Spg028636 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028636
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S26
Location	scaffold7: 11447654 .. 11453245 (-)
RNA-Seq Expression	Spg028636
Synteny	Spg028636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGCGCACCTAGGTGTGCAAAGGCGTGCCCAGGCGAGCGCCCGATTGAAGGCACTCGCCTGGGCACTCTGTGAGGAGCACTCGGGCAAAATCGCCTCGCCCGTTGCCTGAGGCGTGTGCCTGGGTGCGCCTCGAAAAAACTAGGAATAAAGTTGACGTACTTTGTAAAACTGGTCAACAAATCTTGGATGCCATTCTTATTGCTTGAAAAGCAGTAAAGTGGTAATCTCTAAAGAAAATAGGTCTCAACTGAAACTGAAAGCATATTTTGAAAAAGCCTATGAGGTAGATTGGTCTTACCTTGACGACCTTAGAGCTTGAAGGCTTTAGATCAATGGATTCCAGATTGTCTCTTCGTCAACAGTATTATCAACGAGAAATCAAGGGATAAGAAGACCCTCAAAGGCTTCGAGTTAGGAAAGTAGAAAATAGAGGTTTTTCGTTTTCATACATGGATGACACCGTTAATTCTTATCCTTTATGAAGATGGTATGTTGGAAAATTGGTGATTAATCCTTGATCTCTTACTTAAAAGCTTCTAGCCTCTATCAAAACTTTCCAAATCCACTATCTGATAGGCCTTGATGTCAGTTATGAGGAAGCTTCTTCAAAGCCGGTTCTTGGTTGTAAGGTAGACCCTTTGTTGTTTAACTATCTTGGTTTCCTTCTTGGAGGTAACTCTAGATGTGGCCTTTTTTTGGGATCCAAATTGACTTCTCTAAAGAGAAATATGTTGCATGAGGCTCATATCATTAAACAATCTCTGGAAGAAACACTTTGGCGCCTGGGTTTTAAAAGCTGAAAAGTAATTTGTACATAGAATATCCATCACACAACCCGCCTCATTACCTATGAAACAAATAGCTCCATATAGATCGTTATGATTCTAGATTCTTGTTGATCTCTTCTCAAATGTTGATCAATGACGTATTCTATTTTATGCAGGTGCACTTCGTCCTTTATTCTTCTGATATTTACAACGTTTGGTTGGACAAGGCAAATGAATTGCTCAAGAATTAGTGCAGGCTGCGTTGGTAATGGTATCATTTTCCTTTACCATTTAAAGTTCTAGTGTTGTATTCATCTGCACACAGTCATGCTTTCTTATCAAATACTCTGAAGGGGGTTATTACAATAAACTCTGGATCCTTTCTCCAATGAAAGACAGAGTGGTAAAAATGCGGGCTGGAATCTTCTTAACCTATTGCTGCTAGCTTTTGTCTGTATATTTAATGCTTGGAAATGCGTACCTGATCAGACAAGGGGTTTAACCGGTGTTTCTAGTACTATCATAATACCATACTCTCTTTGTTTACACTATAATTTTGTCTTCATAAATATATCTTTAAATCTAGTGGAGCCGCATCAATTTTGAAAGGATGATGACGTGACAAGCAATAGAGAAAAAGAGTATCCATACTATGGTAGTATTGGAAATTTTCCCGAGGTTCAACCATTTTATAGTCGTGTACCCATGGTGTGATGCTTAATTTGTTGCGTTTGGCCTGTGTGCAGCACCATTTACCACAAATGTACGTGAGAAACATGAAAATATGAAGAATCTATGCGAGGGTTGAGAGAGTTAAATGGCAATTTGGATATGTTTGTAGTAAGCACTTTCAAATTGGGTGGAAGTTTGAACACCAAAAGGAAAACGAACAACCTGTGAACACCATTAACTGCAACATCTTTCTTCTCTCCCCTTTTGTAGCAAGAGATTGCTCATTCATGTTGATGGAATAGGTTACATTCTTCCAATCAGTGACTTGATAATGAAGGAAGACTGTCTCAAAGAAAAAAAAATATATATTAAAAAAAGAATGATGAAGAAGAACCTTCTGGGTTGAGATTACTTTTGTAAATATTATTCTTATGCATTTGCACATGTTTAGCTTTGTATTTGCGAAAAGATGGGAGGTTGGAATCCTCTCTCTCCCGTCTTCGCACATTCCAATTTAATTTTGTATTTGTTAAAAAGCAAGAGATTCAATTTTTTACTCACACAAACTAAAAAAATGTAATCCATATTCATTTTCTTTAGGGAAAATTGCAAAAACTAACATTGAATAATAGGGCTTGATCCAATCAAATTATTAAGGCTTTGTTTGATAATCATTTGGTTTTTTGGTTTTTGAAAATTAAGCTTCAAAACACTACTTCCACCAATGAATTTCCCATCTTCCCATGTTTTCAAAAACTGGGTCAAATTTTGAAAACTAAAAAAAATAGTTTTCAAAATTTTGTTTTTGTTTTTGAAATTTGACTAGGAATTCAAATGTGCCCTTAATGAAGATGAAAACTATTGCAAGGAAATTGGAAGATAACACATAATTTTCAAAAACCAAATGGTTATCAAAGGAGGTCTAAAATTTCAAGTAAGTCAATCATTTATATTAAATTGTTGCAATTAAACCCTTAAAGTCTACAAAATGCACAAACTACTTTTGAATTATAATATTTGTTCCAATCAATCTTTCAAATTATAAGATTGTTACAACCAAACATAAATTCCTTTACGTCAATTTTTGGTTCTTAAATTGAGATGACAGCTCAACATCGATCTAAAACTAAAATTTTTTAATTGTTAATTTTATACTTTTTCATATTTCATAAAATTAAAAAAAAAAAAAAAAAGATTACCTATAACAATTCAATAATTGGAGAGATCATTTGTGTATTTTGTTAGGTTTAAGTGCTCAATTGTATAATTTCATGAGTTTGGAAGGATATTTGAACAAATTGTAAAAGTTTGAGATGGTAGGGGTTAGGGTGTTTTTTGCAATTTTTTCTTTTTCTTCATTGGTTGGGGCTCGGCGGGACCGAAGATATATAAAGCATTTACCGGTACAAGCCCTCGAACTCTTCTCACACACAACATTTGCTCACAAAACCCTAATCGGCTGCTGCGTCTCTTTCTCTCTGCTTCAAGATCCAGAGCTTTGATACAATGGTAAGATCATTCCTCCATTACCTTGTCCTCTGAATCTACTTGTTGTAATTCGTTCTCCATTCATCTTTTCTGCCTCTGGTTCTTCCAGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCATGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGTATTGTTTTTTTTTTTTTTTTTTTTTGTATGAATAATTAGCTTTCGAGAATGTTTTTGCTTCTCATTTCGGGCAATTAATTTTATGATTAAGTGCAAGTATTGCTAGTGGATTCATGATTTGGTTGATCTAGCAATTGCGAGCAAGACGAGGGATAAGTATCCGCTAAGTTCAGGGGATATGATTTTTTATGTGGAATGTTTGTATCTCTATGAGTTGTGTGTGTGTGTGTTTTTGGTGGTTGTTGTTGAGAGATTGTTTGGGTGGTTTTCTTGATAAGTCAAGGAGCTAGATTTGATATTTAGCTACATTTTAAATTGCTTTTCGATTTTCGATGAAATACATTAATAGTAAGAAACAGATTAATAGCATTTTTTTTTTCCAGAATAATAGGGTAAGTGTTTACTTCAATAGTGGAATTCCCATAAGCCTTGAGGATATCCTAGGTGAAAGACTCTAACTTTTAGCCTCAAGGTTTATGGCCTCTTTGGACCATAGGACGCCTCCATGAATTTGTAATAAGGTTAAAGTCTTTAGATTAGAAGAATAATGTTAAATTTCCCTACTTCTATAAAAGGTTTTTTTTTTTTTTTTTTGAAATATTTATAAAAGGTTTATTTGTGTATGTAATGCTAATAAATGAGTTTTGGCAATCCAACCACTTACTACTTCGACTATCTAAGCTTCAAACACATTGAAGACAAAACCGTATAGAATAATTCAGTCCTTTTAGTGATAATAATAATAGTGGTGATGTTACGAATGACTTATTAGAACATTTATTTGAGTGGCAATTAACTTGTAATTTTTTCAATCCTTGATCATACAATTTTAGGATTTGTTACAATTTTTTAAAAATTAAAATTGGGCTTCTTTATCTAAAAAAATTAAAATTGGGCTTACTCCTCATACCTCTACTCCTCACCTATTCAAGAAGAAAGTCTTGAGGCCACCTTTAGCCTTTTAAAACATTGCCTAAACGCGCTAAAGTCTTGGATGAAGTGAATTTTGAGCGTCCGTGGACTATTGAGCCAGAGCAGTTTAATTTTATTTCAGCATTTTAATTTTGAGTGTCTATGAACTTGATGATTAAAGCTAACTTCTGAGTTTTGATTGATGAAAATAGGACAAGGCTATTAAGAGGTTTCTTGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTTCAAGAAGCCTGTGTCTATGACCGTAAGTTATTCTGTCCACTCCTGCTATCTTTTGGTTGCTTTATTTCGTATACCAATGATGTTTTTGTTCAGTGTCTGATATAGATTTTTGTTTTCTGTGCAGAATATACCCTCCCTAAGCTCTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATAGGCAACCACCACAGCGCTTCCTCAGACGCAGGGTTAGTCTTTGCTCAAAATATTTATAATTTTGATTCATAATGAAGTAATCATATTAACAGTGGATTTGATGAAGTTTATCTATTTTTATTTCTCTTATTACCCATACACAGGGTTGGTCTTTGCATAAAATATATATAGCTTTGATTTATCATGAAGTAGCCACGTTTCACAGTGCATTCCTTTTAGTTTGTTTATCTTTATTTACTCTTATCATTTGATGAACTTAAATTTCTATGATGGGTAGCAGAAAGAGTTTTGCATCTATTTCGTTTCTTATCAAAAAAAAAAAAATATTGTCCAATGCTTCTTTTCCAGCTACAATTTGTGAAAGAATATGATTAATTAATACGGAAACTTGGGAAACTTTTGCATTAGGTACTCTGGGTGCTGCATGCTTGTTACCAAATAAATACATTTATATTATATCTATGTATTAAGAGAATAATCCACTAGATGTCATTATATTTTAACTTGGTTCAAATGGTTCCCCTACATATCTCGCATATGTTAAGCTCCTACTCGTTTGGATTATGTAGATATTTGATTGTAATGATGATACCAACTATTTGGTAGGACTAGTGATGCTCATGTTGAAGATTAGCAACATATCTTATACTTATTAGTGCATGTTAAGCCTGTTTACTTCCTAGCCTTGAAATATTTTACATCATGATTATTATTTAAAGTATCATCTCTGCCTGTCTAATACTTTGACTCAGCAGTAATATTTGGGGTGGCCTCTGATTCTTTGCCTCCTTATAATGTTTCTGTGTTGGTTTCAGGATGATCAGCCGAAGCCTGGTCAGCCAGGTCAAGCACCTCGCCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAAAGAAACCTTTTAATGGCTTCTACGATCTTTTTATAGTCACTCTATTATAGTTTGGTTCTTTCGATGAAAGTGAATTTTAGAATCAATATGGTAGCTTACCCGACAATTTTGTGACTTTTAAGGAGCTAAAGACCACGTTTATTGAGTTATTT

mRNA sequence

ATGACAGGCGCACCTAGGTGTGCAAAGGCGTGCCCAGGCGAGCGCCCGATTGAAGGCACTCGCCTGGGCACTCTGTGCACTTCGTCCTTTATTCTTCTGATATTTACAACGTTTGGTTGGACAAGGCAAATGAATTGCTCAAGAATTAGTGCAGGCTGCGTTGCACCATTTACCACAAATACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCATGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTTGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTTCAAGAAGCCTGTGTCTATGACCAATATACCCTCCCTAAGCTCTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATAGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCGAAGCCTGGTCAGCCAGGTCAAGCACCTCGCCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAA

Coding sequence (CDS)

ATGACAGGCGCACCTAGGTGTGCAAAGGCGTGCCCAGGCGAGCGCCCGATTGAAGGCACTCGCCTGGGCACTCTGTGCACTTCGTCCTTTATTCTTCTGATATTTACAACGTTTGGTTGGACAAGGCAAATGAATTGCTCAAGAATTAGTGCAGGCTGCGTTGCACCATTTACCACAAATACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCATGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCTATTAAGAGGTTTCTTGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTTCAAGAAGCCTGTGTCTATGACCAATATACCCTCCCTAAGCTCTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATAGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCGAAGCCTGGTCAGCCAGGTCAAGCACCTCGCCCTGTTGGAGCTGGAAATCCTGCTCGTGTATAA

Protein sequence

MTGAPRCAKACPGERPIEGTRLGTLCTSSFILLIFTTFGWTRQMNCSRISAGCVAPFTTNTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPVGAGNPARV

Homology

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BLAST of Spg028636 vs. NCBI nr
Match: GAV62493.1 (LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-containing protein/Sod_Fe_C domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 258.8 bits (660), Expect = 3.5e-65
Identity = 129/155 (83.23%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 34  IFTTFGWTRQMNCSRISA-GCVAPFTTNTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKD 93
           I+    W   M C R+ A    A     TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKD
Sbjct: 213 IWKVINWNMLMKCMRMKALELGALCYAMTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKD 272

Query: 94  KAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR 153
           KAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR
Sbjct: 273 KAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR 332

Query: 154 NRQPPQRFLRRRDDQPKPGQPGQAPRPVGAGNPAR 188
           NR+PPQRF+RRRDD PKPGQPGQAPRP GAGNP R
Sbjct: 333 NREPPQRFIRRRDDIPKPGQPGQAPRPAGAGNPVR 367

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BLAST of Spg028636 vs. NCBI nr
Match: XP_022941874.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 4.6e-65
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPK---PGQPGQAP 180
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPK   PGQPGQAP
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAP 121

Query: 181 RPVGAGNPARV 189
           RPVGAGNPARV
Sbjct: 122 RPVGAGNPARV 132

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BLAST of Spg028636 vs. NCBI nr
Match: XP_004146441.1 (40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >XP_038891817.1 40S ribosomal protein S26-1-like [Benincasa hispida] >KAA0067538.1 hypothetical protein E6C27_scaffold50G00610 [Cucumis melo var. makuwa] >KGN50730.1 hypothetical protein Csa_005888 [Cucumis sativus] >TYK22411.1 hypothetical protein E5676_scaffold530G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 4.6e-65
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRR+DQ KPGQPGQAPRPV
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPV 121

Query: 181 GAGNPARV 189
           GAGNPARV
Sbjct: 122 GAGNPARV 129

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BLAST of Spg028636 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima] >KAG6600881.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031515.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-65
Identity = 125/128 (97.66%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRRDDQPKPGQPGQAPRP 
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPA 121

Query: 181 GAGNPARV 189
           GAG PARV
Sbjct: 122 GAGIPARV 129

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BLAST of Spg028636 vs. NCBI nr
Match: XP_023529394.1 (40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-65
Identity = 125/128 (97.66%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRRDDQPKPGQPGQAPRP 
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPKPGQPGQAPRPA 121

Query: 181 GAGNPARV 189
           GAG PARV
Sbjct: 122 GAGVPARV 129

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BLAST of Spg028636 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-54
Identity = 105/126 (83.33%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRP 
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPA 121

Query: 181 GAGNPA 187
           G G  A
Sbjct: 122 GPGAAA 127

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BLAST of Spg028636 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-54
Identity = 105/126 (83.33%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRP 
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRPA 121

Query: 181 GAGNPA 187
           G G  A
Sbjct: 122 GPGAAA 127

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BLAST of Spg028636 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.0e-54
Identity = 106/126 (84.13%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPRP 
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRPA 121

Query: 181 GAGNPA 187
           G G PA
Sbjct: 122 G-GAPA 126

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BLAST of Spg028636 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-48
Identity = 97/127 (76.38%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D 
Sbjct: 2   TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDG 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQP-GQAPRP 180
           Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF RRR+D+P+  +P G AP P
Sbjct: 62  YVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPGGGAPAP 121

Query: 181 VGAGNPA 187
            GA  PA
Sbjct: 122 GGAAAPA 127

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BLAST of Spg028636 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.5e-37
Identity = 80/119 (67.23%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y Q
Sbjct: 2   TFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRP 180
           Y LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF  +R    +PG PG  PRP
Sbjct: 62  YALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPG--PRP 117

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BLAST of Spg028636 vs. ExPASy TrEMBL
Match: A0A1Q3B3V8 (Superoxide dismutase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06016 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.7e-65
Identity = 129/155 (83.23%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 34  IFTTFGWTRQMNCSRISA-GCVAPFTTNTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKD 93
           I+    W   M C R+ A    A     TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKD
Sbjct: 213 IWKVINWNMLMKCMRMKALELGALCYAMTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKD 272

Query: 94  KAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR 153
           KAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR
Sbjct: 273 KAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR 332

Query: 154 NRQPPQRFLRRRDDQPKPGQPGQAPRPVGAGNPAR 188
           NR+PPQRF+RRRDD PKPGQPGQAPRP GAGNP R
Sbjct: 333 NREPPQRFIRRRDDIPKPGQPGQAPRPAGAGNPVR 367

[Close]

BLAST of Spg028636 vs. ExPASy TrEMBL
Match: A0A5A7VIJ0 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00060 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.2e-65
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRR+DQ KPGQPGQAPRPV
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPV 121

Query: 181 GAGNPARV 189
           GAGNPARV
Sbjct: 122 GAGNPARV 129

[Close]

BLAST of Spg028636 vs. ExPASy TrEMBL
Match: A0A0A0KM45 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.2e-65
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRR+DQ KPGQPGQAPRPV
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPV 121

Query: 181 GAGNPARV 189
           GAGNPARV
Sbjct: 122 GAGNPARV 129

[Close]

BLAST of Spg028636 vs. ExPASy TrEMBL
Match: A0A6J1FPQ0 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.2e-65
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPK---PGQPGQAP 180
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPK   PGQPGQAP
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAP 121

Query: 181 RPVGAGNPARV 189
           RPVGAGNPARV
Sbjct: 122 RPVGAGNPARV 132

[Close]

BLAST of Spg028636 vs. ExPASy TrEMBL
Match: A0A1S3C5M1 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.2e-65
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRR+DQ KPGQPGQAPRPV
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAKPGQPGQAPRPV 121

Query: 181 GAGNPARV 189
           GAGNPARV
Sbjct: 122 GAGNPARV 129

[Close]

BLAST of Spg028636 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-55
Identity = 105/126 (83.33%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRP 
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRPA 121

Query: 181 GAGNPA 187
           G G  A
Sbjct: 122 GPGAAA 127

[Close]

BLAST of Spg028636 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-55
Identity = 105/126 (83.33%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPRP 
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRPA 121

Query: 181 GAGNPA 187
           G G  A
Sbjct: 122 GPGAAA 127

[Close]

BLAST of Spg028636 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-55
Identity = 106/126 (84.13%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 61  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 120
           TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 121 YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQAPRPV 180
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPRP 
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRPA 121

Query: 181 GAGNPA 187
           G G PA
Sbjct: 122 G-GAPA 126

The following BLAST results are available for this feature:

BLAST of Spg028636 vs. NCBI nr


Match Name	E-value	Identity	Description
GAV62493.1	3.5e-65	83.23	LOW QUALITY PROTEIN: Sod_Fe_N domain-containing protein/Ribosomal_S26e domain-co...	[more]
XP_022941874.1	4.6e-65	97.71	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S riboso...	[more]
XP_004146441.1	4.6e-65	97.66	40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S rib...	[more]
XP_022943123.1	6.0e-65	97.66	40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso...	[more]
XP_023529394.1	6.0e-65	97.66	40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg028636 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49206	1.7e-54	83.33	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	1.7e-54	83.33	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
Q9LYK9	5.0e-54	84.13	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49216	1.1e-48	76.38	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	5.5e-37	67.23	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of Spg028636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1Q3B3V8	1.7e-65	83.23	Superoxide dismutase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06016 PE=3 SV...	[more]
A0A5A7VIJ0	2.2e-65	97.66	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KM45	2.2e-65	97.66	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1	[more]
A0A6J1FPQ0	2.2e-65	97.71	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=...	[more]
A0A1S3C5M1	2.2e-65	97.66	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1	[more]

BLAST of Spg028636 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40510.1	1.2e-55	83.33	Ribosomal protein S26e family protein	[more]
AT2G40590.1	1.2e-55	83.33	Ribosomal protein S26e family protein	[more]
AT3G56340.1	3.5e-55	84.13	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 60..173 e-value: 3.5E-57 score: 193.8
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 61..165 e-value: 2.1E-53 score: 179.3
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 61..187
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 132..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..188
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 61..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028636.1	Spg028636.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004784	superoxide dismutase activity