BLAST of Spg028688 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-10
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 88  QRLDAT-SRYRVELHRHYKEYEDPKVARENPPKRITDPNNWNMLCDRWETPEWKLEMDEL 147
           QR+  T   YR +L++HY+ ++DPK AR  PPKRITD  +WN+LC+RWETPEWK + +  
Sbjct: 661 QRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDATDWNLLCNRWETPEWKKKTETN 720

Query: 148 LKASSE 153
            K+ S+
Sbjct: 721 KKSRSK 726

[Close]

BLAST of Spg028688 vs. NCBI nr
Match: XP_038887410.1 (poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-10
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 88  QRLDAT-SRYRVELHRHYKEYEDPKVARENPPKRITDPNNWNMLCDRWETPEWKLEMDEL 147
           QR+  T   YR +L++HY+ ++DPK AR  PPKRITD  +WN+LC+RWETPEWK + +  
Sbjct: 688 QRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDATDWNLLCNRWETPEWKKKTETN 747

Query: 148 LKASSE 153
            K+ S+
Sbjct: 748 KKSRSK 753

[Close]

BLAST of Spg028688 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.2e-10
Identity = 32/70 (45.71%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 71  YRQNLFRKLCSVEMPRRQRLDATSRYRVELHRHYKEYEDPKVARENPPKRITDPNNWNML 130
           +R +L +++ +  + ++ ++ +  +YR +LH++Y E+EDP  AR NPP+R+T+P +WN L
Sbjct: 21  FRVDLSKRVVNKFIEQQMQI-SFKQYRSDLHQYYCEFEDPVEARANPPERLTNPEDWNHL 80

Query: 131 CDRWETPEWK 141
           CDRWETPEWK
Sbjct: 81  CDRWETPEWK 89

[Close]

BLAST of Spg028688 vs. ExPASy TrEMBL
Match: A0A6J1DTP1 (uncharacterized protein LOC111023906 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023906 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-07
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 96  YRVELHRHYKEYEDPKVARENPPKRITDPNNWNMLCDRWETPEWK 141
           +R ELH HYKE   P VARE P  RIT   +W+ LCDRWETP+WK
Sbjct: 79  FRAELHAHYKENGPPNVAREKPHARITKLQDWHKLCDRWETPDWK 123

[Close]

BLAST of Spg028688 vs. ExPASy TrEMBL
Match: A0A5D3BA62 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00340 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 61  LGTASRR-CPLYRQNLFRKLCSVE---MPRRQRLDATSRYRVELHRHYKEYEDPKVAREN 120
           +GTA R   PL  +NL      V    + R +  +    +R +LH++Y E++DP  AR N
Sbjct: 420 IGTAVRNTIPLGCENLKVVPMGVRELVIDRLEMQNTFREFRADLHKYYCEFDDPVEARAN 479

Query: 121 PPKRITDPNNWNMLCDRWETPEWKLEMDELLKASS 152
           PP RIT   +WNM+CDRWET  WK + ++  ++ S
Sbjct: 480 PPNRIT-LEDWNMMCDRWETDAWKKKREKNKRSRS 513

[Close]

BLAST of Spg028688 vs. ExPASy TrEMBL
Match: A0A5A7VAV0 (Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00300 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 61  LGTASRR-CPLYRQNLFRKLCSVE---MPRRQRLDATSRYRVELHRHYKEYEDPKVAREN 120
           +GTA R   PL  +NL      V    + R +  +    +R +LH++Y E++DP  AR N
Sbjct: 564 IGTAVRNTIPLGCENLKVVPMGVRELVIDRLEMQNTFREFRADLHKYYCEFDDPVEARAN 623

Query: 121 PPKRITDPNNWNMLCDRWETPEWKLEMDELLKASS 152
           PP RIT   +WNM+CDRWET  WK + ++  ++ S
Sbjct: 624 PPNRIT-LEDWNMMCDRWETDAWKKKREKNKRSRS 657

[Close]

BLAST of Spg028688 vs. ExPASy TrEMBL
Match: A0A5A7SJT9 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002610 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 96  YRVELHRHYKEYEDPKVARENPPKRITDPNNWNMLCDRWETPEWK-----LEMDEL---- 155
           +R  LH++Y +++D   AR NPPKRIT   NWNM+CDRWET  WK      ++DE+    
Sbjct: 8   FRASLHKYYCKFDDFIEARANPPKRITH-ENWNMMCDRWETDAWKKKKKGYDVDEVEVFH 67

The following BLAST results are available for this feature:

BLAST of Spg028688 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887413.1	6.3e-10	51.52	uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida]	[more]
XP_038887408.1	6.3e-10	51.52	poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida]	[more]
XP_038887411.1	6.3e-10	51.52	poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412...	[more]
XP_038887409.1	6.3e-10	51.52	poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida]	[more]
XP_038887410.1	6.3e-10	51.52	poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida]	[more]

BLAST of Spg028688 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028688 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUH3	5.2e-10	45.71	uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DTP1	4.1e-07	62.22	uncharacterized protein LOC111023906 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A5D3BA62	3.5e-06	38.95	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VAV0	3.5e-06	38.95	Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuw...	[more]
A0A5A7SJT9	2.3e-05	44.29	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of Spg028688 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028688.1	Spg028688.1	mRNA