Spg028450 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028450
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	MuDRA-like transposase
Location	scaffold7: 13664635 .. 13666612 (-)
RNA-Seq Expression	Spg028450
Synteny	Spg028450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGACCCCCGGCGTCAATCATACATCGCAAACCAAAGAAGAGGCCTCAAAAAACGGTGATTAAAATCTCATCGGACGATCACGGGAAGGACAACCAACCGGGGCCGGAGGCGTCTGTCTGCTCCGAACCCAGCGTCAACCAACCAATAGAGATGATTAGGGATGGCGATTCTCCTGGTTCACCTTCTAATTCATGGGGCCGACAAGGGAAAAAACCTTGTGCTCATCGAGGTAGAGGACGAAGAGGAGGAGGATTCAGATGCTTCCACTGGCCCGCGTTGGCCCTTCGCTGGGGAAGGACCAAGTGTCGTGAGGAGTATGCCCCCGTTGTTCATAATCGACGACACTGATACGGAGTAGAACGTTGAAGAAGAAGATGACCACTTTTTTTTTTCTCTAAACTGTCGTATTTTTTATTTTCAATCTGTCGTAGCTGTTTTTTTTTTCTTTTACTGTCGTAGTTTTTTTTTATGTTTTTCTTATATATATATATATATATATATATATATATATATATATATATATAAATGAAAAGATTGTCCAAATGTGAAGAAGTGTCACGTATGCATGGGGGAAACCCAGAACCCTAATAAACGAACGTATAATAAGATAACACGCATAGGAAGACACGTAAACCCGGAACCCTAATAAACGAACGTATAATAAGACAACATGCCTAAGAATACATGTAAACTCGGAACCCTAATAAACGAACGAATATGGTTAAAAATCACTTTTGGTCCCTAAACTTTCATGAAAGTAACAATTTGGTCCCTGAACTTTGATTTGTAACGATTTAGTCCCTGTACTTTCAATTTTGTTGCAATTTAGTCCATGAACTTTAAGAAGTAACAATTTAGTCCCCATACTTTCAAATTTGTAACAATTTAGTCCCTATACTTTCAAATTTGTAACAATTTAATCCTTGTTGCAAAAAAAATCATCAATATTAAATGTCGATTTTTATTATTTAATGATTAAAATTTGTATCTTATTAACATATTGGGTCCCAAATTAGTTTATTGATCTATCTTGGTAAAAAATTTCATTAAATTTTTACATTAATTTTTCACGATACTAAATTGTTACAACCGTGGACCAGTAGACGGGCTGTTTGAAACCACATGCAACCCGCATGGACCAGTAGACGGGATGTTTGAACAACATGAACTGTCTTCTGTAGTTAGCCCGCGAAAGAAGCCAGTCATGTGGGAGGTGACGATCTACAGCCGGGCAGGTCCGTCGTACTATACAAACACACCCGGGCAGTCAACCCGCGGAAGTTAATGGAAGCCCGACATCTCAGCCGTGATTAGTACACAACCCGCGTATATCGGACTCGAGATGACGGTTCTGAGTCTTTAAAGGCATGCAAAGGATTGATTTGACGTACGAAGATTTTGCAGTATGAGGGAAGATCATGCGTTGATGACACCACAGTGAACCCTAATAAACAACATATTAAACACCATCTAACAACTAATGTCTACCCTTTCAAATCAATTTAAACTCGTTCCAACAGACGTGTGGGTAGTTAAACCTTGAACGTGTGAAAGGCGATTACATAGTAAGTAATCTTTCTTCTGAGAATAGTCAGACTTAGGGCAGCTTGTAGACATGGTGAAGAAATGTTTATTCGTTCGTTATGGTGGCGAGTGGGACGACGATGAGAATTGTTATCGTGGGGGTCGTTTGAAAGGTCTCTTCGTTTCAAGCAATGTTACGTACGCTAAACTGAAATGTCTTGTACACGAGGCCACGAACATTAGTTCTTCGCATTTCAATGTTGTACTGCGAGTGAAATGCAAGCTGGCGTATGAATCACCTCCGTTGTACATCTGCGATGACAACGATGTTCAATTCCTACTACAACACCCAGAATTGTTGAAGGTCCAACTGCTAGTGATGACAGAAATTAACAACGATCCGAATGCAGCTGGCAGCAGTCGGTATTCACAGACTGGAGATAAATAA

