Spg028444 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028444
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold7: 18083029 .. 18083550 (+)
RNA-Seq Expression	Spg028444
Synteny	Spg028444

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCATCGATGGCTCTGCCTTCCCCATCTCTGGCTGGCCAAGCCGTGAAACTGTCCCCTGCCGCCTCTGACCTCCTCGGCGACGGTCGTGTCACCATGAGGAAAACCGTCGGCAAGCCCAAGCTCGTCTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCAACTACGGCTGGGACACCGTCGGCCTCTCTGCCGACCCCAAGACCTTCGCCAAGAACCGCGAGCTCGAAGTAATCCACTCGAGATGGGCCATGCTCGGGGCTCTCGGCTGCGTGTTCCTCGAGCTCCTCTCTCGCAACGACGTCAAATTTGGCGAGGCCGTGTGGTTCAAAGTCGGCTCGCAGATCTTCAGCGAAGGTGGGCTAGACTATTTGGGCAACCCGAGCCTAGTCCATGCTCCAGACCTCGTCGAAACGGGGAGGAGGGTTTCCTCCTCCCCATTCCAGCATTAA

mRNA sequence

ATGGCAGCTTCATCGATGGCTCTGCCTTCCCCATCTCTGGCTGGCCAAGCCGTGAAACTGTCCCCTGCCGCCTCTGACCTCCTCGGCGACGGTCGTGTCACCATGAGGAAAACCGTCGGCAAGCCCAAGCTCGTCTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCAACTACGGCTGGGACACCGTCGGCCTCTCTGCCGACCCCAAGACCTTCGCCAAGAACCGCGAGCTCGAAGTAATCCACTCGAGATGGGCCATGCTCGGGGCTCTCGGCTGCGTGTTCCTCGAGCTCCTCTCTCGCAACGACGTCAAATTTGGCGAGGCCGTGTGGTTCAAAGTCGGCTCGCAGATCTTCAGCGAAGGTGGGCTAGACTATTTGGGCAACCCGAGCCTAGTCCATGCTCCAGACCTCGTCGAAACGGGGAGGAGGGTTTCCTCCTCCCCATTCCAGCATTAA

Coding sequence (CDS)

ATGGCAGCTTCATCGATGGCTCTGCCTTCCCCATCTCTGGCTGGCCAAGCCGTGAAACTGTCCCCTGCCGCCTCTGACCTCCTCGGCGACGGTCGTGTCACCATGAGGAAAACCGTCGGCAAGCCCAAGCTCGTCTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCAACTACGGCTGGGACACCGTCGGCCTCTCTGCCGACCCCAAGACCTTCGCCAAGAACCGCGAGCTCGAAGTAATCCACTCGAGATGGGCCATGCTCGGGGCTCTCGGCTGCGTGTTCCTCGAGCTCCTCTCTCGCAACGACGTCAAATTTGGCGAGGCCGTGTGGTTCAAAGTCGGCTCGCAGATCTTCAGCGAAGGTGGGCTAGACTATTTGGGCAACCCGAGCCTAGTCCATGCTCCAGACCTCGTCGAAACGGGGAGGAGGGTTTCCTCCTCCCCATTCCAGCATTAA

Protein sequence

MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELLSRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLVETGRRVSSSPFQH

Homology

[Close]

BLAST of Spg028444 vs. NCBI nr
Match: XP_038901990.1 (chlorophyll a-b binding protein of LHCII type 1 [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 7.4e-78
Identity = 144/160 (90.00%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPSLAGQAVKLSP ASDLLGDGR+TMRKT GKPK +SSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGDGRITMRKTAGKPKPISSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. NCBI nr
Match: XP_008456347.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo] >KAA0054604.1 chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo var. makuwa] >TYK27568.1 chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 144/160 (90.00%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPSLAGQAVKLSP ASDLLG+GR+TMRKT GKPK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. NCBI nr
Match: XP_004145734.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucumis sativus] >KGN46826.1 hypothetical protein Csa_020847 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 4.8e-77
Identity = 143/160 (89.38%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPS AGQAVKLSP ASDLLG+GR+TMRKT GKPK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. NCBI nr
Match: KAG6570576.1 (hypothetical protein SDJN03_29491, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.0 bits (754), Expect = 4.1e-76
Identity = 142/160 (88.75%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPSLAGQAVKLSP+ASD+LG+ RVTMRKT G+PK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. NCBI nr
Match: XP_022944462.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata])

HSP 1 Score: 295.0 bits (754), Expect = 4.1e-76
Identity = 142/160 (88.75%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPSLAGQAVKLSP+ASD+LG+ RVTMRKT G+PK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy Swiss-Prot
Match: P12333 (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.7e-75
Identity = 132/160 (82.50%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MA+S+MAL SPSLAG+AVKL P AS+++G+GR+TMRKT GKPK V S SPWYGPDRVKYL
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGE PSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIH RWAMLGALGCVF ELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.2e-74
Identity = 132/160 (82.50%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAAS+MAL SPS AG+AVKLSP++S++ G+G+VTMRKT  K K VSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGE PSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIH RWAMLGALGCVF ELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy Swiss-Prot
Match: P04778 (Chlorophyll a-b binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB1.3 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 9.8e-73
Identity = 133/160 (83.12%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAAS+MAL SP+ AG+AVKLSPAAS++LG GRVTMRKTV KPK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPK-GPSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGE PSYLTGEFPG+YGWDT GLSADP+TFA+NRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFS+GGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSIL 159

[Close]

