Spg028424 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028424
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	zf-RVT domain-containing protein
Location	scaffold7: 12371729 .. 12380927 (+)
RNA-Seq Expression	Spg028424
Synteny	Spg028424

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTCAAGTGCCGACAGCGAGACCCACGCTCGAAGGCCAGCCGTTGTTTCTTCTCCTTCGTTCTGGGCAAGCTCGAAATTTTCTCTCCCTCTCGTTTTCTTCATCCACGCGCAGTAGGTGTAGGTGGCCGTAGCAGCAACTCTCGTGAAGGCCTCTTGCAAGAGCGCGACTCTGGTGGATTTCCAGCGTGGGTCGCACGAGCCATCAGTTTCATCTCTTTCTCGTTCTCCCTCCTCGGGTTAATCGGCAACCGGTGAAAAGCAGCTTCGAATTTGGCGTTTCACATCTTTTTCAGCGTGTCAGACTCGATTGGTAAGCTTTCGGCACTAGCCCATGCTTAATCGCTCTCAAGAATGATTTACCCATTCGTTATCGTCTTCGAAATTTCAGAATTGGGTGTATTCCATTGCTGTCCAGCGGCATCTTGGGTTGAATTAGGTGTTCGGTGGATACCCATAGCTCGAAAGGTCTCAACTCAAGTTACCTATAGCCTAAGGAGTTTGTGTTTGTGAATTCGAATCTTATCAAACACGTTTCAGCAAGGATTCAGACCCTGTTTGGTAAGGTTCAGTGACTCTTAGCATACTTGGCTCATTCTGGTCTTGTTTAGAGTGTTTTAAAGTATGTTAGATCGGTCCCTAATCCTTAGAAACTCTTTGTTTTATAGATTCGAACTCTGCTGGACGCTTTTTAGCAAAGACCCAAATTTCCTTTGGGAAGTTAAGGCGGTAAGTCCCTTTTATATTCTTTGAATTTAATTTAGGGCGTTTTAGAGTCGCCTCTAACTTTTGGGTTTTCTTTGTTTGAAGTTTGATCCAACGCGAACTGTTTCGTATACTTCCAAGCAAGGATCAAGTTCGTGTTGACAAAGCTAGGAGGTAAGGTTTACTTAAATCTCTCTAATTGTGATTAGGTGCCTTTGGCTAGCTTTTGATGCTCGAATGTCTTTGTCTTAGGAAATTAGTCTTGCTCCAAGTCGTCGAGCTAGCCTTCAAGCTTGCATTGAGTTTGTTTGGTAAGAAACTCTTCCCTATGTACCTTTTAGGTTCTAATAGGGTGGTTAAGCTCAATTCTGATCTTTACATGTTATCCTTGATGTTAGGAGCTTGCCTAGTTTTGGTTTAGGGGCTCTTGGATTATCTTTGGAGCTTTTCATCTAGTTAAGGAGTGTTTAGAGCTTCCGGTAAGTAGTTTCTATCTGTTGAAGTCTGTTTGATTGCATGATGCACGCAGTTTGTTTAATCGCTTTATAATTATGCTCTTGTTTCTTGCTTTGATTATATATATATGTGTGTAAGTGCTTCTTGCTTCTGTGTTATATATATATATATATATATATGAGATATTCGAATAGCATGAACTGTTGTTGTGTGATGTTTGGTTGTTAAGCATGCTAGTTGTTGTGCTTTTATGAGTTAAGCATGAGTCGAGAGTATGTTGTTGCTGTATGTATATGCTTGGTGGGCATAGTACATGAGTCTAGAAGCATGATGCAGTGCATATGCATTCTAGGTAGTTTGGTGTGGTGTGTATATGCTTGGTGGGCATAGTACATGAGTCTAGAAGCATGTTGCAGGGCATATGCATTCTAGATAGTGGTAATAAAGAGGTCAGGGACCTGAACATGAAAGAAAGGCTAGTTGGGTGAATGTTAGTGCACCTCGGGTACAAATGGTCGAGGGGTGGCATATCACCAGTGGTTTAAGAGGAGCATCGAGGCCTTGGGTACAAATGATCAGGGATCGGTGTGATGAGTCTAAAAAGCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGATACAAATGGTCAAGGGTCGAACGTCGAGCTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCGGGGGACAGTGCGACTTGAAGGATCAGTCTTGGAGAGCCATATGAGGGCTAAATATGAGCGTTGAGTGAGCTCGTGGAGCTTGAGTGGTTAGCGAGTTGCATAGAGAGATGCATGAGTTATGGCTTAGGAGAGTTATTCACTTTACTAGCTTTTGAGCATGTCGTTGTGTTTACCGCTTTAAGAAACATGTTGTTTGCGCATGAAAAGCATGTTGTTTGCTTGGTTGCTGTTTGATGGCTTCTCAGGTAGGGGCTGCTTACCAGTACCTTAGTGTACTGACCCCCTCCCCTCTCTCTCCCCCCAACTACCAGATCTTGCAGGTTATGAGGACTGCGTGGACCATGGTGATGCAGAGGAGGCATATGAGGAAGAACCATAGCTAGTCTGCGTTGTTTTCCATTTTATTTTCATGTTGGATAGCTTGTTGCTTAACTTGGTTGGACAGCTGTTGTCCTGGTAGGTTCAGTTTTGATTATTCTTATTAAACTCTAGGTTTAGTGGTGCTTGTTTTAAAGAACTCTATCTATTCATTTAGTTAATAAGTAAGTTTGTTTCGAATGAATTGATGTTATAAGCTTTGTTTAAGTTGTGTTTCTGGTTAGATAGTAGTTGATAATGCGAGACCTGATTGGCTGTTGGTTCTGTGGAGTTCTGCTGTGTTGTAGTATGGTGGAGTCGTTGAAAAATGTTATTTAGAAGCGCTTTATGCTTAGCAGGCTAAAGAAAAATTTTGGGTTAGTCCTATGTATGTCGTTATGCTGCCGAAATTTTCGGTGCACTTGGTTAGTTTTGGTTTAAGAGTTAGTAATGTAACGCCCCAGGCCCAGGATTCGGAATCTGGATTCGGCCCTTAACGGCCCCGGCATTCCCCTGCGACCTGGCCACGCCACCATACTTGTCTGATACTACTTCTAAGATTGAAGACTGTCCCCACAAACCAACACGGGGCCCTTTTAGCATGTTTTGTCCTCACTCACATGCTTCCTAGGAAATTTCCCAGGAGGTCACCCAACATAGAACTTCTCCAAGCTAAGCACGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAGCTTATCTTGATCATACTTTCATGTCCTCAGGATCCCTCTCATTCGGATGTGGCCTCGGTTCATTCATGTACCCCTCCTAACTCGGGTGTTACATGCCCACCAGCTTCCGCCTTGGTTCGTCCCCGAACCACATCCTACTGGGAGAGGTTCTGCTCTGATACCATCTGTAACGCCCCAGGCCCTGGATTCGGAATCCAGATTCGGCCCTTAACGGCCCCGGCATTCCCCTGCGACCTGGCCACGCCACCATACTTGTCTGATACTACTTCTAAGATTGAAGACTGTCCCCACAAACCAACACGGGGTCCTTTTAGCATGCTTTGTCCTCACTCACATGCTTCCTAGGAAAATTCTCAGGAGGTCACCCAACATAGAACTTCTCCAAGCTAAGCACGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAGCTTATCTTGATCATACTTTCATGTCCTCAGGATCCCTCTCATTTGGATGTGGCCTCGGTTCATTCATGTACCCCTCCTAACTCGGGTGTTACAAGTAATGTCTCTAGTCGGCACTCGGTTAGTTTTGGTTTAAGAGTTAGTAATGTCGCTAGGATAGTTTATAAAATCCTGGGGCGTTACAGATACCCGATTGGCATTCTCAAGTTATCAATCCTCTTAGTATAAGGTTTGGAATACAAGAGGGAATCTTGAGTAGGTCCACCGTACTGAGCTCTGATACAGTTTGTGATCATATCTTGGAGTTGTTGGATGGATAGTGAAGCGATCGAAGCAGAACAATGTGGCCGATCATCTTGCACTATAGTCTTTCCTTTGCCGTGATTTTTTACGACTTGGGTTTGACTTGATTCAGCGATATATTGGTTCTCAATTTGGCTCTTTAGGTGCGCGATTTGAGAATCTTTTTCTTCAATCGCCTTCATCAAGGTGTTGATGTGCTCCTGCATCTCAGCCATTCTTTCTTCCGTAGTTCTTGTCTCAGTCATCATGACAGTCACTACGTCAGAATCAAGTTCAAACAAAGGACTATACTTAACAAGAAATTTTTCATTGGTATATGCCTTCTGCAATGTTGTTTCTTGGCTTGCAACGATAGAAGTTTTATCTTCTTGCAACGTCGGTTCATTGAAGCAATAATGGGCAGTGGAACCCATGTAAGACTTGTTCATGACAGCGACCATTGAAGAAGTCTTGAACGACATTTTTACACTTGTGTTTTGAGATAAGAGAGAGAGATGAGAGGTAGAAATGGTCCCACCGGACGTGCCAATTTGTTCACACGTAACTTCAGGGATGGAGACACGTGGAATAAATATGTATTTGTATTGATGTAATATGCGTGTGGGTGTACAATCTCTAACTTTAATCCTCTGATTCTCTCTCTTATGTGTGAATGTGTTTTACTCGAGGGCTGTAGCGCTTGTTCTCGAGTCTGAAGCTTCAATTGATTCTTGGAGCTTTTAAAGTCTTGGAGTCTTGAAGAGCCTTTGGTCTTCAAGGATTGTTGAAGTCCTCTAGTCTTGAAGGGTCTTCAGTCCTCAAGAAGTCTTAGGGTCTTGAAGCCTTGGAGTCTTGAAATCTTGAAGAGTCTTTGGTCTTCAAGAATTGTTGAAGTCTTCTAGTCTTGAAGGGTCTTCAGCCTTCAAGAAGTTTTGGGGTCTTGAAGTCTTAAAGAGCCTTTGGTCTTCAAGAATTGTTGAAGTCTTATAGTCTTGAAGGGTCTTCAGTCTTCAAGAAGTCTTGAGGTCTTGAAGTCTTGAAGAGTCTTTGGTCTTCAAGGATTGTTGAAGTCTTCTAGTCTTGAAGGGTCTTCATTCTTCAAGAAGTTTTGGGGTCTTGAAGTCTTGAAGAGCCAGAAGTTTTGGGGTCTTGAAGTCTTGAAGAGCCTTTGGTCTTCAAGAATTGTTGAAGTCTTCTAGTCTTGAAGGGTCTTCGATCTTCAAGAAGTCTCAGGGTCTTGAAGTCTTGAAGAGTCTTTGGTCTTCAAGGATTGTTGAAGTCTTCTAGTCTTGAAGGGTCTTCGATCTTCAAGAAGTCTCGGGGTCTTGAAGTCTTGAAGAGTCTTTGGTCTTCAAGGATTGTTGAAGTCTCCTAGTCTTGAAGGGTCTTCAGTCTTCAAGAAGTCTTGGTGGAGTTTCTCTGAATTCTCTTACTCTGGCTGAGAGCTTCCAACTTCTTTTCTAAAATGGAAGAGAACCCCTCTATTTATAGAGTTCTCGCTGGATGGGCCCTGGTGACTTTTGGGCCAACAACTTTGGGCTTGGACTTTATTGGTTTTGGGCTCAACTATTTAGTCTTGGGTCTGGTTCATATTTGACCCAAAACCATATGACCCAAATATTTAAAAGACCCAAATTTGATCCAAATAATTATTTTTTTTAATTAATTGGTCAAATTAATTAATTTGATCAAAATAATTTAATTTTAATTAATTGATCAAATAGAAATTTGGCTCTATAAATTTATAATTGGCCAATTTTGTCTTCAAATTAAATTTGGGACGCATGTCAATTTATAATTGGTCCCAAATTTAATTAATTATAATTTCGTCATTAATTTCATGTAATGACGTGTCAATTTATGATTGGGCAAAATTTCTCTTTCAGCAGTGGTCTAAACCAGGAAGAAAATGTAGATTGAAAATTATATATTAGCTAAGAAGATGGTGAAATTTTGAGTTTAGAACATGGATTTTTTTTTTTTTTAATTGTTGGTCAAAGCCCTCCTTTGACCAAAAAGAACTCATTCTCCCTCCTCTACCCCACACTCTCTCCCTCTTTCTCTCCCCCTCTCCCACGTGACCACCATAAGTAGTATAGTTTTTTTTTCTTTTTACCCCTTCTTAATAGTATTATTTTATTATTTTAAAAAAAATAGTATTATTTTATTGTCATTTTTAATTAGTATTTATTTTAATATATTTTGTTAGTTTAAAAAAAATCTCACGATTATAGGACATTTAGTTTTATTTAGTTTTCATTATTTGAGTGGTTAAATGTGAGTCTTCTCTGTGTGAAATCCGATATGTAAAGATTATTTAAATAGCCAGAATTTTTTCCCATTACTAGAGAGTTAGAATATAAGAATTTTGTAGTATGTTTCAAGATGGGGCAAAGATTCGAGGTGGGAGGTTGAATGCTGACAAAGATCGAAAATGGGAAGAAATAGATGATAATAAATAATCATCCTAAATATTTTGCTTTTTTCTTTTCTCTATTTATGTTTTTTTTTCTCTTGAATCTCCTCATTCAATGAGATGAATCTCATAAACCTATGTGTCAATGGTTTTTTTTAGTATTATAATGATTATTGTAAAGATATAATGTATATATACTCCCTTATGATAATAGACATACATTAAATATAGCAATTAAAAAATCTGCTTATTCTAGGGTTTCTTTTATTATGACATCTGTGGATTTTCTTGGCTTTCTAATCAGGTGCATGAAGTCATGGAGTTCTGAGACGAGAAAAGCATGCATAAAAAGCCAAAGGAAGAAGAGTGATTATTGGATGAAGAAGAATATAATGTGTTTTTAATATATTTTAATTTTCTTCTTTTTAGAATTTTTTAAGAAATTGTTTAAGGTTCTCGGTGATTGTGAAATGAGAGGAGAAAAAATAAATTGAGGAGCAAATCAAAGGGAATTAGAAATAAGAAAGAAAAAACTAGGGAGAAACCATCTAGAATATGTATCTATTCAAATTTTAATGAAAAGCAATGATTTTGTTTGAGTTCAACAAATGTGAGGTAGAATAATAAATTGAACTGGAAAAAAATTATATATATAATTAAAAAATACTAAACATAATAGTGAATTAAAAAAAGAATAAGGATATATAAAATGATTTTTTTTATTATTTTAATATATTTTTATTTAGAAAATTTAAAAAATATTTTTTTTATTAAAATAATAGTGCCAGCAAATTGTTAGGGTTTAACAGAAAAATAGACGGAGGGACCAAAAGTGTAACGAAATCCAAACCTCAGGGGTAATTTTGTTGAGTTTTAAAACTCAAAGACCAAAGTGTAACGAAATCCAAAACTCAGGGTTAATTTTGTTGAGTTTTAAAACTCAGTGACCAAAGTGTAACTTAACCCAAATCTCAGGGACAAAAAACCTTAAATTTATTATCTACGAGTCTTAGGGCATAAAACCCAACAAAAAAAATATTTTAAGATTGGAGCACACTTTGAAGAAAAACAAATCATATTTCATTATTGATGGAAATATTAAACTAGTCGATAATAGATTTCTCAATATATCAACCAAGATTTTGAGTTATCTATATCAACCAATACAGAAGTTCGAAGAATCCAGTGAAATAATTTCAACAAAGAAATTTGTCTACTATTTCAATGAGTTTAAGAAAATTATCAATGCGCGGGATAAAAAGAAGACAATAGATATGTTTTTTTTTAATAAATAACATTTAAAAGATTTCTATAAATCAATTAATAAAAGGTATGCAATTTGATAATAAATGTACGAGTTTTGAATGTATGTTATATGCATTTTCATACATATGTTAAAAAAAACACACCCCACAAAGGAACTCACACGTTCAAGATCATCCTAAAAGCCACACTCTCACTTAATTAACACATGTAAAAGTCAAAAGCGAGCTTAGCTAAGCGGTAATTGGCATGTGTCCTCGACCAAGAGGTCAGAGGTTCGAATCCCCCCACCCCCAAATGTTGATGTACTCAAAAAAAAAAATAACACATGAAAAAACGAAAGATTAAATTTAAAATAGTAAAGAGTTATTGAAACAAAAACAAGACACACCCTCACGCAATTAACACGATTGTTTCAACACAAAAATAAATAAATAAAAATAAATACTACACAAGTATTTAAAAATAATTAAACATAAGACTCATTAATACTAAATAAAAACTTTGTTTCAAAAAAAAATACTAAATAAAAACTTAAAAGAAAGAAAGAAAGAAAAAAAAAAACTTTCTAGCTACTTTCTTCAATATAGATTTAGACTTTTCATTTTCAAATACATGGCCTTTTTATCTTCCTCAATTTCTTAAATACATATGTTTTTCATTTTTAAACATATGACTTTTCATTTTCTCATATTTTCACTATATATGGATAGTTCTAAGTTAGCAAATGTCTGCTATTTTTTAGGGCTAAGGAGAGTGATGCCACAGCAGTTCGGGGCATTCTGGACTGCTATGAAAGGGTGTCGGGTCAGACAGTGAATTTCGATAAGTCTATTATCTCTTTCAGTCCGAGTACAGATGTGAGGGTTAAGGCTCAGGTAGGGCAGATTCTGCAGGTTCAGGTTACGGTGTGGCACCGCCAATATCTAGGCCTTCCTTCTTTTATGCCACGCGACAGAATGAGTTCGTTGAGTTTCATTAAGGATCGAGTATGGCAGCAGATTCAGTGGTGGAAGGGCAAGCTATTCTCAGTTGGGAGTAGGGAGGTTCTTCTAAAGTCTGTTGTGCAGGCGATCCCGTGTTATTCGATGAATTGCTTCCGTTTGCCAAAGAAGTTGATTCTCGAGATCAGTAGAGCCATGGCCCGGTTTTGGTGGGGTGGGGAGAAGGTGGATCGAGGAATTCATTGGGTGAGTTGGAAATCCCTATGTAAGCCTAAGTGCTATGGTGGGATGGGTTTTAGGGATATGGAGATTTTTAACCAAGCTTTGCTGGCAAAACAGTGTTGGAGAATTGTCCATAATCCATCTTCCCTCTTGGCACGTGTTCTGAAGGGCAGATATTTTCCTTTCGGAGATTTCTTGAGGGCAGATGTGGGGTCGAGACCGTCCTTTATATGGAGGAGTTTGTTGTGGGGGAGAGAGCTTTTGGAGAGGGGCTTGCGTTGGCGAGTTGGGAATGGGGAAAGTGTGCCGGTATATGGAGTGAATTGGCTTCCTGATGATGGTAATTTTAGAGTGCGATCATCAGTGACATTAGCGCCGGAGACTCGGGTTGCAGATCTGATGACGGCATCGGGGCAGTGGAACGAAGGGCTCATCCGACAGCATTTTAGCCCTCAGGAGGTCAGTCTAATTTTGTCAATTCCTGTGCGGGCTGGGGCGGAGGATAAGATTGTTTGGCATTATGAGAAGTCGGGCCTGTTTTCGGTGAAAAGCGGATATCGGTTGGGGCAATCAGCTTAG

