Spg028655 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028655
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Serine/threonine-protein kinase RIO1
Location	scaffold7: 14085502 .. 14086410 (-)
RNA-Seq Expression	Spg028655
Synteny	Spg028655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGATTATTGAGTCGGCGAACTGGCCACTCTCCCCCATACAAATCTAAGGACAATCCCTCCTGAAAAGGGGTTCATAACAGACTCAGGATTCAGATTGTGTTACCCAGGTCATCCTATTGAAATAGAAACCTAAACTAGTCAACGACGTTACATCTAGTGGTTACTATTTCGTGGTTCGGTCTTCTGCAAACTCATTGCATAGGATACCCCCACTAGCATGTCTCCTACATGGATGTTTTGGATCAATGCATCTGTATTGAATACAAAATGGGTCGTATCACATAGTGTCACCAGGATAAGGTACCCGACCTTATCCCTATACTATAGACCATTTAGGTTGTTACTTGAACACTGATCCCCGTATGTCCCCACATACTAGTCAAAGTTTCATTTAAACAACCTTGGATCTTCGTTTATTGGATTTTAGGGTTAATTAATGCAAAACTCGATTATTCAATAACAAATTACTAAATCTCTCAAATAACACTTTATTGAGTTTAATTAATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAACTGCAATATAATTTTTAACCGATTCTGCCTCTCTTCCAGTCATATATTCCAAAGACACTGGATAGTGTCAAACATGCTGAGGAGGATGTAATACGTTTAACAAGTGGTCAGGACACTAAAGATATGTACTACAAGACCATTACAGGGTTAAACAAAGCCCTTCCCAGAGTTGAACCTGTGTCACAGCTAAAAGATGAGGAAGAACACAATGCAGACCCAATGGAACAATCCAAAAATTTAACCGGTTTGCCAAATTCTTATGAGAAAGTGACTGAATCAACATCAGAGGAAGATGAAGAGAGCTCGAATGAGTCAAAAGGCGGACCAGGTTCTTCAACCGAGACGACGTAG

mRNA sequence

ATGTCATATATTCCAAAGACACTGGATAGTGTCAAACATGCTGAGGAGGATGTAATACGTTTAACAAGTGGTCAGGACACTAAAGATATGTACTACAAGACCATTACAGGGTTAAACAAAGCCCTTCCCAGAGTTGAACCTGTGTCACAGCTAAAAGATGAGGAAGAACACAATGCAGACCCAATGGAACAATCCAAAAATTTAACCGGTTTGCCAAATTCTTATGAGAAAGTGACTGAATCAACATCAGAGGAAGATGAAGAGAGCTCGAATGAGTCAAAAGGCGGACCAGGTTCTTCAACCGAGACGACGTAG

Coding sequence (CDS)

ATGTCATATATTCCAAAGACACTGGATAGTGTCAAACATGCTGAGGAGGATGTAATACGTTTAACAAGTGGTCAGGACACTAAAGATATGTACTACAAGACCATTACAGGGTTAAACAAAGCCCTTCCCAGAGTTGAACCTGTGTCACAGCTAAAAGATGAGGAAGAACACAATGCAGACCCAATGGAACAATCCAAAAATTTAACCGGTTTGCCAAATTCTTATGAGAAAGTGACTGAATCAACATCAGAGGAAGATGAAGAGAGCTCGAATGAGTCAAAAGGCGGACCAGGTTCTTCAACCGAGACGACGTAG

Protein sequence

MSYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADPMEQSKNLTGLPNSYEKVTESTSEEDEESSNESKGGPGSSTETT

Homology

[Close]

BLAST of Spg028655 vs. NCBI nr
Match: KAE8652566.1 (hypothetical protein Csa_014123 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 8.0e-35
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQDT+DMYYKTITGL +ALP  +P S LKDEEEHNAD 
Sbjct: 410 SYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPMAQPTSDLKDEEEHNADM 469

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKGGPGSSTETT 105
           ++ S+++TGL NS EK TESTSEEDEESSNES+G PGSSTETT
Sbjct: 470 IKPSESITGLSNSCEKATESTSEEDEESSNESEGEPGSSTETT 512

[Close]

BLAST of Spg028655 vs. NCBI nr
Match: XP_004137539.1 (serine/threonine-protein kinase RIO1 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 8.0e-35
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQDT+DMYYKTITGL +ALP  +P S LKDEEEHNAD 
Sbjct: 415 SYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPMAQPTSDLKDEEEHNADM 474

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKGGPGSSTETT 105
           ++ S+++TGL NS EK TESTSEEDEESSNES+G PGSSTETT
Sbjct: 475 IKPSESITGLSNSCEKATESTSEEDEESSNESEGEPGSSTETT 517

[Close]

BLAST of Spg028655 vs. NCBI nr
Match: XP_038895087.1 (serine/threonine-protein kinase RIO1-like [Benincasa hispida] >XP_038895088.1 serine/threonine-protein kinase RIO1-like [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 8.0e-35
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSG+DT+DMYYKTITGL +ALPRV+P  ++KDEEEH+ADP
Sbjct: 410 SYIPKTLDSVKHAEEDVIRLTSGRDTEDMYYKTITGLKQALPRVQPAPEIKDEEEHHADP 469

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKGGPGSSTETT 105
           +E SKN+T L NS EK TESTSEEDEESSNES+G  GSSTETT
Sbjct: 470 IEPSKNITSLSNSCEKETESTSEEDEESSNESEGELGSSTETT 512

[Close]

BLAST of Spg028655 vs. NCBI nr
Match: XP_008437198.1 (PREDICTED: serine/threonine-protein kinase RIO1-like [Cucumis melo] >TYJ99080.1 serine/threonine-protein kinase RIO1-like [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 3.1e-31
Identity = 80/103 (77.67%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQDT+DMYYKTITGL +ALP  +P S  KDEEEHN D 
Sbjct: 415 SYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPIAQPTSDQKDEEEHNTDM 474

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKGGPGSSTETT 105
           +  S+N T L NS EK TESTSEEDEESSNES+G  GSSTETT
Sbjct: 475 IGPSENTTSLSNSCEKETESTSEEDEESSNESEGELGSSTETT 517

[Close]

BLAST of Spg028655 vs. NCBI nr
Match: XP_023542500.1 (serine/threonine-protein kinase RIO1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 7.7e-30
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQ+T+DMYYKTITGL +ALPRV+P S+L    EH+ADP
Sbjct: 409 SYIPKTLDSVKHAEEDVIRLTSGQNTEDMYYKTITGLKQALPRVQPASEL----EHDADP 468

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNES--KGGPGSSTETT 105
           +EQS+NLTGL NS EK TES SE DEESS+ES  + GP SSTETT
Sbjct: 469 IEQSENLTGLSNSCEKETESMSEADEESSDESEEEDGPNSSTETT 509

[Close]

BLAST of Spg028655 vs. ExPASy TrEMBL
Match: A0A0A0LQN2 (Serine/threonine-protein kinase RIO1 OS=Cucumis sativus OX=3659 GN=Csa_1G043280 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.9e-35
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQDT+DMYYKTITGL +ALP  +P S LKDEEEHNAD 
Sbjct: 415 SYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPMAQPTSDLKDEEEHNADM 474

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKGGPGSSTETT 105
           ++ S+++TGL NS EK TESTSEEDEESSNES+G PGSSTETT
Sbjct: 475 IKPSESITGLSNSCEKATESTSEEDEESSNESEGEPGSSTETT 517

[Close]

BLAST of Spg028655 vs. ExPASy TrEMBL
Match: A0A5D3BH21 (Serine/threonine-protein kinase RIO1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002840 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-31
Identity = 80/103 (77.67%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQDT+DMYYKTITGL +ALP  +P S  KDEEEHN D 
Sbjct: 415 SYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPIAQPTSDQKDEEEHNTDM 474

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKGGPGSSTETT 105
           +  S+N T L NS EK TESTSEEDEESSNES+G  GSSTETT
Sbjct: 475 IGPSENTTSLSNSCEKETESTSEEDEESSNESEGELGSSTETT 517

[Close]

BLAST of Spg028655 vs. ExPASy TrEMBL
Match: A0A1S3ATK0 (Serine/threonine-protein kinase RIO1 OS=Cucumis melo OX=3656 GN=LOC103482696 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-31
Identity = 80/103 (77.67%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQDT+DMYYKTITGL +ALP  +P S  KDEEEHN D 
Sbjct: 415 SYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPIAQPTSDQKDEEEHNTDM 474

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKGGPGSSTETT 105
           +  S+N T L NS EK TESTSEEDEESSNES+G  GSSTETT
Sbjct: 475 IGPSENTTSLSNSCEKETESTSEEDEESSNESEGELGSSTETT 517

[Close]

BLAST of Spg028655 vs. ExPASy TrEMBL
Match: A0A6J1GSU7 (Serine/threonine-protein kinase RIO1 OS=Cucurbita moschata OX=3662 GN=LOC111457183 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.4e-30
Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQ+T+DMYYKTITGL +ALPRV+P S+L    EH+ DP
Sbjct: 429 SYIPKTLDSVKHAEEDVIRLTSGQNTEDMYYKTITGLKQALPRVQPASEL----EHDTDP 488

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNES--KGGPGSSTETT 105
           +EQS+NLTGL NS EK TES SE DEESS+ES  + GP SSTETT
Sbjct: 489 IEQSENLTGLSNSCEKETESVSESDEESSDESEEEDGPSSSTETT 529

[Close]

BLAST of Spg028655 vs. ExPASy TrEMBL
Match: A0A6J1GSQ5 (Serine/threonine-protein kinase RIO1 OS=Cucurbita moschata OX=3662 GN=LOC111457183 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.4e-30
Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPKTLDSVKHAEEDVIRLTSGQ+T+DMYYKTITGL +ALPRV+P S+L    EH+ DP
Sbjct: 409 SYIPKTLDSVKHAEEDVIRLTSGQNTEDMYYKTITGLKQALPRVQPASEL----EHDTDP 468

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNES--KGGPGSSTETT 105
           +EQS+NLTGL NS EK TES SE DEESS+ES  + GP SSTETT
Sbjct: 469 IEQSENLTGLSNSCEKETESVSESDEESSDESEEEDGPSSSTETT 509

[Close]

BLAST of Spg028655 vs. TAIR 10
Match: AT2G24990.1 (Serine/threonine-protein kinase Rio1 )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPK+LD+V + E DV ++TSGQDT DM Y+TITGL  ALP++E      ++EE   + 
Sbjct: 411 SYIPKSLDAVNNPEADVAKITSGQDTGDMLYQTITGLKDALPKIEEQKIEVNDEEKEEEG 470

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNE 93
            E+    +   +  E+  E    ED++++ +
Sbjct: 471 EEEEDGESEEGSEEEESEEELGHEDKKAARK 501

[Close]

BLAST of Spg028655 vs. TAIR 10
Match: AT5G37350.1 (Serine/threonine-protein kinase Rio1 )

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-10
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPK+LD+V + E DV ++TSGQDT DM Y+TITGL  ALP+V+     + + E NA+ 
Sbjct: 410 SYIPKSLDAVNNPEADVAKITSGQDTGDMLYQTITGLKDALPKVD-----EQQIEVNAEE 469

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKG 96
            E            E+  E + EE EE S +  G
Sbjct: 470 EE------------EEEEEGSGEESEEESEKELG 486

[Close]

BLAST of Spg028655 vs. TAIR 10
Match: AT5G37350.2 (Serine/threonine-protein kinase Rio1 )

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-10
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 2   SYIPKTLDSVKHAEEDVIRLTSGQDTKDMYYKTITGLNKALPRVEPVSQLKDEEEHNADP 61
           SYIPK+LD+V + E DV ++TSGQDT DM Y+TITGL  ALP+V+     + + E NA+ 
Sbjct: 264 SYIPKSLDAVNNPEADVAKITSGQDTGDMLYQTITGLKDALPKVD-----EQQIEVNAEE 323

Query: 62  MEQSKNLTGLPNSYEKVTESTSEEDEESSNESKG 96
            E            E+  E + EE EE S +  G
Sbjct: 324 EE------------EEEEEGSGEESEEESEKELG 340

The following BLAST results are available for this feature:

BLAST of Spg028655 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652566.1	8.0e-35	80.58	hypothetical protein Csa_014123 [Cucumis sativus]	[more]
XP_004137539.1	8.0e-35	80.58	serine/threonine-protein kinase RIO1 [Cucumis sativus]	[more]
XP_038895087.1	8.0e-35	80.58	serine/threonine-protein kinase RIO1-like [Benincasa hispida] >XP_038895088.1 se...	[more]
XP_008437198.1	3.1e-31	77.67	PREDICTED: serine/threonine-protein kinase RIO1-like [Cucumis melo] >TYJ99080.1 ...	[more]
XP_023542500.1	7.7e-30	76.19	serine/threonine-protein kinase RIO1-like isoform X2 [Cucurbita pepo subsp. pepo...	[more]

BLAST of Spg028655 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN2	3.9e-35	80.58	Serine/threonine-protein kinase RIO1 OS=Cucumis sativus OX=3659 GN=Csa_1G043280 ...	[more]
A0A5D3BH21	1.5e-31	77.67	Serine/threonine-protein kinase RIO1 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3ATK0	1.5e-31	77.67	Serine/threonine-protein kinase RIO1 OS=Cucumis melo OX=3656 GN=LOC103482696 PE=...	[more]
A0A6J1GSU7	6.4e-30	75.24	Serine/threonine-protein kinase RIO1 OS=Cucurbita moschata OX=3662 GN=LOC1114571...	[more]
A0A6J1GSQ5	6.4e-30	75.24	Serine/threonine-protein kinase RIO1 OS=Cucurbita moschata OX=3662 GN=LOC1114571...	[more]

BLAST of Spg028655 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24990.1	1.1e-10	39.56	Serine/threonine-protein kinase Rio1	[more]
AT5G37350.1	3.3e-10	43.62	Serine/threonine-protein kinase Rio1	[more]
AT5G37350.2	3.3e-10	43.62	Serine/threonine-protein kinase Rio1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028655.1	Spg028655.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0106310	protein serine kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004712	protein serine/threonine/tyrosine kinase activity