BLAST of Spg028444 vs. ExPASy Swiss-Prot
Match: P27496 (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB50 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.2e-72
Identity = 130/160 (81.25%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAA++MAL S S AG+AVKLSP++S++ G+G+VTMRKTV K K +SSGSPWYGPDRVKYL
Sbjct: 1   MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGE PSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIH RWAMLGALGCVF ELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy Swiss-Prot
Match: P27491 (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.8e-72
Identity = 130/160 (81.25%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           M AS+MAL SPS AG AVKLSP++S++ G+G+  MRKTV K K VSSGSPWYGPDRVKYL
Sbjct: 1   MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGE PSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIH RWAMLGALGCVF ELL
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy TrEMBL
Match: A0A5D3DVR3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00410 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.0e-78
Identity = 144/160 (90.00%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPSLAGQAVKLSP ASDLLG+GR+TMRKT GKPK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy TrEMBL
Match: A0A1S3C301 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496313 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.0e-78
Identity = 144/160 (90.00%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPSLAGQAVKLSP ASDLLG+GR+TMRKT GKPK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy TrEMBL
Match: A0A0A0KGD7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G139750 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.3e-77
Identity = 143/160 (89.38%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPS AGQAVKLSP ASDLLG+GR+TMRKT GKPK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy TrEMBL
Match: A0A6J1FVQ6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448911 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 142/160 (88.75%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPSLAGQAVKLSP+ASD+LG+ RVTMRKT G+PK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. ExPASy TrEMBL
Match: A0A6J1J6F4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483879 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.5e-76
Identity = 141/160 (88.12%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAASSMAL SPSLAGQAVKLSP+AS++LG+ RVTMRKT G+PK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASNILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFAKNRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           SRN VKFGEAVWFK GSQIFSEGGLDYLGNPSLVHA  ++
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 160

[Close]

BLAST of Spg028444 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 274.2 bits (700), Expect = 7.0e-74
Identity = 133/160 (83.12%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAAS+MAL SP+ AG+AVKLSPAAS++LG GRVTMRKTV KPK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPK-GPSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGE PSYLTGEFPG+YGWDT GLSADP+TFA+NRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFS+GGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSIL 159

[Close]

BLAST of Spg028444 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-73
Identity = 132/160 (82.50%), Postives = 144/160 (90.00%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAAS+MAL SP+ AG+AV LSPAAS++LG GRVTMRKTV KPK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPK-GPSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGE PSYLTGEFPG+YGWDT GLSADP+TFA+NRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFS+GGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSIL 159

[Close]

BLAST of Spg028444 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-73
Identity = 132/160 (82.50%), Postives = 144/160 (90.00%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAAS+MAL SP+ AG+AV LSPAAS++LG GRVTMRKTV KPK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPK-GPSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGE PSYLTGEFPG+YGWDT GLSADP+TFA+NRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFS+GGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSIL 159

[Close]

BLAST of Spg028444 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-72
Identity = 132/160 (82.50%), Postives = 144/160 (90.00%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MA+S+MAL SP+ AG+AVK  PAASD+LG GRVTMRKTV KPK   SGSPWYG DRVKYL
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPK-GPSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFA+NRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFS+GGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSIL 157

[Close]

BLAST of Spg028444 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 264.6 bits (675), Expect = 5.5e-71
Identity = 129/160 (80.62%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MAASSMALPSPSLAGQAVKLSPAASDLLGDGRVTMRKTVGKPKLVSSGSPWYGPDRVKYL 60
           MAAS+MAL SP+L G+AVKLSPAAS++ G GR+TMRK   KP    SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRK-ASKP-TGPSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGNYGWDTVGLSADPKTFAKNRELEVIHSRWAMLGALGCVFLELL 120
           GPFSGEPPSYLTGEFPG+YGWDT GLSADP+TFA+NRELEVIHSRWAMLGALGCVF ELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNDVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAPDLV 161
           +RN VKFGEAVWFK GSQIFS+GGLDYLGNPSLVHA  ++
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSIL 158

The following BLAST results are available for this feature:

BLAST of Spg028444 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901990.1	7.4e-78	90.00	chlorophyll a-b binding protein of LHCII type 1 [Benincasa hispida]	[more]
XP_008456347.1	1.7e-77	90.00	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo] >KAA00...	[more]
XP_004145734.1	4.8e-77	89.38	chlorophyll a-b binding protein of LHCII type 1-like [Cucumis sativus] >KGN46826...	[more]
KAG6570576.1	4.1e-76	88.75	hypothetical protein SDJN03_29491, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944462.1	4.1e-76	88.75	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata]	[more]

BLAST of Spg028444 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12333	4.7e-75	82.50	Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1...	[more]
P27495	5.2e-74	82.50	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P04778	9.8e-73	83.13	Chlorophyll a-b binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P27496	2.2e-72	81.25	Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P27491	2.8e-72	81.25	Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum OX=4097 GN...	[more]

BLAST of Spg028444 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DVR3	8.0e-78	90.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C301	8.0e-78	90.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KGD7	2.3e-77	89.38	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1FVQ6	2.0e-76	88.75	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6F4	7.5e-76	88.13	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Spg028444 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29930.1	7.0e-74	83.13	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	2.6e-73	82.50	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	2.6e-73	82.50	chlorophyll A/B-binding protein 2	[more]
AT2G34420.1	1.7e-72	82.50	photosystem II light harvesting complex gene B1B2	[more]
AT2G34430.1	5.5e-71	80.63	light-harvesting chlorophyll-protein complex II subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 58..166 e-value: 1.5E-36 score: 128.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..138 e-value: 1.2E-20 score: 74.7
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..159
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 1..159
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 50..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028444.1	Spg028444.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding