Spg028589 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028589
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	WD repeat-containing protein 43
Location	scaffold7: 13675588 .. 13676669 (-)
RNA-Seq Expression	Spg028589
Synteny	Spg028589

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAGCCTTTTGGGGTGGGTATGTCGGCTGGTATGTGGTCAATGGGCTTGGCCTTTTCTGGTGGTGGTAAGGTAGTGGGCAGGTGGCAGATGTCGGCGCGCTTTTTGGAGGTAAGTAGTCAATGGGCTTGGCCTTTTGTGGAGGTGGTGGGATATTGGTCACCGAAGAGTGGGATATTTTTCCTATTTTAAAAATGGTTGTCTGTGTCGTGTTGTATCCGTGTTTCGTGCCTGTATCCGTGTTTCTTAGGTTAGAGCATGTTTGAGAGTAATTTTGGAAATAGTGATTTTAGTGAAAATGGGTTGTTTATAAGTGATTTATTAATAGTGATTTTCACGGGATCATTTTAATATTTGATTGATTTTCATACCGTCAAAATTGATTTTGATAATGAAGGCATGTCTAAGAGTAATTTTGAACCTAACAAGTGATTTTAACCAATTTAAAAGTCGAACTCTAACATGCTCTTAATATTTTTACAAGAAATCACTAGAAAGGATAGCATTTCTTTTTTTTTTTTTTTTTTTTAAATTAAAACAAGAAAAGATATTTCAGAGTTGATAGATGGTTTTCTTTTTTCTCTTCCAGATGACTAAATCCAAAGAAACTGCGGTTCAATCTCTTCTTCAATTATCAGGTCGATTGCAACTGGTGTTGGCACAAGTGAGTTATTTCCACATTCTTTTAGGCATTTTTATTTTATGAGTGTTCTTGAAAAGCTTATGTTGGGTTGCATTACTTTGCATATTTGACAGATTGAAAGGGCATCGGCCAACAAAACCGATCAAATGATACGCCAGAATCACGAAATAGATAGAAGTGAGAGTGACGATGACGAAGACGGAGATGAAGAAGTCGACGATGTTCTTTACGGGGAAGAAGAATATGAATCTGAATTAAGTAGTGATGATGAGAATTAGATTCTTTCTATCATGTTGTAATGATCAATTTTGGGAAATCAAATAGGCTTTGGTTATATACTTAGCTGTTAATTTGTAATGATCGATTATGAATTTCGACAATATGAGTTAAATTTTGACCTATGAAATTACCTTCCCATCATCTCTGAGCTAAAAAA

mRNA sequence

ATGGGCAAGCCTTTTGGGGTGGGTATGTCGGCTGGTATGTGGTCAATGGGCTTGGCCTTTTCTGGTGGTGGTAAGATGACTAAATCCAAAGAAACTGCGGTTCAATCTCTTCTTCAATTATCAGGTCGATTGCAACTGGTGTTGGCACAAATTGAAAGGGCATCGGCCAACAAAACCGATCAAATGATACGCCAGAATCACGAAATAGATAGAAGTGAGAGTGACGATGACGAAGACGGAGATGAAGAAGTCGACGATGTTCTTTACGGGGAAGAAGAATATGAATCTGAATTAAGTAGTGATGATGAGAATTAG

Coding sequence (CDS)

ATGGGCAAGCCTTTTGGGGTGGGTATGTCGGCTGGTATGTGGTCAATGGGCTTGGCCTTTTCTGGTGGTGGTAAGATGACTAAATCCAAAGAAACTGCGGTTCAATCTCTTCTTCAATTATCAGGTCGATTGCAACTGGTGTTGGCACAAATTGAAAGGGCATCGGCCAACAAAACCGATCAAATGATACGCCAGAATCACGAAATAGATAGAAGTGAGAGTGACGATGACGAAGACGGAGATGAAGAAGTCGACGATGTTCTTTACGGGGAAGAAGAATATGAATCTGAATTAAGTAGTGATGATGAGAATTAG

Protein sequence

MGKPFGVGMSAGMWSMGLAFSGGGKMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN

Homology

[Close]

BLAST of Spg028589 vs. NCBI nr
Match: KAG6593991.1 (WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEV 84
           K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED DEEV
Sbjct: 548 KITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDED-DEEV 607

Query: 85  DDVLYGEEEYESELSSDDEN 105
           DDVLYGEEEYESELSSD+EN
Sbjct: 608 DDVLYGEEEYESELSSDNEN 626

[Close]

BLAST of Spg028589 vs. NCBI nr
Match: XP_022930515.1 (WD repeat-containing protein 43 [Cucurbita moschata])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEV 84
           K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED DEEV
Sbjct: 548 KITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDED-DEEV 607

Query: 85  DDVLYGEEEYESELSSDDEN 105
           DDVLYGEEEYESELSSD+EN
Sbjct: 608 DDVLYGEEEYESELSSDNEN 626

[Close]

BLAST of Spg028589 vs. NCBI nr
Match: XP_023515262.1 (WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-20
Identity = 67/83 (80.72%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDED---GD 84
           K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED    D
Sbjct: 547 KITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDEDEGKDD 606

Query: 85  EEVDDVLYGEEEYESELSSDDEN 105
           EEVDDVLYGEEEYESELSSD+EN
Sbjct: 607 EEVDDVLYGEEEYESELSSDNEN 629

[Close]

BLAST of Spg028589 vs. NCBI nr
Match: KAG7026332.1 (WD repeat-containing protein 43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-20
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEV 84
           K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED D+EV
Sbjct: 537 KITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDED-DKEV 596

Query: 85  DDVLYGEEEYESELSSDDEN 105
           DDVLYGEEEYESELSSD+EN
Sbjct: 597 DDVLYGEEEYESELSSDNEN 615

[Close]

BLAST of Spg028589 vs. NCBI nr
Match: XP_023000148.1 (WD repeat-containing protein 43 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 4.7e-19
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEV 84
           K TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DE  DEEV
Sbjct: 548 KFTKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDE--DEEV 607

Query: 85  DDVLYGEEEYESELSSDDEN 105
            DVLYGEEEYESELSSD+EN
Sbjct: 608 HDVLYGEEEYESELSSDNEN 625

[Close]

BLAST of Spg028589 vs. ExPASy TrEMBL
Match: A0A6J1EX27 (WD repeat-containing protein 43 OS=Cucurbita moschata OX=3662 GN=LOC111436946 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.1e-21
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEV 84
           K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED DEEV
Sbjct: 548 KITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDED-DEEV 607

Query: 85  DDVLYGEEEYESELSSDDEN 105
           DDVLYGEEEYESELSSD+EN
Sbjct: 608 DDVLYGEEEYESELSSDNEN 626

[Close]

BLAST of Spg028589 vs. ExPASy TrEMBL
Match: A0A6J1KLT8 (WD repeat-containing protein 43 OS=Cucurbita maxima OX=3661 GN=LOC111494431 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.3e-19
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEV 84
           K TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DE  DEEV
Sbjct: 548 KFTKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDE--DEEV 607

Query: 85  DDVLYGEEEYESELSSDDEN 105
            DVLYGEEEYESELSSD+EN
Sbjct: 608 HDVLYGEEEYESELSSDNEN 625

[Close]

BLAST of Spg028589 vs. ExPASy TrEMBL
Match: A0A5D3BUY7 (WD repeat-containing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00100 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.6e-19
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSES--DDDEDGDE 84
           K+TKSKETAVQ LLQLSGRLQLVLAQIERAS NKTDQ I+   EI  SES  D+DE+ DE
Sbjct: 547 KITKSKETAVQPLLQLSGRLQLVLAQIERASTNKTDQTIQDGLEIAGSESSDDNDEEEDE 606

Query: 85  EVDDVLYGEEEYESELSSDDEN 105
           EVDDVLYGEEE ESELSSDDEN
Sbjct: 607 EVDDVLYGEEENESELSSDDEN 628

[Close]

BLAST of Spg028589 vs. ExPASy TrEMBL
Match: A0A1S3C7V9 (LOW QUALITY PROTEIN: WD repeat-containing protein 43 OS=Cucumis melo OX=3656 GN=LOC103497817 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.6e-19
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSES--DDDEDGDE 84
           K+TKSKETAVQ LLQLSGRLQLVLAQIERAS NKTDQ I+   EI  SES  D+DE+ DE
Sbjct: 547 KITKSKETAVQPLLQLSGRLQLVLAQIERASTNKTDQTIQDGLEIAGSESSDDNDEEEDE 606

Query: 85  EVDDVLYGEEEYESELSSDDEN 105
           EVDDVLYGEEE ESELSSDDEN
Sbjct: 607 EVDDVLYGEEENESELSSDDEN 628

[Close]

BLAST of Spg028589 vs. ExPASy TrEMBL
Match: A0A6J1DS09 (WD repeat-containing protein 43 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022989 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEV 84
           K+TKSKETAVQ LLQLSGRLQLVLAQIERASAN TD  I++   ID +ESDDD   DEEV
Sbjct: 547 KITKSKETAVQPLLQLSGRLQLVLAQIERASANITDPAIQRGPVIDENESDDD---DEEV 606

Query: 85  DDVLYGEEEYESELSSDDEN 105
           DDVLYGEEEYESELSSD EN
Sbjct: 607 DDVLYGEEEYESELSSDXEN 623

[Close]

BLAST of Spg028589 vs. TAIR 10
Match: AT5G11240.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-11
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 25  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEV 84
           K+TKS+ TA+Q LLQLSGRLQLV AQI +A+ ++T Q+   + EID S     ED +E+V
Sbjct: 533 KITKSRGTALQQLLQLSGRLQLVTAQINKAAGSQT-QITAHDQEIDES-----EDEEEDV 592

Query: 85  DDVLYGEEEYESELSSDD 103
           +D  YGE + ES+LSSDD
Sbjct: 593 EDHFYGENDNESDLSSDD 604

The following BLAST results are available for this feature:

BLAST of Spg028589 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593991.1	1.5e-20	83.75	WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022930515.1	1.5e-20	83.75	WD repeat-containing protein 43 [Cucurbita moschata]	[more]
XP_023515262.1	3.3e-20	80.72	WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo]	[more]
KAG7026332.1	4.3e-20	82.50	WD repeat-containing protein 43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023000148.1	4.7e-19	81.25	WD repeat-containing protein 43 [Cucurbita maxima]	[more]

BLAST of Spg028589 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028589 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EX27	7.1e-21	83.75	WD repeat-containing protein 43 OS=Cucurbita moschata OX=3662 GN=LOC111436946 PE...	[more]
A0A6J1KLT8	2.3e-19	81.25	WD repeat-containing protein 43 OS=Cucurbita maxima OX=3661 GN=LOC111494431 PE=4...	[more]
A0A5D3BUY7	6.6e-19	80.49	WD repeat-containing protein 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C7V9	6.6e-19	80.49	LOW QUALITY PROTEIN: WD repeat-containing protein 43 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1DS09	1.9e-18	80.00	WD repeat-containing protein 43 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Spg028589 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11240.1	6.6e-11	55.13	transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..104
None	No IPR available	PANTHER	PTHR45290	OS03G0300300 PROTEIN	coord: 25..104
None	No IPR available	PANTHER	PTHR45290:SF1	OS03G0300300 PROTEIN	coord: 25..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028589.1	Spg028589.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus