Spg028580 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028580
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PMD domain-containing protein
Location	scaffold7: 11180069 .. 11182885 (-)
RNA-Seq Expression	Spg028580
Synteny	Spg028580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGTTTTTTATTTGCAGGTACAACGTCTTTCAACACGAGTACAAGGACATGTTCCTTGGACTTGTGTCGCCGCCCCGCCTTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTTCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGCCTTGTGTCACCGCCCTGCCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCTGCCGTTCAGCACGAGTGCAGAGACATGCTCCTTGGACTTGTGTCACCGCCCCGCTGTTCAGCACGAGTGCAGGGACATGTTCCTTGGACTTGTGTCACCGCCCCGCCGTTCAGCACGAGTGCAGGGACATGCTCTTTGGACTTGTGTCACCGCCCCGCCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCCCCGCCCCGCCCTTCAGCACGAGTGCAGGGACATGCTCCTTAGACTTGTGTCGCCGCCCCGCCTTTTAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCTGCCGTTTAGCACGAGTACAGGGACATGTTCCTTGGACTTTTGCCGCCGCCACGTCATTCAACATGAGTACAAGGACAATTGACCTCTTTGAACTCTTGTTGTTATGACGTTTCGCAACATTAGTCCTAGGAAATTTTCCTTGATGCATTTATTATTATTATTATCATTTTTAACCTATCTTCGTAAAAATCTTATTCTTTTCACTTGTGTTAACTTTCATTTCTTTAAATTTTGCAGAGTCATGGTGTGCTTTGCAGAACATATTGTCTCTGAAAAGACGTACCTTGTTCTTCTGAAAGACAACAATCAACCCATAAGAAGCGGACTCAGCTTCTTAGTAGAAGAGCCTAAAACTGGACGTCTTGCAGCCCCATGGCCCCCACCACTAAATTTGCATACCATTTCTGATTGGTCCGTAGAGAGGCCTCTAGACCAAGATTCTAAGGCTTGGTTTCTAGAATCTTCAATCCATACACGAAATCCTAATCGACATCCAGAGGTGACGTTAGGGCGCCGAATAATTGATGGATCAGTTCGTTGGGAATCCGCCTTGAAAATTTCAAGCGAATTTCTTTTCATTCCTCGTTATAGGGAGTGGTTGGAACTCGTCGTTGGTCGGAGTGAAGAGGTGCTTCAGACTTCTCATTTATTGGATGCAGTGGTGGCTTCCCTTTACACTTACGATCGAAACAACGACATAGTTCGGGCTTTTTGTGAAGCTTGGTGTCCTACAACCAATACACTTCACACTCGTGCGGGAGAACTTTCAATTTCCTTATGGGACCTTTGGACATTTGGGGGTCTGCCCATCAGAGGTAGATTTTATGAGGAAGATATCCCTAGCTTTAAAGAGCTAACTGGGTCCCACAACCAAGCAAAACATCTTCCCAAAAGTTGCGAACACCTTTTCCATGCATTCTACTTGCTTAGCGCTTCAAGAGCTGACCATTCCCACGTTCCAATCAGCTCCTGGACTTCCTTTTGGTTCAAAGGTGAACAGAGATATGCAAAGTCTCCTCAACGGAGACCCAAGAAGACCTCTCACCCTAGCACGACTCATAACCCAGACGGCACAAATATCAAGCGTCACGAGTGGTCAGGTGAGGAAAACAACTTGTTTCACGAGCTAAAGATTGACATGAGACATAGAGATCAGACATACCTGGCGGCTTTTTTATCTTGCTGACTTTGCGCCTTTGTGTTTCCCCAAGGGAATGCTAACCACATTCGTCCTAGTGTTGTCAAGGCTGCCAGCTTAATGGCTGAGGGGAAAACTTTCAGTCTTGCAGTCCCTGTCCTTGCCAACATCTACCACGGGCTAGGCAAAGTTTCCAATGCTTCTGTTTCAGTTGGACGCATAGATGCTTCTCTCCCCATGCATTACATTTTTGGTTGGCTCGCCCATTATTTTGGTACCAATTATAAGACTCCAGCAAAAGTTCGAGGTCCTAGCATGGTTGACTTTTCCGACGAAGGTGGAACTATATATTTTGATGAGCTCGAGGCTCGCGAACTAATCCATGGGGGTGCATCCATATCATGGCACACGAACCTCAGTAGGAACAAAAACGAGACCATGAAGTATGAAAAGACTGCGAAATTCATACCTTTTTCCTATTTTTCGAGCCTTCGCTCATGCTATCTGTCAGCGCGATGTAAAGATTCATTAGTTATCGAACCCTACAACCCCCACCGATTCGGCCGTCAGTTCGGCTTTTATCAAGACATACCTAATGACTTAGGAGAAGCTTTGCCCCTAGTCACCTTAGAAAACATTTTACACCACTGGCGGGTTTGCTTGCGAACTAATGCGGAGTTTCAAATATTTCTTCCAGCTCGTATATTGAATCCTCAGGACCATGTCACCTCACGTTATCGAAGTTGGTGGTCTGAAAAGTATGACAATTACCTAGGGGATGACATAAGTAAGTTGGTTGACAATATCATTCCCTCTCGAACCCAGCCTAAGCTACCTAAAAAAGGTGATTCTAAATTTGGGGGCAAAGAACTCCGTCTGCTCAAGGTCGCCAGGCCTCTAGATGATTCAACCGAAGAAGAGAGTCAAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAAGAAAGCTTCTGATCTTGATGACAAGTCCATCAAGAGTGCCTCTAATGCTTCACCATAA

