Spg028645 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028645
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationscaffold7: 10874004 .. 10876942 (-)
RNA-Seq ExpressionSpg028645
SyntenySpg028645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTTTTGCTCTACATCGAAAGGTACCATCTTCCCAAAGTTACGCCACCACTTTATAGTCGTCAACTTGAATCTTATTGTCGTCATCGTCGTTATCGTTACTACACTTTTGCCATCCATTTCAAAAATCACGGAGGATATGATTTGTCTAGTTGTGGAGAATATGCAAAGGATTTGTCTATTTATATAGAAGGTTGAGAATAAAAAAATTATATATAAAAAAAGTAAAAAGGGAAATGAGAAGTTTTATTTGAATTTGAAACCATTAAAAGAGAAGCACAAAATGTTTGTTATGAGAGTAATAAAAACAAATAAATATTGATATAAAATATAAACGGAGGAGAGGTGGAATACAAAATGATGTAAAATGAGCCACATGACCCAACCACACTGAAGTGAAAAGTGGAGAGAGAAAGGAAGATAAATTGTAGAGAAGTGGTGGATGAGAGTGAAAATTGAAAAGTAATAAAGATTTTTATAATTTAAAAAACTCTTTCAAATTCTACAAAATTGAAAGAAGTAATAAGGAACATATTTGAAAGAACAAAACTTCCCTGCATATCGGTATGTAGGGACTCCATTAAAATCTTGACAATTAAGAAAGAGGAAGGGAGAAAATGAAAAAGTTTTTTTTATTTGTCAACATTTTAACATTGGGACATAAGAGTTCACTTTTAAGATAAGATAAGATATAAGATACAATGGATTTTGTTCAAAAAATAGAAAAAGAAAAAATAGATTTAGATTTAAATAAAACAAAAACGAATAAAAGAAGAACAAACCCTAAAACCCTCAGGTGAAAATTGCAAAAAATAGCAAAAGCCCAGCCTCACGCAGTTCTTCTTAACCCTGTTTCCTTCTCCAGCAGCTCAGTGCCGCCGTCGCCTCTCTCCTGGACACAGCTGCCGCCGCCGTCGTCTTTCTACCGTTTGTGCCGCCGCCACCGTCGTCTTTCTTCCGTTCGTGCCACCGCAGCCTCATTCGATTTTCTACTCCCTTGCTGTTATTGGTATTTTTCCAATCTCCATCTATGTCTTTCTGCTTACTTAAAAAACACAGATTAGAACTTAAGAAAGAATGGAGGAGTTGTTTGATTTTCATTTTTATAATCACAATAGCCGAATAGTAACAAAAAAAAAAGGGGAACAAAACGGGAAAGACTGAAAAATGGATGAGACGCAATCTTCTTCGATCGTCCGGAAGTCCTATAAAAAAAAAAGAAAAAACGGGAGAGACTGTTCTCGAGGGCTCAGTTGGTACATATACGATGGAAAGATTGTTTTGAGACACTGCATTATTGGCAGAGAGAAAAGGAATTGGATTGAAGAAAACCAAATCAGATCGAAACTCGAAAGTATTGCATTTGTTTGTGAATTGTTCTTCCTTCCATCAGGCAATTCAAATTAAGACTTAGTTTGAATGTAGGTAGATTGTAATAGACATTGATGAGTTATTGGATTAAAATATCTTGTAGGAAGCCAATGATTAGTTTTTTGATAATTGAAGTCTTGTCTCTTGAAATTCTCTAATGAACGGTGCTTGGAATGAGTAGAATCCATAGGTTTTTCTGAAATAAAAATGAGATTGTAATAGATGTTGATGAGTTATTAATTAAAATATTTTGTAGGAAGCCAATGAGTCGTTTTTTGAAAATTAAAGTCGTCTCTTGAAATTCTCTAATGAATGGTGCTTAGAAAGAGAAGAGACCATAGGTTTTTGTGCAATAAAAATGAGGAGGCACATTAATTATTAATGTATAGTAAATTGAAAAGGCCAGCTTAGTAAGATTGTGGGGCAACTATCTCGATCCAACCCACTTTTTCTTTTCCATGCATTTTGTCCTGATTCAAATATATACAATGGAATTAAGTAAAATAGACATATTTAAAATTTGAAGGGCAAAATGGGAGATAAAATTTCTTCCTATAGCCACTTTTCTCTATAGTATAGATATAGATATAGATTACCCTTTTTCCTTTTGTGCATTACGCAGCATCGGAGAAGAAGCTCACGAGCAGACTTGGGCGGTTGAGCTCACCCAACGAGTTCTCTAGTTGCAAGGCAAAATCCAATCTAAAACTTACCTGCTACTTTGATTTGAAGTGCCTCGAATCTCTGTTCCTCTAGTTCTTCATTTTTTCCTCCCCTTTCTCTCCCTCGGTGAATGTACTATTCCCCAAATTCTCAACACTTGCATAAAGAATTTCATTTTTGAACCTTTGGTTTGTTAACTGTCTACTAGTTACTTTGGCTAAAGTGAGTTTTCTGGTCGTAGTGCAGATTTTGTTATTCTAGGGTTCATGGCTTCATTGTTCAAGGTAAATTGCTTAATATTTAGCCCCACAACCAACTACTATTAGAATGAGCCTTATTCATTTTTCTGCCGTTAATGCCTTATATTTGATTGCATAGTCAAATTCATTTTTCGCCCAATTTGGTTTATTTGATTGCAGTTAATTCCTTTATTTCCATTTCAGATGATAAAGATATTTTCCTGCAGTTAATGCCTTATATTTGATTGCATAGTTAAATTCATTTTTCGCCCAATTGGGTTTATTGGGTGTATCAAAGATGTCTTTACAAGTTCTATTTGGACATGTTCGTTATCTATTGGAACAATACTCTTATTGATCAATTAACAACAAGTAGATCTACGCCAAGAGAATTAGTAATGTGCCAGGAGAAATTGGTAAAATGTGCTAGGAGCAATTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGCTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGATGAAAGATTTCGGGAGACTCTGCTTGGCAAATGGGTCGATTATTCAGGATGTTATGTGATTGTTGTAGGTCCCTCACTTTCATTACATCAATGTGGTTTGCCTCACGAAATCGCAATAGAGCTTTTTCGAGAGTTTATATGA

mRNA sequence

ATGAGTGTTTTGCTCTACATCGAAAGGTACCATCTTCCCAAAGTTACGCCACCACTTTATAGTCGTCAACTTGAATCTTATTGTCGTCATCGTCGTTATCGTTACTACACTTTTGCCATCCATTTCAAAAATCACGGAGGATATGATTTGTCTAGTTGTGGAGAATATGCAAAGGATTTGTCTATTTATATAGAAGCAGCTCAGTGCCGCCGTCGCCTCTCTCCTGGACACAGCTGCCGCCGCCGTCGTCTTTCTACCGTTTGTGCCGCCGCCACCGTCGTCTTTCTTCCGTTCGTGCCACCGCAGCCTCATTCGATTTTCTACTCCCTTGCTGTTATTGCATCGGAGAAGAAGCTCACGAGCAGACTTGGGCGGTTGAGCTCACCCAACGAGTTCTCTAGTTGCAAGGCAAAATCCAATCTAAAACTTACCTGCTACTTTGATTTGAAGTGCCTCGAATCTCTATTTTGTTATTCTAGGGTTCATGGCTTCATTGTTCAAGGAGCAATTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGCTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGATGAAAGATTTCGGGAGACTCTGCTTGGCAAATGGGTCGATTATTCAGGATGTTATGTGATTGTTGTAGGTCCCTCACTTTCATTACATCAATGTGGTTTGCCTCACGAAATCGCAATAGAGCTTTTTCGAGAGTTTATATGA

Coding sequence (CDS)

ATGAGTGTTTTGCTCTACATCGAAAGGTACCATCTTCCCAAAGTTACGCCACCACTTTATAGTCGTCAACTTGAATCTTATTGTCGTCATCGTCGTTATCGTTACTACACTTTTGCCATCCATTTCAAAAATCACGGAGGATATGATTTGTCTAGTTGTGGAGAATATGCAAAGGATTTGTCTATTTATATAGAAGCAGCTCAGTGCCGCCGTCGCCTCTCTCCTGGACACAGCTGCCGCCGCCGTCGTCTTTCTACCGTTTGTGCCGCCGCCACCGTCGTCTTTCTTCCGTTCGTGCCACCGCAGCCTCATTCGATTTTCTACTCCCTTGCTGTTATTGCATCGGAGAAGAAGCTCACGAGCAGACTTGGGCGGTTGAGCTCACCCAACGAGTTCTCTAGTTGCAAGGCAAAATCCAATCTAAAACTTACCTGCTACTTTGATTTGAAGTGCCTCGAATCTCTATTTTGTTATTCTAGGGTTCATGGCTTCATTGTTCAAGGAGCAATTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGCTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGATGAAAGATTTCGGGAGACTCTGCTTGGCAAATGGGTCGATTATTCAGGATGTTATGTGATTGTTGTAGGTCCCTCACTTTCATTACATCAATGTGGTTTGCCTCACGAAATCGCAATAGAGCTTTTTCGAGAGTTTATATGA

Protein sequence

MSVLLYIERYHLPKVTPPLYSRQLESYCRHRRYRYYTFAIHFKNHGGYDLSSCGEYAKDLSIYIEAAQCRRRLSPGHSCRRRRLSTVCAAATVVFLPFVPPQPHSIFYSLAVIASEKKLTSRLGRLSSPNEFSSCKAKSNLKLTCYFDLKCLESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
Homology
[Close]
BLAST of Spg028645 vs. NCBI nr
Match: XP_042013051.1 (DNA-directed RNA polymerase subunit beta' [Salvia splendens])

HSP 1 Score: 143.3 bits (360), Expect = 2.8e-30
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           E + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGKWVDY
Sbjct: 319 ELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKWVDY 378

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 379 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. NCBI nr
Match: YP_009671372.1 (RNA polymerase beta' subunit [Passiflora obovata] >QCX30650.1 RNA polymerase beta' subunit [Passiflora obovata])

HSP 1 Score: 141.7 bits (356), Expect = 8.2e-30
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 0 

Query: 155 LFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSG 214
           + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG
Sbjct: 321 VMCQEKLVQEAVDALLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSG 380

Query: 215 CYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
             VIVVGPSLSLHQCGLPHEIAIELF+ F+
Sbjct: 381 RSVIVVGPSLSLHQCGLPHEIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. NCBI nr
Match: QST20363.1 (RNA polymerase beta' subunit [Orostachys japonica])

HSP 1 Score: 141.7 bits (356), Expect = 8.2e-30
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           E + C  ++    V   +DNGIRGQPMRDGHNK YKSF+DVIEGK+ RFRETLLGK VDY
Sbjct: 323 ELIMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFADVIEGKEGRFRETLLGKRVDY 382

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Sbjct: 383 SGRSVIVVGPSLSLHQCGLPHEIAIELFQTFV 414

[Close]
BLAST of Spg028645 vs. NCBI nr
Match: YP_010036623.1 (RNA polymerase beta' subunit [Orostachys fimbriata] >QQW47164.1 RNA polymerase beta' subunit [Orostachys fimbriata])

HSP 1 Score: 141.7 bits (356), Expect = 8.2e-30
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           E + C  ++    V   +DNGIRGQPMRDGHNK YKSF+DVIEGK+ RFRETLLGK VDY
Sbjct: 314 ELIMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFADVIEGKEGRFRETLLGKRVDY 373

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Sbjct: 374 SGRSVIVVGPSLSLHQCGLPHEIAIELFQTFV 405

[Close]
BLAST of Spg028645 vs. NCBI nr
Match: YP_009862272.1 (RNA polymerase beta' subunit [Magnolia ovata] >QKD75135.1 RNA polymerase beta' subunit [Magnolia ovata])

HSP 1 Score: 141.7 bits (356), Expect = 8.2e-30
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           ES+ C  ++    V   +DNGIRGQPMRDGHNKAYKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 324 ESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKAYKSFSDVIEGKEGRFRETLLGKRVDY 383

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 384 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 415

[Close]
BLAST of Spg028645 vs. ExPASy Swiss-Prot
Match: P60287 (DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda OX=13333 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-32
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 319 ESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 378

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 379 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. ExPASy Swiss-Prot
Match: Q7YJX9 (DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus OX=212734 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-32
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 319 ESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 378

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 379 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. ExPASy Swiss-Prot
Match: A8SE82 (DNA-directed RNA polymerase subunit beta' OS=Ceratophyllum demersum OX=4428 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-32
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 319 ESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 378

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 379 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. ExPASy Swiss-Prot
Match: Q0G9M8 (DNA-directed RNA polymerase subunit beta' OS=Liriodendron tulipifera OX=3415 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-32
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 320 ESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 379

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 380 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 411

[Close]
BLAST of Spg028645 vs. ExPASy Swiss-Prot
Match: Q09G55 (DNA-directed RNA polymerase subunit beta' OS=Platanus occidentalis OX=4403 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-32
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 319 ESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 378

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 379 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. ExPASy TrEMBL
Match: A0A2U8U5Q8 (DNA-directed RNA polymerase subunit gamma OS=Banisteriopsis caapi OX=577683 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           E + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRET+LGK VDY
Sbjct: 319 ELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETMLGKRVDY 378

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Sbjct: 379 SGRSVIVVGPSLSLHQCGLPHEIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. ExPASy TrEMBL
Match: A0A4Y5QG88 (DNA-directed RNA polymerase subunit beta' OS=Passiflora obovata OX=378248 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 0 

Query: 155 LFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSG 214
           + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG
Sbjct: 321 VMCQEKLVQEAVDALLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSG 380

Query: 215 CYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
             VIVVGPSLSLHQCGLPHEIAIELF+ F+
Sbjct: 381 RSVIVVGPSLSLHQCGLPHEIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. ExPASy TrEMBL
Match: A0A6M8ATR4 (DNA-directed RNA polymerase subunit beta' OS=Magnolia ovata OX=152188 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           ES+ C  ++    V   +DNGIRGQPMRDGHNKAYKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 324 ESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKAYKSFSDVIEGKEGRFRETLLGKRVDY 383

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 384 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 415

[Close]
BLAST of Spg028645 vs. ExPASy TrEMBL
Match: A0A7U0KLG4 (RNA polymerase beta' subunit OS=Orostachys fimbriata OX=91113 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           E + C  ++    V   +DNGIRGQPMRDGHNK YKSF+DVIEGK+ RFRETLLGK VDY
Sbjct: 314 ELIMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFADVIEGKEGRFRETLLGKRVDY 373

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Sbjct: 374 SGRSVIVVGPSLSLHQCGLPHEIAIELFQTFV 405

[Close]
BLAST of Spg028645 vs. ExPASy TrEMBL
Match: A0A2H4YLP0 (DNA-directed RNA polymerase subunit beta' OS=Hydrangea heteromalla OX=860753 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.7e-30
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           E + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 323 ELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 382

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLPHEIAIELF+ F+
Sbjct: 383 SGRSVIVVGPSLSLHRCGLPHEIAIELFQTFV 414

[Close]
BLAST of Spg028645 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-32
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 153 ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDY 212
           E + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDY
Sbjct: 319 ELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 378

Query: 213 SGCYVIVVGPSLSLHQCGLPHEIAIELFREFI 245
           SG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Sbjct: 379 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFV 410

[Close]
BLAST of Spg028645 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 50.1 bits (118), Expect = 3.0e-06
Identity = 38/145 (26.21%), Postives = 62/145 (42.76%), Query Frame = 0 

Query: 96  LPFVPPQPHSIFYSLAVIASEKKLTSRLGRLSSPNEFSSCKAKSNLKLTCYFDLKCLESL 155
           LP  PP         A   SE  LT +L  +   NE    + K+        +       
Sbjct: 250 LPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHIISE------- 309

Query: 156 FCYSRVHGFIVQGAIDNGIRGQP-MRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSG 215
             ++++  F +    DN + GQP       +  KS    ++ K+ R R  L+GK VD+S 
Sbjct: 310 --FTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 369

Query: 216 CYVIVVGPSLSLHQCGLPHEIAIEL 240
             VI   P++++ + G+P  IA+ L
Sbjct: 370 RTVITPDPTINIDELGVPWSIALNL 385

The following BLAST results are available for this feature:
BLAST of Spg028645 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_042013051.12.8e-3072.83DNA-directed RNA polymerase subunit beta' [Salvia splendens][more]
YP_009671372.18.2e-3074.44RNA polymerase beta' subunit [Passiflora obovata] >QCX30650.1 RNA polymerase bet... [more]
QST20363.18.2e-3072.83RNA polymerase beta' subunit [Orostachys japonica][more]
YP_010036623.18.2e-3072.83RNA polymerase beta' subunit [Orostachys fimbriata] >QQW47164.1 RNA polymerase b... [more]
YP_009862272.18.2e-3073.91RNA polymerase beta' subunit [Magnolia ovata] >QKD75135.1 RNA polymerase beta' s... [more]
BLAST of Spg028645 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P602873.1e-3272.83DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda OX=13333 GN=rp... [more]
Q7YJX93.1e-3272.83DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus O... [more]
A8SE823.1e-3272.83DNA-directed RNA polymerase subunit beta' OS=Ceratophyllum demersum OX=4428 GN=r... [more]
Q0G9M83.1e-3272.83DNA-directed RNA polymerase subunit beta' OS=Liriodendron tulipifera OX=3415 GN=... [more]
Q09G553.1e-3272.83DNA-directed RNA polymerase subunit beta' OS=Platanus occidentalis OX=4403 GN=rp... [more]
BLAST of Spg028645 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2U8U5Q83.9e-3072.83DNA-directed RNA polymerase subunit gamma OS=Banisteriopsis caapi OX=577683 GN=r... [more]
A0A4Y5QG883.9e-3074.44DNA-directed RNA polymerase subunit beta' OS=Passiflora obovata OX=378248 GN=rpo... [more]
A0A6M8ATR43.9e-3073.91DNA-directed RNA polymerase subunit beta' OS=Magnolia ovata OX=152188 GN=rpoC1 P... [more]
A0A7U0KLG43.9e-3072.83RNA polymerase beta' subunit OS=Orostachys fimbriata OX=91113 GN=rpoC1 PE=4 SV=1[more]
A0A2H4YLP06.7e-3072.83DNA-directed RNA polymerase subunit beta' OS=Hydrangea heteromalla OX=860753 GN=... [more]
BLAST of Spg028645 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00180.11.1e-3271.74DNA-directed RNA polymerase family protein [more]
AT4G35800.13.0e-0626.21RNA polymerase II large subunit [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.40.20coord: 195..244
e-value: 1.2E-8
score: 37.4
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 166..242
NoneNo IPR availablePANTHERPTHR19376:SF54DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'coord: 166..242
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 166..243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028645.1Spg028645.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0008270 zinc ion binding