mRNA sequence

ATGGCTAGACCCCCGGCGTCAATCATACATCGCAAACCAAAGAAGAGGCCTCAAAAAACGGTGATTAAAATCTCATCGGACGATCACGGGAAGGACAACCAACCGGGGCCGGAGGCGTCTGTCTGCTCCGAACCCAGCGTCAACCAACCAATAGAGATGATTAGGGATGGCGATTCTCCTGGTTCACCTTCTAATTCATGGGGCCGACAAGGGAAAAAACCTTGTGCTCATCGAGACGGGCTGTTTGAAACCACATGCAACCCGCATGGACCAGTAGACGGGATGTTTGAACAACATGAACTGTCTTCTGTAGTTAGCCCGCGAAAGAAGCCAGTCATGTGGGAGGTGACGATCTACAGCCGGGCAGGCATGCAAAGGATTGATTTGACGTACGAAGATTTTGCATCAGACTTAGGGCAGCTTGTAGACATGGTGAAGAAATGTTTATTCGTTCGTTATGGTGGCGAGTGGGACGACGATGAGAATTGTTATCGTGGGGGTCGTTTGAAAGGTCTCTTCGTTTCAAGCAATGTTACGTACGCTAAACTGAAATGTCTTGTACACGAGGCCACGAACATTAGTTCTTCGCATTTCAATGTTGTACTGCGAGTGAAATGCAAGCTGGCGTATGAATCACCTCCGTTGTACATCTGCGATGACAACGATGTTCAATTCCTACTACAACACCCAGAATTGTTGAAGGTCCAACTGCTAGTGATGACAGAAATTAACAACGATCCGAATGCAGCTGGCAGCAGTCGGTATTCACAGACTGGAGATAAATAA

Coding sequence (CDS)

ATGGCTAGACCCCCGGCGTCAATCATACATCGCAAACCAAAGAAGAGGCCTCAAAAAACGGTGATTAAAATCTCATCGGACGATCACGGGAAGGACAACCAACCGGGGCCGGAGGCGTCTGTCTGCTCCGAACCCAGCGTCAACCAACCAATAGAGATGATTAGGGATGGCGATTCTCCTGGTTCACCTTCTAATTCATGGGGCCGACAAGGGAAAAAACCTTGTGCTCATCGAGACGGGCTGTTTGAAACCACATGCAACCCGCATGGACCAGTAGACGGGATGTTTGAACAACATGAACTGTCTTCTGTAGTTAGCCCGCGAAAGAAGCCAGTCATGTGGGAGGTGACGATCTACAGCCGGGCAGGCATGCAAAGGATTGATTTGACGTACGAAGATTTTGCATCAGACTTAGGGCAGCTTGTAGACATGGTGAAGAAATGTTTATTCGTTCGTTATGGTGGCGAGTGGGACGACGATGAGAATTGTTATCGTGGGGGTCGTTTGAAAGGTCTCTTCGTTTCAAGCAATGTTACGTACGCTAAACTGAAATGTCTTGTACACGAGGCCACGAACATTAGTTCTTCGCATTTCAATGTTGTACTGCGAGTGAAATGCAAGCTGGCGTATGAATCACCTCCGTTGTACATCTGCGATGACAACGATGTTCAATTCCTACTACAACACCCAGAATTGTTGAAGGTCCAACTGCTAGTGATGACAGAAATTAACAACGATCCGAATGCAGCTGGCAGCAGTCGGTATTCACAGACTGGAGATAAATAA

Protein sequence

MARPPASIIHRKPKKRPQKTVIKISSDDHGKDNQPGPEASVCSEPSVNQPIEMIRDGDSPGSPSNSWGRQGKKPCAHRDGLFETTCNPHGPVDGMFEQHELSSVVSPRKKPVMWEVTIYSRAGMQRIDLTYEDFASDLGQLVDMVKKCLFVRYGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLRVKCKLAYESPPLYICDDNDVQFLLQHPELLKVQLLVMTEINNDPNAAGSSRYSQTGDK

Homology

[Close]

BLAST of Spg028450 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-15
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 144 MVKKCLFVRYGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLR 203
           M +KC+  RYG  WD+++N Y GG L G+ V   + Y + K  ++   N++   F+VV+R
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

Query: 204 VKCKLAYESPPLYICDDNDVQFLLQHPELLKVQLLVMTEINNDPN 249
           VK KL +E+PPLYI +D+DV   L   +L +VQL V  +  +D N
Sbjct: 180 VKYKLDFEAPPLYIQNDDDVYIFLCLDDLSRVQLYVTLKSYHDEN 224

[Close]

BLAST of Spg028450 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 7.9e-15
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 145 VKKCLFVRYGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLRV 204
           + K LF+R+GG W+D+ N Y GG LKG+ V   VTY +LK  +     +  + +++V+RV
Sbjct: 3   IGKSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRV 62

Query: 205 KCKLAYESPPLYICDDNDVQFLLQHPELLKVQLLVMTEINNDPNAAGSSRYSQTGDK 262
              LA +SPP+++ DD+D++F L   ++ KV L V T I  +     SSR +Q G++
Sbjct: 63  PYHLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVST-IPRESIDIQSSRLNQDGEQ 118

[Close]

BLAST of Spg028450 vs. NCBI nr
Match: XP_038891939.1 (uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 40/96 (41.67%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 153 YGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLRVKCKLAYES 212
           YGG+WD++E+    G+L G+ V  ++ Y ++K  ++  TN+SSS F+++L+VK KL YE+
Sbjct: 45  YGGDWDENESSCIRGQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEA 104

Query: 213 PPLYICDDNDVQFLLQHPELLKVQLLVMTEINNDPN 249
           PP YI +D+ ++FLL   +L ++QL V  + N D N
Sbjct: 105 PPQYIRNDDGIRFLLFREDLSRLQLSVTLKSNVDEN 140

[Close]

BLAST of Spg028450 vs. NCBI nr
Match: XP_038891938.1 (uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 40/96 (41.67%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 153 YGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLRVKCKLAYES 212
           YGG+WD++E+    G+L G+ V  ++ Y ++K  ++  TN+SSS F+++L+VK KL YE+
Sbjct: 76  YGGDWDENESSCIRGQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEA 135

Query: 213 PPLYICDDNDVQFLLQHPELLKVQLLVMTEINNDPN 249
           PP YI +D+ ++FLL   +L ++QL V  + N D N
Sbjct: 136 PPQYIRNDDGIRFLLFREDLSRLQLSVTLKSNVDEN 171

[Close]

BLAST of Spg028450 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-10
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 144 MVKKCLFVRYGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLR 203
           M +KC+ + Y G WD+++N Y GG L G+ V   + Y +LK  ++   NIS   F+VV+R
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

Query: 204 VKCKLAYESPPLYI 218
           VK KL +E+PP YI
Sbjct: 293 VKYKLDFEAPPHYI 306

[Close]

BLAST of Spg028450 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 145 VKKCLFVRYGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLRV 204
           + K LF+R+GG W+D+ N Y GG LKG+ V   VTY +LK  +     +  + +++V+RV
Sbjct: 3   IGKSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRV 62

Query: 205 KCKLAYESPPLYICDDNDVQFLLQHPELLKVQLLVMTEINNDPNAAGSSRYSQTGDK 262
              LA +SPP+++ DD+D++F L   ++ KV L V T I  +     SSR +Q G++
Sbjct: 63  PYHLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVST-IPRESIDIQSSRLNQDGEQ 118

[Close]

BLAST of Spg028450 vs. ExPASy TrEMBL
Match: A0A2I7YUI4 (MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 149 LFVRYGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLR--VKC 208
           + VRYGG WD+    Y GG LKG+ VS  +T+  L+  +++   +  S F+V++R   + 
Sbjct: 6   MLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIRCIYEI 65

Query: 209 KLAYESPPLYICDDNDVQFLLQHPELLKVQLLVMTE 243
           K+ +E+P   + +D D++F L     LKV L V  E
Sbjct: 66  KVEHEAPTFELSNDRDLKFYLLSENPLKVPLYVSFE 101

[Close]

BLAST of Spg028450 vs. ExPASy TrEMBL
Match: A0A6N0C346 (MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 149 LFVRYGGEWDDDENCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLR--VKC 208
           + VRYGG WD+    Y GG LKG+ VS  +T+  L+  +++   +  S F+V++R   + 
Sbjct: 6   MLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIRCIYEI 65

Query: 209 KLAYESPPLYICDDNDVQFLLQHPELLKVQLLVMTE 243
           K+ +E+P   + +D D++F L     LKV L V  E
Sbjct: 66  KVEHEAPTFELSNDRDLKFYLLSENPLKVPLYVSFE 101

[Close]

BLAST of Spg028450 vs. ExPASy TrEMBL
Match: A0A5C7IS68 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000759 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.7e-08
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 149 LFVRYGGEWDDDE---NCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLRVK 208
           L + Y G+WD        Y+GG  KG+ V  N+TYA+L   +H   N+  S F   L+  
Sbjct: 6   LIINYNGQWDKSTYGFYNYKGGSSKGMRVPKNLTYAELLERIHSLVNVDLSKFKFKLKSV 65

Query: 209 CKLAYESPPLYICDDNDVQFLLQHPELL-KVQLLVMTEINNDPNAA 251
            + +Y SP + I DDNDV+FLL    ++ +V + ++ +++  P  A
Sbjct: 66  FQTSYRSPLVDIKDDNDVEFLLCEDRVIPQVGVTLVKKVDQSPRGA 111

[Close]

BLAST of Spg028450 vs. ExPASy TrEMBL
Match: A0A5C7ISL0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_000754 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.7e-08
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 149 LFVRYGGEWDDDE---NCYRGGRLKGLFVSSNVTYAKLKCLVHEATNISSSHFNVVLRVK 208
           L + Y G+WD        Y+GG  KG+ V  N+TYA+L   +H   N+  S F   L+  
Sbjct: 6   LIINYNGQWDKSTYGFYNYKGGSSKGMRVPKNLTYAELLERIHSLVNVDLSKFKFKLKSV 65

Query: 209 CKLAYESPPLYICDDNDVQFLLQHPELL-KVQLLVMTEINNDPNAA 251
            + +Y SP + I DDNDV+FLL    ++ +V + ++ +++  P  A
Sbjct: 66  FQTSYRSPIVDIKDDNDVEFLLCEDRVIPQVGVTLVKKVDQSPRGA 111

The following BLAST results are available for this feature:

BLAST of Spg028450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888098.1	1.2e-15	40.95	uncharacterized protein LOC120078004 [Benincasa hispida]	[more]
XP_022154925.1	7.9e-15	38.46	uncharacterized protein LOC111022071 [Momordica charantia]	[more]
XP_038891939.1	1.1e-13	41.67	uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida]	[more]
XP_038891938.1	1.1e-13	41.67	uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida]	[more]
XP_038902319.1	4.5e-10	44.59	trichohyalin-like [Benincasa hispida]	[more]

BLAST of Spg028450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL08	3.8e-15	38.46	uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A2I7YUI4	1.6e-08	35.42	MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1	[more]
A0A6N0C346	1.6e-08	35.42	MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1	[more]
A0A5C7IS68	7.7e-08	33.96	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00075...	[more]
A0A5C7ISL0	7.7e-08	33.96	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_000754 PE=4 SV=1	[more]

BLAST of Spg028450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028450.1	Spg028450.1	mRNA