Spg028477 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028477
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Serine/threonine-protein kinase RIO1
Location	scaffold7: 14097888 .. 14099564 (-)
RNA-Seq Expression	Spg028477
Synteny	Spg028477

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTAACTAGTTTCCATACCCTTTACAATCTTGAGTAGTGAAAAAACATCCACATTAGCTTCAATATAGCTATATAAGCCACTCAGAATATGCTTAGCAATTAATAGTTTTCTCTGTTGTACATAGGGTTGGACTGTAGGAGCTTCTGTACTATAATCGTTAATATAAGTCTACCTCATGTTGCTAAGTGTACTACTTTAAATGCATATTCTCTCAACTAAATTTAAATATGTAGCTTTATAGGACTAAGCCAAGCCAAGGAAAGCCATAGCCTGTACAATTAGGCCAGTAAGATATTAAGCTTCATGAACAGGTTTTTTAGCCTGCTGAGATTGAAAAGTAAGAGGACATTTGTTTGAAAAACTCTTGTATGTTTTTGTTTTCAATTTTCTTATCCGAAGATTGTGATCAAATGACTCTTGAAAATGGATGTGATTGTATATCATTTAAAGCTATGGTTTCAGAAGATGTACTTTGATGAATGATGTTGCTGCCTTTATGATATACTTGTTAATCTAAAATTTTGTTTGTTGTATTTGTAGTTTGAGGACTTCAACATTAAAAGGTGAAAGCTTAAGAATTAATGTTTTGTTCATGGTGGTGTCAAATCTTTTGTTTCAAATTCAAGAATTTAGAATTGTTGTAATAGAATACTTGTTGTATTATTAAACTTCTTTTTTATGATCCTGGTTTATTTTTAAGTTTATTGTGATGGTTGTAATTGAAACATTTAAGAACAATATTTGTTATGTAGGTAAAAGACATTCAAATGTTTTTAATTATTAGTTTTTTATATTTATGTTCATTCATATATAATTTGAGAGAACAATTGAGTCTATCTAGAACTCAACTCATTTGGTGAAGAAGCTTATGGGTTTTTAAATTTAAATACAAAATTTCAGCAGGAACGAGAAGCTCTCATTTTAATTTTAGTAGGAAACTTTTATTTTTTCGGCAAGAAAAATTTGTTTAAATATTTTGAAAAAAAAAAACCTAGTGACCTAACTCCACCCAACCCAGAGAAAATGGGTTGGGTTGGGTTGGGTTGCCTTCATGAATAGGGTTGGTTGGGTTGGGGATTTGACCAACCCGGATTTTTGGGTTGGTCCAAAAAATACCCCTAACCTGGCCCAAATCGAACCGTGTACAGCCCTAGCAGCAAGGAGTTTACTATTTTCCCTGGTATTTCATTTGATTCTTCGTTTCTCCGTCCCCTATTTCAACTTCTATAACCTTCCTTTTCTGTTATTTTTATTTTTGCTCTTTCTGCAATGTTCTTATTAGCCCTAATATTTGTAAAAGGTTTGTTAATAGAATACATGATATATACCAACACGAGCATCAGTGGTTAACCTTAATATGTAACTCTTCTTAGGCAGTTAGGCCTTGTAATTCTTTGAGTCGAGTCCCTACCTTTTATTTTCTTTTTTTCTTTTGTGCGCAAACTTACCTGTATACAGATTCCTGAATGATCTTGTCAATGATACAATATCAACTCTAGTGGGAGCAGCAGGTATGTCTGCACTGGAAGAGAAGCTAGATGAAATCGAACCTTCAACAAGGAATAATGATGAGTTGGAGGAAGAAGATGAAGTAGAGGAGGACATTTCATGGTCATCAGACCCAGAGATTGGAGATGCATTGGATTGGTTGGATGCAAAAGAAGATATCTGA

mRNA sequence

ATGTCTGCACTGGAAGAGAAGCTAGATGAAATCGAACCTTCAACAAGGAATAATGATGAGTTGGAGGAAGAAGATGAAGTAGAGGAGGACATTTCATGGTCATCAGACCCAGAGATTGGAGATGCATTGGATTGGTTGGATGCAAAAGAAGATATCTGA

Coding sequence (CDS)

ATGTCTGCACTGGAAGAGAAGCTAGATGAAATCGAACCTTCAACAAGGAATAATGATGAGTTGGAGGAAGAAGATGAAGTAGAGGAGGACATTTCATGGTCATCAGACCCAGAGATTGGAGATGCATTGGATTGGTTGGATGCAAAAGAAGATATCTGA

Protein sequence

MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKEDI

Homology

[Close]

BLAST of Spg028477 vs. NCBI nr
Match: XP_008437198.1 (PREDICTED: serine/threonine-protein kinase RIO1-like [Cucumis melo] >TYJ99080.1 serine/threonine-protein kinase RIO1-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 8.1e-12
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          M A+EEK+DEIEPST NNDE  EEDE EED+SWSSD EIGDALDWLDAKED
Sbjct: 6  MPAVEEKVDEIEPSTMNNDESVEEDEGEEDLSWSSDSEIGDALDWLDAKED 56

[Close]

BLAST of Spg028477 vs. NCBI nr
Match: XP_022994310.1 (serine/threonine-protein kinase RIO1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          MSA+EEKL+EIEPSTRNN+E  EED+ EED+SWSSD EIG+ALDWLDAKED
Sbjct: 21 MSAVEEKLEEIEPSTRNNEEPVEEDDEEEDLSWSSDSEIGEALDWLDAKED 71

[Close]

BLAST of Spg028477 vs. NCBI nr
Match: XP_022994311.1 (serine/threonine-protein kinase RIO1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          MSA+EEKL+EIEPSTRNN+E  EED+ EED+SWSSD EIG+ALDWLDAKED
Sbjct: 1  MSAVEEKLEEIEPSTRNNEEPVEEDDEEEDLSWSSDSEIGEALDWLDAKED 51

[Close]

BLAST of Spg028477 vs. NCBI nr
Match: XP_023542500.1 (serine/threonine-protein kinase RIO1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          MSA+EEKL+EIEPSTRNN+E  EED+ EED+SWSSD EIG+ALDWLDAKED
Sbjct: 1  MSAVEEKLEEIEPSTRNNEEPVEEDDEEEDLSWSSDSEIGEALDWLDAKED 51

[Close]

BLAST of Spg028477 vs. NCBI nr
Match: XP_023542499.1 (serine/threonine-protein kinase RIO1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          MSA+EEKL+EIEPSTRNN+E  EED+ EED+SWSSD EIG+ALDWLDAKED
Sbjct: 21 MSAVEEKLEEIEPSTRNNEEPVEEDDEEEDLSWSSDSEIGEALDWLDAKED 71

[Close]

BLAST of Spg028477 vs. ExPASy TrEMBL
Match: A0A5D3BH21 (Serine/threonine-protein kinase RIO1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002840 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          M A+EEK+DEIEPST NNDE  EEDE EED+SWSSD EIGDALDWLDAKED
Sbjct: 6  MPAVEEKVDEIEPSTMNNDESVEEDEGEEDLSWSSDSEIGDALDWLDAKED 56

[Close]

BLAST of Spg028477 vs. ExPASy TrEMBL
Match: A0A1S3ATK0 (Serine/threonine-protein kinase RIO1 OS=Cucumis melo OX=3656 GN=LOC103482696 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          M A+EEK+DEIEPST NNDE  EEDE EED+SWSSD EIGDALDWLDAKED
Sbjct: 6  MPAVEEKVDEIEPSTMNNDESVEEDEGEEDLSWSSDSEIGDALDWLDAKED 56

[Close]

BLAST of Spg028477 vs. ExPASy TrEMBL
Match: A0A6J1JYS0 (Serine/threonine-protein kinase RIO1 OS=Cucurbita maxima OX=3661 GN=LOC111490077 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-12
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          MSA+EEKL+EIEPSTRNN+E  EED+ EED+SWSSD EIG+ALDWLDAKED
Sbjct: 1  MSAVEEKLEEIEPSTRNNEEPVEEDDEEEDLSWSSDSEIGEALDWLDAKED 51

[Close]

BLAST of Spg028477 vs. ExPASy TrEMBL
Match: A0A6J1K0V1 (Serine/threonine-protein kinase RIO1 OS=Cucurbita maxima OX=3661 GN=LOC111490077 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-12
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          MSA+EEKL+EIEPSTRNN+E  EED+ EED+SWSSD EIG+ALDWLDAKED
Sbjct: 21 MSAVEEKLEEIEPSTRNNEEPVEEDDEEEDLSWSSDSEIGEALDWLDAKED 71

[Close]

BLAST of Spg028477 vs. ExPASy TrEMBL
Match: A0A6J1GSU7 (Serine/threonine-protein kinase RIO1 OS=Cucurbita moschata OX=3662 GN=LOC111457183 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MSALEEKLDEIEPSTRNNDELEEEDEVEEDISWSSDPEIGDALDWLDAKED 52
          MSA+EEKL+EIEPSTRNN+E  EED+ E+D+SWSSD EIG+ALDWLDAKED
Sbjct: 21 MSAVEEKLEEIEPSTRNNEEPVEEDDEEDDLSWSSDSEIGEALDWLDAKED 71

The following BLAST results are available for this feature:

BLAST of Spg028477 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437198.1	8.1e-12	82.35	PREDICTED: serine/threonine-protein kinase RIO1-like [Cucumis melo] >TYJ99080.1 ...	[more]
XP_022994310.1	1.1e-11	80.39	serine/threonine-protein kinase RIO1-like isoform X1 [Cucurbita maxima]	[more]
XP_022994311.1	1.1e-11	80.39	serine/threonine-protein kinase RIO1-like isoform X2 [Cucurbita maxima]	[more]
XP_023542500.1	1.1e-11	80.39	serine/threonine-protein kinase RIO1-like isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_023542499.1	1.1e-11	80.39	serine/threonine-protein kinase RIO1-like isoform X1 [Cucurbita pepo subsp. pepo...	[more]

BLAST of Spg028477 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028477 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BH21	3.9e-12	82.35	Serine/threonine-protein kinase RIO1 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3ATK0	3.9e-12	82.35	Serine/threonine-protein kinase RIO1 OS=Cucumis melo OX=3656 GN=LOC103482696 PE=...	[more]
A0A6J1JYS0	5.1e-12	80.39	Serine/threonine-protein kinase RIO1 OS=Cucurbita maxima OX=3661 GN=LOC111490077...	[more]
A0A6J1K0V1	5.1e-12	80.39	Serine/threonine-protein kinase RIO1 OS=Cucurbita maxima OX=3661 GN=LOC111490077...	[more]
A0A6J1GSU7	1.1e-11	78.43	Serine/threonine-protein kinase RIO1 OS=Cucurbita moschata OX=3662 GN=LOC1114571...	[more]

BLAST of Spg028477 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028477.1	Spg028477.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0106310	protein serine kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004712	protein serine/threonine/tyrosine kinase activity