mRNA sequence

ATGTTGTTCAAGTGCCGACAGCGAGACCCACGCTCGAAGGCCAGCCGTTGTTTCTTCTCCTTCGTTCTGGGCAAGCTCGAAATTTTCTCTCCCTCTCGTTTTCTTCATCCACGCGCAGTAGGTGTAGGTGGCCGTAGCAGCAACTCTCGTGAAGGCCTCTTGCAAGAGCGCGACTCTGGTGGATTTCCAGCGTGGGTCGCACGAGCCATCACGGCATCTTGGGTTGAATTAGGTGTTCGGTGGATACCCATAGCTCGAAAGGTCTCAACTCAAGTTACCTATAGCCTAAGGAATTCGAACTCTGCTGGACGCTTTTTAGCAAAGACCCAAATTTCCTTTGGGAAGTTAAGGCGTTTGATCCAACGCGAACTGTTTCGTATACTTCCAAGCAAGGATCAAGTTCGTGTTGACAAAGCTAGGAGGAAATTAGTCTTGCTCCAAGTCGTCGAGCTAGCCTTCAAGCTTGCATTGAGTTTGTTTGTTAAGGAGTGTTTAGAGCTTCCGGGACCTGAACATGAAAGAAAGGCTAGTTGGGTGAATGTTAGTGCACCTCGGGTACAAATGGTCGAGGGGTGGCATATCACCAGTGGTTTAAGAGGAGCATCGAGGCCTTGGGTACAAATGATCAGGGATCGGTGTGATGAGTCTAAAAAGCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGATACAAATGGTCAAGGGTCGAACGTCGAGCTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCGGGGGACAGTGCGACTTGAAGGATCAGTCTTGGAGAGCCATATGAGGGCTAAATATGAGCGGGCTGCTTACCAGTACCTTAGTATAGTAGTTGATAATGCGAGACCTGATTGGCTGTTGGTGCGCGATTTGAGAATCTTTTTCTTCAATCGCCTTCATCAAGGTGTTGATGTGCTCCTGCATCTCAGCCATTCTTTCTTCCGTAGTTCTTGTCTCAGTCATCATGACAGTCACTACGTCAGAATCAAGTTCAAACAAAGGACTATACTTAACAAGAAATTTTTCATTGGATTGTTGAAGTCTTCTAGTCTTGAAGGGTCTTCATTCTTCAAGAAGTTTTGGGGTCTTGAAGTCTTGAAGAGCCAGAAGTTTTGGGGTCTTGAAGTCTTGAAGAGCCTTTGGGCTAAGGAGAGTGATGCCACAGCAGTTCGGGGCATTCTGGACTGCTATGAAAGGGTGTCGGGTCAGACAGTGAATTTCGATAAGTCTATTATCTCTTTCAGTCCGAGTACAGATGTGAGGGTTAAGGCTCAGGTAGGGCAGATTCTGCAGTGGAACGAAGGGCTCATCCGACAGCATTTTAGCCCTCAGGAGGTCAGTCTAATTTTGTCAATTCCTGTGCGGGCTGGGGCGGAGGATAAGATTGTTTGGCATTATGAGAAGTCGGGCCTGTTTTCGGTGAAAAGCGGATATCGGTTGGGGCAATCAGCTTAG

Coding sequence (CDS)