mRNA sequence

TGTTGTTTTTTATTTGCAGGTACAACGTCTTTCAACACGAGTACAAGGACATGTTCCTTGGACTTGTGTCGCCGCCCCGCCTTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTTCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGCCTTGTGTCACCGCCCTGCCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCTGCCGTTCAGCACGAGTGCAGAGACATGCTCCTTGGACTTGTGTCACCGCCCCGCTGTTCAGCACGAGTGCAGGGACATGTTCCTTGGACTTGTGTCACCGCCCCGCCGTTCAGCACGAGTGCAGGGACATGCTCTTTGGACTTGTGTCACCGCCCCGCCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCCCCGCCCCGCCCTTCAGCACGAGTGCAGGGACATGCTCCTTAGACTTGTGTCGCCGCCCCGCCTTTTAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCTGCCGTTTAGCACGAGTACAGGGACATGTTCCTTGGACTTTTGCCGCCGCCACGTCATTCAACATGAAGTCATGGTGTGCTTTGCAGAACATATTGTCTCTGAAAAGACGTACCTTGTTCTTCTGAAAGACAACAATCAACCCATAAGAAGCGGACTCAGCTTCTTAGTAGAAGAGCCTAAAACTGGACGTCTTGCAGCCCCATGGCCCCCACCACTAAATTTGCATACCATTTCTGATTGGTCCGTAGAGAGGCCTCTAGACCAAGATTCTAAGGCTTGGTTTCTAGAATCTTCAATCCATACACGAAATCCTAATCGACATCCAGAGGTGACGTTAGGGCGCCGAATAATTGATGGATCAGTTCGTTGGGAATCCGCCTTGAAAATTTCAAGCGAATTTCTTTTCATTCCTCGTTATAGGGAGTGGTTGGAACTCGTCGTTGGTCGGAGTGAAGAGCTCGAGGCTCGCGAACTAATCCATGGGGGTGCATCCATATCATGGCACACGAACCTCAGTAGGAACAAAAACGAGACCATGAAGTATGAAAAGACTGCGAAATTCATACCTTTTTCCTATTTTTCGAGCCTTCGCTCATGCTATCTGTCAGCGCGATGTAAAGATTCATTAGTTATCGAACCCTACAACCCCCACCGATTCGGCCGTCAGTTCGGCTTTTATCAAGACATACCTAATGACTTAGGAGAAGCTTTGCCCCTAGTCACCTTAGAAAACATTTTACACCACTGGCGGGTTTGCTTGCGAACTAATGCGGAGTTTCAAATATTTCTTCCAGCTCGTATATTGAATCCTCAGGACCATGTCACCTCACGTTATCGAAGTTGGTGGTCTGAAAAGTATGACAATTACCTAGGGGATGACATAAGTAAGTTGGTTGACAATATCATTCCCTCTCGAACCCAGCCTAAGCTACCTAAAAAAGGTGATTCTAAATTTGGGGGCAAAGAACTCCGTCTGCTCAAGGTCGCCAGGCCTCTAGATGATTCAACCGAAGAAGAGAGTCAAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAAGAAAGCTTCTGATCTTGATGACAAGTCCATCAAGAGTGCCTCTAATGCTTCACCATAA

Coding sequence (CDS)

TGTTGTTTTTTATTTGCAGGTACAACGTCTTTCAACACGAGTACAAGGACATGTTCCTTGGACTTGTGTCGCCGCCCCGCCTTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTTCTTGGACTTGTGTCACCGCCCCGTCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGCCTTGTGTCACCGCCCTGCCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCTGCCGTTCAGCACGAGTGCAGAGACATGCTCCTTGGACTTGTGTCACCGCCCCGCTGTTCAGCACGAGTGCAGGGACATGTTCCTTGGACTTGTGTCACCGCCCCGCCGTTCAGCACGAGTGCAGGGACATGCTCTTTGGACTTGTGTCACCGCCCCGCCGTTCAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCCCCGCCCCGCCCTTCAGCACGAGTGCAGGGACATGCTCCTTAGACTTGTGTCGCCGCCCCGCCTTTTAGCACGAGTGCAGGGACATGCTCCTTGGACTTGTGTCACCGCCCTGCCGTTTAGCACGAGTACAGGGACATGTTCCTTGGACTTTTGCCGCCGCCACGTCATTCAACATGAAGTCATGGTGTGCTTTGCAGAACATATTGTCTCTGAAAAGACGTACCTTGTTCTTCTGAAAGACAACAATCAACCCATAAGAAGCGGACTCAGCTTCTTAGTAGAAGAGCCTAAAACTGGACGTCTTGCAGCCCCATGGCCCCCACCACTAAATTTGCATACCATTTCTGATTGGTCCGTAGAGAGGCCTCTAGACCAAGATTCTAAGGCTTGGTTTCTAGAATCTTCAATCCATACACGAAATCCTAATCGACATCCAGAGGTGACGTTAGGGCGCCGAATAATTGATGGATCAGTTCGTTGGGAATCCGCCTTGAAAATTTCAAGCGAATTTCTTTTCATTCCTCGTTATAGGGAGTGGTTGGAACTCGTCGTTGGTCGGAGTGAAGAGCTCGAGGCTCGCGAACTAATCCATGGGGGTGCATCCATATCATGGCACACGAACCTCAGTAGGAACAAAAACGAGACCATGAAGTATGAAAAGACTGCGAAATTCATACCTTTTTCCTATTTTTCGAGCCTTCGCTCATGCTATCTGTCAGCGCGATGTAAAGATTCATTAGTTATCGAACCCTACAACCCCCACCGATTCGGCCGTCAGTTCGGCTTTTATCAAGACATACCTAATGACTTAGGAGAAGCTTTGCCCCTAGTCACCTTAGAAAACATTTTACACCACTGGCGGGTTTGCTTGCGAACTAATGCGGAGTTTCAAATATTTCTTCCAGCTCGTATATTGAATCCTCAGGACCATGTCACCTCACGTTATCGAAGTTGGTGGTCTGAAAAGTATGACAATTACCTAGGGGATGACATAAGTAAGTTGGTTGACAATATCATTCCCTCTCGAACCCAGCCTAAGCTACCTAAAAAAGGTGATTCTAAATTTGGGGGCAAAGAACTCCGTCTGCTCAAGGTCGCCAGGCCTCTAGATGATTCAACCGAAGAAGAGAGTCAAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAAGAAAGCTTCTGATCTTGATGACAAGTCCATCAAGAGTGCCTCTAATGCTTCACCATAA

Protein sequence

CCFLFAGTTSFNTSTRTCSLDLCRRPAFQHECRDMLLGLVSPPRRSARVQGHAPWTCVTAPSFSTSAGTCFLDLCHRPVVQHECRDMLLGLVSPPCRSARVQGHAPWTCVTALPFSTSAETCSLDLCHRPAVQHECRDMFLGLVSPPRRSARVQGHALWTCVTAPPFSTSAGTCSLDLCPRPALQHECRDMLLRLVSPPRLLARVQGHAPWTCVTALPFSTSTGTCSLDFCRRHVIQHEVMVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVERPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYREWLELVVGRSEELEARELIHGGASISWHTNLSRNKNETMKYEKTAKFIPFSYFSSLRSCYLSARCKDSLVIEPYNPHRFGRQFGFYQDIPNDLGEALPLVTLENILHHWRVCLRTNAEFQIFLPARILNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDNIIPSRTQPKLPKKGDSKFGGKELRLLKVARPLDDSTEEESQNSTGDRHWKRAKRPKKASDLDDKSIKSASNASP

Homology

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BLAST of Spg028580 vs. NCBI nr
Match: TYK06433.1 (hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-58
Identity = 161/565 (28.50%), Postives = 215/565 (38.05%), Query Frame = 0


Query: 241 MVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVE 300
           MV F E  +S   +LV+L D NQP   GLS +VE+P  G  A  WP   N   +   SVE
Sbjct: 96  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVE 155

Query: 301 RPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYREWL 360
            PL +   AW L+SSIH   PN    +TLG+R+I+G  RW +  K+  EF F   Y EWL
Sbjct: 156 VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFFFTDCYWEWL 215

Query: 361 ELVVGRSE---------------------------------------------------- 420
           +LVVGR+                                                     
Sbjct: 216 DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVGDFYEERIPSFKELTFTSRDKTKCLPT 275

Query: 421 ------------------------------------------------------------ 480
                                                                       
Sbjct: 276 TCQYLFQASYDKPTTRKQKKASRSKSTQNPCGSKIQAREWSSRESMLFAELGIKDDLKDE 335

Query: 481 ------------------------------------------------------------ 540
                                                                       
Sbjct: 336 TYLAAFLSCWLCFFVFPQKGSFLRPRVFRTASLMAAGTIYSLAVLVLANIYHGLGLITKA 395

Query: 541 ----------------------------------------------------ELEARELI 577
                                                               E EARELI
Sbjct: 396 SNPIGHMEFHFSMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGKGESIYFGEYEARELI 455

[Close]

BLAST of Spg028580 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 5.5e-56
Identity = 165/611 (27.00%), Postives = 218/611 (35.68%), Query Frame = 0


Query: 241 MVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVE 300
           MV F E  +S   +LV+L D NQP   GLS +VE+P  G  A  WP   N   +   SVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 301 RPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYREWL 360
            PL +   AW L+SSIH   PN    +TLG+R+I+G  RW +  K+  EF F   Y EWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 361 ELVVGRSE---------------------------------------------------- 420
           ELVVGR+                                                     
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

Query: 421 ------------------------------------------------------------ 480
                                                                       
Sbjct: 181 DLWSFGGLPIKGDFYEERIPSFKELTSTSQDKTKCLPTTCQYLFQAYYSIVCTQRNDRST 240

Query: 481 ------------------------------------------------------------ 540
                                                                       
Sbjct: 241 SSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESM 300

Query: 541 ------------------------------------------------------------ 577
                                                                       
Sbjct: 301 LFAELGIRDDLKDETVANLMAAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMH 360

[Close]

BLAST of Spg028580 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 5.5e-56
Identity = 106/211 (50.24%), Postives = 142/211 (67.30%), Query Frame = 0


Query: 369 ELEARELIHGGASISWHTNL-SRNKNETMKYEKTAKFIPFSYFSSLRSCYLSARCKDSLV 428
           E EARELIH G  I WH NL +RNK+E M     + F+  SYF S+RSCYLS+RC+++ +
Sbjct: 433 EYEARELIHNGVRIQWHANLHNRNKHERMVDTHDSSFLQMSYFVSMRSCYLSSRCENTWI 492

Query: 429 IEPYNPHRFGRQFGFYQDIPNDLGEALPLVTLENILHHWRVCLRTNAEFQIFLPARILNP 488
           I  Y+P+RFGRQFGFYQD+PND+G   P +TL+NIL+HWR+C+R N   +++LP R L P
Sbjct: 493 ITSYSPYRFGRQFGFYQDLPNDIGGMPPAITLDNILYHWRICMRRNTLSELYLPVRSLEP 552

Query: 489 QDHVTSRYRSWWSEKYDNYLGDDISKLVDNIIPSRTQPKLPKKGDSKFGGKELRLLKVAR 548
             HVT R+  WW+ K+ NY  D+   LV + IP  +QP+LPK   S  GGKE+RL++   
Sbjct: 553 CKHVTQRFTDWWTTKHMNYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMA 612

Query: 549 P--LDDSTEEESQNSTGDRHWKRAKRPKKAS 577
           P   D+  E ES ++  DRHWKR  +  K S
Sbjct: 613 PNLEDEVNEHESDSNKSDRHWKRPLKKAKVS 643

[Close]

BLAST of Spg028580 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 4.7e-15
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 241 MVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVE 300
           MV F E  +S   +LV+  D NQP   GLS +VE+   G  A  WP   N   +   S+E
Sbjct: 39  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSME 98

Query: 301 RPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYRE 359
            PL +   AW L+SSIH   PN    +TLG+ +I+G  RW +  K+  EF F   Y E
Sbjct: 99  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRWGTVTKVPGEFCFTDYYWE 156

HSP 2 Score: 222.2 bits (565), Expect = 1.1e-53
Identity = 106/213 (49.77%), Postives = 144/213 (67.61%), Query Frame = 0


Query: 369 ELEARELIHGGASISWHTNL-SRNKNETMKYEKTAKFIPFSYFSSLRSCYLSARCKDSLV 428
           E EARELIH GA I WH NL +R+K+E M     + F+  SYF S+RSCYLS+RC+++ +
Sbjct: 427 EYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSFLQMSYFVSMRSCYLSSRCENTWI 486

Query: 429 IEPYNPHRFGRQFGFYQDIPNDLGEALPLVTLENILHHWRVCLRTNAEFQIFLPARILNP 488
           I  Y+ +RFGRQFGFYQD+PND+G   P +TL+NIL+H R+C R N   +++LPAR L P
Sbjct: 487 ITSYSSYRFGRQFGFYQDLPNDIGGMPPAITLDNILYHLRICTRCNTLSELYLPARSLEP 546

Query: 489 QDHVTSRYRSWWSEKYDNYLGDDISKLVDNIIPSRTQPKLPKKGDSKFGGKELRLLKVAR 548
             HVT ++  WW+ K+  Y  D+   LV ++IPS +QP+LPK   S  GGKE+RL++   
Sbjct: 547 CKHVTQQFTDWWTTKHGTYFEDNRHHLVTSVIPSPSQPRLPKNRGSNLGGKEIRLVEAMA 606

Query: 549 P-LDDSTEE---ESQNSTGDRHWKRAKRPKKAS 577
           P L++  +E   ES NS  DRHWKR  +  K S
Sbjct: 607 PNLEEEVKEHKDESNNSKSDRHWKRPLKKAKVS 639

[Close]

BLAST of Spg028580 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 2.8e-23
Identity = 62/146 (42.47%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 241 MVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVE 300
           MV F E  +S   +LV+L D NQP   GLS ++E+P  G  A  WP   N   +   SVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 301 RPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYREWL 360
            PL +   AW L+SSIH   PN    +TLG+R+I+G  RW +  K+  EF F   Y EWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEWL 120

Query: 361 ELVVGRSEELEARELIHGGASISWHT 387
           ELVVGR+  L     ++G  + S +T
Sbjct: 121 ELVVGRNTRLLYSTRLYGTVTTSLYT 146

HSP 2 Score: 216.5 bits (550), Expect = 6.3e-52
Identity = 103/213 (48.36%), Postives = 140/213 (65.73%), Query Frame = 0


Query: 369 ELEARELIHGGASISWHTNL-SRNKNETMKYEKTAKFIPFSYFSSLRSCYLSARCKDSLV 428
           E EARELIH GA I WH NL +R+K+E M     + F+  SYF S+RSCYLS+RC+++ +
Sbjct: 166 EYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSFLQMSYFVSMRSCYLSSRCENTWI 225

Query: 429 IEPYNPHRFGRQFGFYQDIPNDLGEALPLVTLENILHHWRVCLRTNAEFQIFLPARILNP 488
           I  Y+P+R GRQFGFYQD+PND+G   P +TL+NIL+HWR+C R    F+++LP R L P
Sbjct: 226 ITSYSPYRLGRQFGFYQDLPNDIGGMPPAITLDNILYHWRICTRRYTLFELYLPVRSLEP 285

Query: 489 QDHVTSRYRSWWSEKYDNYLGDDISKLVDNIIPSRTQPKLPKKGDSKFGGKELRLLKVAR 548
             HVT R+  WW+ K+  Y  D+   LV + I   +QP+LPK   S  GGKE+ L++   
Sbjct: 286 CKHVTQRFTDWWTTKHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMA 345

Query: 549 P-LDDSTEE---ESQNSTGDRHWKRAKRPKKAS 577
           P L++  +E   ES +S  DRHWKR  +  K S
Sbjct: 346 PNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVS 378

[Close]

BLAST of Spg028580 vs. ExPASy TrEMBL
Match: A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 7.5e-59
Identity = 161/565 (28.50%), Postives = 215/565 (38.05%), Query Frame = 0


Query: 241 MVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVE 300
           MV F E  +S   +LV+L D NQP   GLS +VE+P  G  A  WP   N   +   SVE
Sbjct: 96  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLLRLSVE 155

Query: 301 RPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYREWL 360
            PL +   AW L+SSIH   PN    +TLG+R+I+G  RW +  K+  EF F   Y EWL
Sbjct: 156 VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFFFTDCYWEWL 215

Query: 361 ELVVGRSE---------------------------------------------------- 420
           +LVVGR+                                                     
Sbjct: 216 DLVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVGDFYEERIPSFKELTFTSRDKTKCLPT 275

Query: 421 ------------------------------------------------------------ 480
                                                                       
Sbjct: 276 TCQYLFQASYDKPTTRKQKKASRSKSTQNPCGSKIQAREWSSRESMLFAELGIKDDLKDE 335

Query: 481 ------------------------------------------------------------ 540
                                                                       
Sbjct: 336 TYLAAFLSCWLCFFVFPQKGSFLRPRVFRTASLMAAGTIYSLAVLVLANIYHGLGLITKA 395

Query: 541 ----------------------------------------------------ELEARELI 577
                                                               E EARELI
Sbjct: 396 SNPIGHMEFHFSMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGKGESIYFGEYEARELI 455

[Close]

BLAST of Spg028580 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.7e-56
Identity = 165/611 (27.00%), Postives = 218/611 (35.68%), Query Frame = 0


Query: 241 MVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVE 300
           MV F E  +S   +LV+L D NQP   GLS +VE+P  G  A  WP   N   +   SVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 301 RPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYREWL 360
            PL +   AW L+SSIH   PN    +TLG+R+I+G  RW +  K+  EF F   Y EWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 361 ELVVGRSE---------------------------------------------------- 420
           ELVVGR+                                                     
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

Query: 421 ------------------------------------------------------------ 480
                                                                       
Sbjct: 181 DLWSFGGLPIKGDFYEERIPSFKELTSTSQDKTKCLPTTCQYLFQAYYSIVCTQRNDRST 240

Query: 481 ------------------------------------------------------------ 540
                                                                       
Sbjct: 241 SSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESM 300

Query: 541 ------------------------------------------------------------ 577
                                                                       
Sbjct: 301 LFAELGIRDDLKDETVANLMAAGTIYSLAVPVLANIYHGLGLITKASNPIGRMDFHFPMH 360

[Close]

BLAST of Spg028580 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.7e-56
Identity = 106/211 (50.24%), Postives = 142/211 (67.30%), Query Frame = 0


Query: 369 ELEARELIHGGASISWHTNL-SRNKNETMKYEKTAKFIPFSYFSSLRSCYLSARCKDSLV 428
           E EARELIH G  I WH NL +RNK+E M     + F+  SYF S+RSCYLS+RC+++ +
Sbjct: 433 EYEARELIHNGVRIQWHANLHNRNKHERMVDTHDSSFLQMSYFVSMRSCYLSSRCENTWI 492

Query: 429 IEPYNPHRFGRQFGFYQDIPNDLGEALPLVTLENILHHWRVCLRTNAEFQIFLPARILNP 488
           I  Y+P+RFGRQFGFYQD+PND+G   P +TL+NIL+HWR+C+R N   +++LP R L P
Sbjct: 493 ITSYSPYRFGRQFGFYQDLPNDIGGMPPAITLDNILYHWRICMRRNTLSELYLPVRSLEP 552

Query: 489 QDHVTSRYRSWWSEKYDNYLGDDISKLVDNIIPSRTQPKLPKKGDSKFGGKELRLLKVAR 548
             HVT R+  WW+ K+ NY  D+   LV + IP  +QP+LPK   S  GGKE+RL++   
Sbjct: 553 CKHVTQRFTDWWTTKHMNYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMA 612

Query: 549 P--LDDSTEEESQNSTGDRHWKRAKRPKKAS 577
           P   D+  E ES ++  DRHWKR  +  K S
Sbjct: 613 PNLEDEVNEHESDSNKSDRHWKRPLKKAKVS 643

[Close]

BLAST of Spg028580 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-15
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 241 MVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVE 300
           MV F E  +S   +LV+  D NQP   GLS +VE+   G  A  WP   N   +   S+E
Sbjct: 39  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSME 98

Query: 301 RPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYRE 359
            PL +   AW L+SSIH   PN    +TLG+ +I+G  RW +  K+  EF F   Y E
Sbjct: 99  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRWGTVTKVPGEFCFTDYYWE 156

HSP 2 Score: 222.2 bits (565), Expect = 5.6e-54
Identity = 106/213 (49.77%), Postives = 144/213 (67.61%), Query Frame = 0


Query: 369 ELEARELIHGGASISWHTNL-SRNKNETMKYEKTAKFIPFSYFSSLRSCYLSARCKDSLV 428
           E EARELIH GA I WH NL +R+K+E M     + F+  SYF S+RSCYLS+RC+++ +
Sbjct: 427 EYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSFLQMSYFVSMRSCYLSSRCENTWI 486

Query: 429 IEPYNPHRFGRQFGFYQDIPNDLGEALPLVTLENILHHWRVCLRTNAEFQIFLPARILNP 488
           I  Y+ +RFGRQFGFYQD+PND+G   P +TL+NIL+H R+C R N   +++LPAR L P
Sbjct: 487 ITSYSSYRFGRQFGFYQDLPNDIGGMPPAITLDNILYHLRICTRCNTLSELYLPARSLEP 546

Query: 489 QDHVTSRYRSWWSEKYDNYLGDDISKLVDNIIPSRTQPKLPKKGDSKFGGKELRLLKVAR 548
             HVT ++  WW+ K+  Y  D+   LV ++IPS +QP+LPK   S  GGKE+RL++   
Sbjct: 547 CKHVTQQFTDWWTTKHGTYFEDNRHHLVTSVIPSPSQPRLPKNRGSNLGGKEIRLVEAMA 606

Query: 549 P-LDDSTEE---ESQNSTGDRHWKRAKRPKKAS 577
           P L++  +E   ES NS  DRHWKR  +  K S
Sbjct: 607 PNLEEEVKEHKDESNNSKSDRHWKRPLKKAKVS 639

[Close]

BLAST of Spg028580 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-23
Identity = 62/146 (42.47%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 241 MVCFAEHIVSEKTYLVLLKDNNQPIRSGLSFLVEEPKTGRLAAPWPPPLNLHTISDWSVE 300
           MV F E  +S   +LV+L D NQP   GLS ++E+P  G  A  WP   N   +   SVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 301 RPLDQDSKAWFLESSIHTRNPNRHPEVTLGRRIIDGSVRWESALKISSEFLFIPRYREWL 360
            PL +   AW L+SSIH   PN    +TLG+R+I+G  RW +  K+  EF F   Y EWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEWL 120

Query: 361 ELVVGRSEELEARELIHGGASISWHT 387
           ELVVGR+  L     ++G  + S +T
Sbjct: 121 ELVVGRNTRLLYSTRLYGTVTTSLYT 146

HSP 2 Score: 216.5 bits (550), Expect = 3.1e-52
Identity = 103/213 (48.36%), Postives = 140/213 (65.73%), Query Frame = 0


Query: 369 ELEARELIHGGASISWHTNL-SRNKNETMKYEKTAKFIPFSYFSSLRSCYLSARCKDSLV 428
           E EARELIH GA I WH NL +R+K+E M     + F+  SYF S+RSCYLS+RC+++ +
Sbjct: 166 EYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSFLQMSYFVSMRSCYLSSRCENTWI 225

Query: 429 IEPYNPHRFGRQFGFYQDIPNDLGEALPLVTLENILHHWRVCLRTNAEFQIFLPARILNP 488
           I  Y+P+R GRQFGFYQD+PND+G   P +TL+NIL+HWR+C R    F+++LP R L P
Sbjct: 226 ITSYSPYRLGRQFGFYQDLPNDIGGMPPAITLDNILYHWRICTRRYTLFELYLPVRSLEP 285

Query: 489 QDHVTSRYRSWWSEKYDNYLGDDISKLVDNIIPSRTQPKLPKKGDSKFGGKELRLLKVAR 548
             HVT R+  WW+ K+  Y  D+   LV + I   +QP+LPK   S  GGKE+ L++   
Sbjct: 286 CKHVTQRFTDWWTTKHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMA 345

Query: 549 P-LDDSTEE---ESQNSTGDRHWKRAKRPKKAS 577
           P L++  +E   ES +S  DRHWKR  +  K S
Sbjct: 346 PNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVS 378

[Close]

BLAST of Spg028580 vs. TAIR 10
Match: AT1G32120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 25/72 (34.72%), Postives = 36/72 (50.00%), Query Frame = 0


Query: 428 IEPYNPHRFGRQFGFYQDIPNDLGEALPLVTLENILHHWRVCLRTNAEFQIFLPARILNP 487
           IEPY PHR   QFG+ QD+P  +   +    L      W+  +R  A+  ++ PAR+   
Sbjct: 396 IEPYYPHRVALQFGYDQDVPGVVPARIETPELA-----WKDYIRPIADGMLYFPARL--H 455

Query: 488 QDHVTSRYRSWW 500
           +  VT  Y  WW
Sbjct: 456 EADVTVGYIRWW 460

The following BLAST results are available for this feature:

BLAST of Spg028580 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06433.1	1.6e-58	28.50	hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa]	[more]
KAA0047478.1	5.5e-56	27.00	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
KAA0053466.1	5.5e-56	50.24	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]
KAA0053466.1	4.7e-15	39.83	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]
KAA0050516.1	2.8e-23	42.47	hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]	[more]

BLAST of Spg028580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3D7	7.5e-59	28.50	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TX42	2.7e-56	27.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UGW6	2.7e-56	50.24	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UGW6	2.3e-15	39.83	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7U8L3	1.3e-23	42.47	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Spg028580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32120.1	1.2e-05	34.72	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 527..565
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 521..591
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 270..367
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 370..541
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 370..541
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 270..367

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028580.1	Spg028580.1	mRNA