ATGTTGTTCAAGTGCCGACAGCGAGACCCACGCTCGAAGGCCAGCCGTTGTTTCTTCTCCTTCGTTCTGGGCAAGCTCGAAATTTTCTCTCCCTCTCGTTTTCTTCATCCACGCGCAGTAGGTGTAGGTGGCCGTAGCAGCAACTCTCGTGAAGGCCTCTTGCAAGAGCGCGACTCTGGTGGATTTCCAGCGTGGGTCGCACGAGCCATCACGGCATCTTGGGTTGAATTAGGTGTTCGGTGGATACCCATAGCTCGAAAGGTCTCAACTCAAGTTACCTATAGCCTAAGGAATTCGAACTCTGCTGGACGCTTTTTAGCAAAGACCCAAATTTCCTTTGGGAAGTTAAGGCGTTTGATCCAACGCGAACTGTTTCGTATACTTCCAAGCAAGGATCAAGTTCGTGTTGACAAAGCTAGGAGGAAATTAGTCTTGCTCCAAGTCGTCGAGCTAGCCTTCAAGCTTGCATTGAGTTTGTTTGTTAAGGAGTGTTTAGAGCTTCCGGGACCTGAACATGAAAGAAAGGCTAGTTGGGTGAATGTTAGTGCACCTCGGGTACAAATGGTCGAGGGGTGGCATATCACCAGTGGTTTAAGAGGAGCATCGAGGCCTTGGGTACAAATGATCAGGGATCGGTGTGATGAGTCTAAAAAGCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGATACAAATGGTCAAGGGTCGAACGTCGAGCTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCGGGGGACAGTGCGACTTGAAGGATCAGTCTTGGAGAGCCATATGAGGGCTAAATATGAGCGGGCTGCTTACCAGTACCTTAGTATAGTAGTTGATAATGCGAGACCTGATTGGCTGTTGGTGCGCGATTTGAGAATCTTTTTCTTCAATCGCCTTCATCAAGGTGTTGATGTGCTCCTGCATCTCAGCCATTCTTTCTTCCGTAGTTCTTGTCTCAGTCATCATGACAGTCACTACGTCAGAATCAAGTTCAAACAAAGGACTATACTTAACAAGAAATTTTTCATTGGATTGTTGAAGTCTTCTAGTCTTGAAGGGTCTTCATTCTTCAAGAAGTTTTGGGGTCTTGAAGTCTTGAAGAGCCAGAAGTTTTGGGGTCTTGAAGTCTTGAAGAGCCTTTGGGCTAAGGAGAGTGATGCCACAGCAGTTCGGGGCATTCTGGACTGCTATGAAAGGGTGTCGGGTCAGACAGTGAATTTCGATAAGTCTATTATCTCTTTCAGTCCGAGTACAGATGTGAGGGTTAAGGCTCAGGTAGGGCAGATTCTGCAGTGGAACGAAGGGCTCATCCGACAGCATTTTAGCCCTCAGGAGGTCAGTCTAATTTTGTCAATTCCTGTGCGGGCTGGGGCGGAGGATAAGATTGTTTGGCATTATGAGAAGTCGGGCCTGTTTTCGGTGAAAAGCGGATATCGGTTGGGGCAATCAGCTTAG

Protein sequence

MLFKCRQRDPRSKASRCFFSFVLGKLEIFSPSRFLHPRAVGVGGRSSNSREGLLQERDSGGFPAWVARAITASWVELGVRWIPIARKVSTQVTYSLRNSNSAGRFLAKTQISFGKLRRLIQRELFRILPSKDQVRVDKARRKLVLLQVVELAFKLALSLFVKECLELPGPEHERKASWVNVSAPRVQMVEGWHITSGLRGASRPWVQMIRDRCDESKKHRCTLGTNGQGAMHSSRPWIQMVKGRTSSSVESIVALGTNGRGTVRLEGSVLESHMRAKYERAAYQYLSIVVDNARPDWLLVRDLRIFFFNRLHQGVDVLLHLSHSFFRSSCLSHHDSHYVRIKFKQRTILNKKFFIGLLKSSSLEGSSFFKKFWGLEVLKSQKFWGLEVLKSLWAKESDATAVRGILDCYERVSGQTVNFDKSIISFSPSTDVRVKAQVGQILQWNEGLIRQHFSPQEVSLILSIPVRAGAEDKIVWHYEKSGLFSVKSGYRLGQSA

Homology

[Close]

BLAST of Spg028424 vs. NCBI nr
Match: KAE8772590.1 (hypothetical protein D1007_55406 [Hordeum vulgare])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-12
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 394 AKESDATAVRGILDCYERVSGQTVNFDKSIISFSPSTDVRVKAQVGQILQWNEGLIRQHF 453
           A E +AT ++ IL  YE VSGQ +N +KS + FS +T   VKA       W++ L+   F
Sbjct: 281 AMEDEATVLKEILQLYENVSGQCINTEKSSLLFSANTKQHVKA------MWDQQLVVDTF 340

Query: 454 SPQEVSLILSIPVRAGAEDKIVWHYEKSGLFSVKSGYRL 493
           S  E  LIL++P+R G  D I WH++  G+ SV++ Y+L
Sbjct: 341 SHDEARLILNMPLRDGVVDFIAWHFDPRGMHSVRNAYKL 373

[Close]

BLAST of Spg028424 vs. NCBI nr
Match: XP_015899247.1 (uncharacterized protein LOC107432585 [Ziziphus jujuba])

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-11
Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 335 DSHYVRIKFKQRTILNKKFFIGLLKSSSLEGSSFFKKFWGLEVLKSQK-----FWGLEVL 394
           DS +V +  +  T ++    I  L SS L  S   K   G+ +  S       F+  + +
Sbjct: 342 DSKWVSLVMRHVTGVSYSILINGL-SSLLRKSVESKLLNGISITSSSPTISHLFFADDTI 401

Query: 395 KSLWAKESDATAVRGILDCYERVSGQTVNFDKSIISFSPSTDVRVKAQVGQI--LQWNEG 454
               A + D   +  IL  YER  GQ VN  K+++SFSP+T + ++ Q G      WN  
Sbjct: 402 LFTHATKEDCCQILNILHVYERAFGQQVNLQKTVVSFSPNTVLSIQDQSGMFAYCNWNVD 461

Query: 455 LIRQHFSPQEVSLILSIPV-RAGAEDKIVWHYEKSGLFSVKSGY 491
           L+R  F   EVS I +IP+   G  D+  W Y  +G+++VKSGY
Sbjct: 462 LLRTSFFADEVSFIQTIPIGGVGTTDRFAWKYSANGVYTVKSGY 504

[Close]

BLAST of Spg028424 vs. NCBI nr
Match: XP_010496008.1 (PREDICTED: uncharacterized protein LOC104773141 [Camelina sativa])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-09
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 405 ILDCYERVSGQTVNFDKSIISFSPSTDVRVKAQVGQIL---------------QWNEGLI 464
           I+  Y R SGQ VN DKS I F       V++Q+  ++                W+   +
Sbjct: 3   IIGSYGRASGQEVNLDKSSIMFGKKVPADVRSQLKSVIGISKEGCMGSYLDTKDWHLPTL 62

Query: 465 RQHFSPQEVSLILSIPV-RAGAEDKIVWHYEKSGLFSVKSGYRLGQ 495
            + F P+++SLI S+PV +    D+++WH+ KSG +SVKSGYRL +
Sbjct: 63  EEFFDPEDISLIRSMPVCKTSQPDRLLWHFTKSGKYSVKSGYRLAR 108

[Close]

BLAST of Spg028424 vs. NCBI nr
Match: PWA65252.1 (hypothetical protein CTI12_AA315900 [Artemisia annua])

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-08
Identity = 42/120 (35.00%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 390 KSLWAKESDATAVRGILDCYERVSGQTVNFDKSIIS-----------------FSPSTDV 449
           K + AK S+   +  ++D Y + SGQ++NF KS                    FSP T V
Sbjct: 278 KKIVAKVSECDCLMRLIDQYCKASGQSINFSKSETQKWIPYPEDFYVRHPRGPFSPDTFV 337

Query: 450 RVKAQVGQILQWNEGLIRQHFSPQEVSLILSIPV-RAGAEDKIVWHYEKSGLFSVKSGYR 492
                 G    W+   +     P+EVSLI  IP+ ++GA DK+VWHY+  G ++VKSGY+
Sbjct: 338 SDFINNG---AWDISKLNDVVLPEEVSLISQIPISKSGAPDKLVWHYDAKGSYTVKSGYQ 394

[Close]

BLAST of Spg028424 vs. NCBI nr
Match: XP_024037590.1 (uncharacterized protein LOC112097210 [Citrus clementina])

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-08
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 421 KSIISFSPSTDVRVKAQVGQILQWNEGLIRQHFSPQEVSLILSIPV-RAGAEDKIVWHYE 480
           K I + S  TD  V   + +  QW E LI QHF P++   I+ IP+ +   ED+++WHY+
Sbjct: 746 KPISAPSMGTDTTVAELIDEKQQWREDLILQHFRPEDAEAIMQIPLPKRPKEDQLIWHYD 805

Query: 481 KSGLFSVKSGYRL 493
           K G +SVKSGY++
Sbjct: 806 KKGYYSVKSGYQV 818

[Close]

BLAST of Spg028424 vs. ExPASy TrEMBL
Match: A0A6P4BJG5 (uncharacterized protein LOC107432585 OS=Ziziphus jujuba OX=326968 GN=LOC107432585 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-11
Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 335 DSHYVRIKFKQRTILNKKFFIGLLKSSSLEGSSFFKKFWGLEVLKSQK-----FWGLEVL 394
           DS +V +  +  T ++    I  L SS L  S   K   G+ +  S       F+  + +
Sbjct: 342 DSKWVSLVMRHVTGVSYSILINGL-SSLLRKSVESKLLNGISITSSSPTISHLFFADDTI 401

Query: 395 KSLWAKESDATAVRGILDCYERVSGQTVNFDKSIISFSPSTDVRVKAQVGQI--LQWNEG 454
               A + D   +  IL  YER  GQ VN  K+++SFSP+T + ++ Q G      WN  
Sbjct: 402 LFTHATKEDCCQILNILHVYERAFGQQVNLQKTVVSFSPNTVLSIQDQSGMFAYCNWNVD 461

Query: 455 LIRQHFSPQEVSLILSIPV-RAGAEDKIVWHYEKSGLFSVKSGY 491
           L+R  F   EVS I +IP+   G  D+  W Y  +G+++VKSGY
Sbjct: 462 LLRTSFFADEVSFIQTIPIGGVGTTDRFAWKYSANGVYTVKSGY 504

[Close]

BLAST of Spg028424 vs. ExPASy TrEMBL
Match: A0A2U1MVH6 (zf-RVT domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA315900 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-08
Identity = 42/120 (35.00%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 390 KSLWAKESDATAVRGILDCYERVSGQTVNFDKSIIS-----------------FSPSTDV 449
           K + AK S+   +  ++D Y + SGQ++NF KS                    FSP T V
Sbjct: 278 KKIVAKVSECDCLMRLIDQYCKASGQSINFSKSETQKWIPYPEDFYVRHPRGPFSPDTFV 337

Query: 450 RVKAQVGQILQWNEGLIRQHFSPQEVSLILSIPV-RAGAEDKIVWHYEKSGLFSVKSGYR 492
                 G    W+   +     P+EVSLI  IP+ ++GA DK+VWHY+  G ++VKSGY+
Sbjct: 338 SDFINNG---AWDISKLNDVVLPEEVSLISQIPISKSGAPDKLVWHYDAKGSYTVKSGYQ 394

[Close]

BLAST of Spg028424 vs. ExPASy TrEMBL
Match: A0A2K2CJK6 (zf-RVT domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_5g26948v3 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-07
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 444 WNEGLIRQHFSPQEVSLILSIPVRAGAEDKIVWHYEKSGLFSVKSGYRL 493
           WN+ LI QHF   +V LILSIP+RA +ED I WH++  GLFSVKS Y++
Sbjct: 68  WNQALITQHFHLDDVPLILSIPLRAQSEDFIAWHFDGRGLFSVKSAYKV 116

[Close]

BLAST of Spg028424 vs. ExPASy TrEMBL
Match: A0A1R3JM85 (Reverse transcriptase OS=Corchorus olitorius OX=93759 GN=COLO4_15583 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-07
Identity = 37/119 (31.09%), Postives = 62/119 (52.10%), Query Frame = 0


Query: 394 AKESDATAVRGILDCYERVSGQTVNFDKSIISFSPSTDVR----VKAQVG---------- 453
           A E +  A+  +L  ++  +GQ +NF K  + FS +T +     +K ++G          
Sbjct: 33  ADEQNCEAIMNVLTKFKNATGQVINFTKYAVFFSHNTPIMHRRIIKEKLGADGPMIVKDL 92

Query: 454 ---QILQWNEGLIRQHFSPQEVSLILSIPVRAGAE---DKIVWHYEKSGLFSVKSGYRL 493
              + + W E ++R  F+  EV  I  IP+  G+E   D+I WH+ + G +SVKSGY+L
Sbjct: 93  IDFERICWKENVVRALFNQNEVKAIKKIPI--GSEQVPDRITWHFTRDGNYSVKSGYKL 149

[Close]

BLAST of Spg028424 vs. ExPASy TrEMBL
Match: A0A803QPV3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-07
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 386 LEVLKSLWAKESDATAVRGILDCYERVSGQTVNFDKSIISFSPSTDVRVKAQVGQILQWN 445
           L++ K+    E    A++  LD Y R SGQ +N DKS++SFSP+T   V+  +  IL   
Sbjct: 420 LDMSKAFDRVEWSCVAIKRALDIYHRASGQLLNEDKSVMSFSPNTLEHVQHSLSNILD-- 479

Query: 446 EGLIRQHFSPQEVSLILSIPVR-AGAEDKIVWHYEKSGLFSVKSGYRLGQS 496
             L+++ FS  +V  IL IP+  +   D  +W+   SG ++V+SGY    S
Sbjct: 480 --LLQRDFSCVDVPNILKIPLSFSTTTDLWIWNNTTSGEYTVQSGYHFACS 526

The following BLAST results are available for this feature:

BLAST of Spg028424 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8772590.1	4.1e-12	41.41	hypothetical protein D1007_55406 [Hordeum vulgare]	[more]
XP_015899247.1	2.7e-11	32.93	uncharacterized protein LOC107432585 [Ziziphus jujuba]	[more]
XP_010496008.1	1.1e-09	35.85	PREDICTED: uncharacterized protein LOC104773141 [Camelina sativa]	[more]
PWA65252.1	6.1e-08	35.00	hypothetical protein CTI12_AA315900 [Artemisia annua]	[more]
XP_024037590.1	8.0e-08	42.47	uncharacterized protein LOC112097210 [Citrus clementina]	[more]

BLAST of Spg028424 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028424 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P4BJG5	1.3e-11	32.93	uncharacterized protein LOC107432585 OS=Ziziphus jujuba OX=326968 GN=LOC10743258...	[more]
A0A2U1MVH6	3.0e-08	35.00	zf-RVT domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA315900 P...	[more]
A0A2K2CJK6	1.5e-07	59.18	zf-RVT domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_5g...	[more]
A0A1R3JM85	3.3e-07	31.09	Reverse transcriptase OS=Corchorus olitorius OX=93759 GN=COLO4_15583 PE=4 SV=1	[more]
A0A803QPV3	3.3e-07	36.04	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Spg028424 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46736:SF6	SUBFAMILY NOT NAMED	coord: 446..494
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 446..494
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 368..432
None	No IPR available	PANTHER	PTHR46736:SF6	SUBFAMILY NOT NAMED	coord: 368..432

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028424.1	Spg028424.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding