Spg028418 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028418
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S4
Location	scaffold7: 10739653 .. 10742258 (+)
RNA-Seq Expression	Spg028418
Synteny	Spg028418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGTGGATCGCTTTACAAACTCTTTTCTCATTTGCTTCATATCTCCATTGACGTTCTCGGTTACGGTGTTCTACATCGTTGTTTCCATCTTCATTTGGAACTTTTTTTTGTTGTGTTTGTAGAATTTTAGGCAACTGTGTCTGTATTAGGTGATTTGTGAGCCTTATGATTTGTTGGATTGTGATTTTTTAAAGGGTCTCTATTTAAGAGTGATGCTACCACAGTGAAGGGCTTGGCTAATTCGTCCATGATAACACGAACTCTTCCATTCAACTGGTTTTCCTTAGTTTTATATGTTCACATTATTTAGGGTTTTTTTTTTTGGTTTCCCTCTTTTGCTCGTTTGGGTGAGATTTGTTTTTTATATAGGAATTTTGAGCTTGCAAATACCTGTACTACACGAGTTATTTTTCCTGATATGTTTCCTAGAGTATGCGGATGGGTTTGATTTTTCTACTATCCATCATATGTTTTAATTGTGTTGTGTCAGAAGAAAATGCATGGAAGTTATTTAATGGAAAAAGCACAATTAGTTTTGTTGTCCGGCAACCACAGAAATATTCATGGCACGATATTTTCTGCAAGTATGCCAAGTTTATAACTTTGCCTTTGAAATTAATGTTTATGGCTTTGACAGGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGTGAGTGAAATTGATAGTTTCCATTTCAATTTACTTTTTCTTTCTAGCTACGCATTACACTTATATCTGACATTTAGTTCTACCTTTTAAATCACTTTGTAGGCCCCCAAACCTTCATCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATCCTTATCTTGCGAAACCGGCTGAAATATGCTCTTACATACCGTGAGGTCATTGCAATTTTGATGCAACGACATGTTTTGGTAGATGGGAAGGTGAGGACCGATAAGACGTACCCAGCTGGGTTCATGGGTATGTTGATCTCAGACTTTGTATTTATACTGTGGTTTCAGTTTCACTATTTATGGACCATTGTTTATAAGCTTCACTGTTTCACAGTTTTTATATTATAATAGCTGCCTAAATCGATATTTTTCCTTTGGGAATTGGCTGTTGGTTCTATGAACTGAATTAGGGGAATGTATGGAGTTGTAAGTTGTAACTTGCTTCAATGCTTTCTTCCCAGTTGTGTACGGTGCACTTTTTGTGGCTAATGTTGGTTTGACCCTCATTTTGTTGTATTTCTTTATTTCCAACTCCTCTCCCTATTCTTCTTAATGAAAGTCAGAGGGACGTTCAATCAATTCTTTTACCATAAAAAGTATTGTCCTTAACAAATAGGGTAGCGAGTAGGGAATGCATCTTTAACTTTATCAGCCTGCAAACGAGATAATTTAACGGTAATCTGATATATAATATGTTCCAATTCAACTCATATGGAGGTCATTCTTTTAAACATGGTACTGCTTGGAACTGCTTTGTCTCTTGGTTGCATAATTTTTGTTCTGTTTATTATTTTATTATATACATTTTAAGCACGACATTTCTTTTTGTTTCAGATATTGTGTCCATTCCCAAAACAAACGAGAATTTCCGGCTTCTTTATGACACAAAAGGACGTTTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGGTTAGCTCTACTGTTCTTTCATATTGAACATTGACCTTTTATTTGTTAGAACAATCCTGTTTATATTTCAAAACCATTCTGCATTTTTTCTATGACTTCTGAAAGTCAGCTTTTTTTCCCCTCGATGATTTTCATGTGAGATCCATGAAGGGAAATTGATTTCCTAATCCTCCGGGGTAACAAGTTCGTCTGTTGTTTATGATATATGCAATTGGATGATTCATGTTGACTCTGATATTGTTTTTGCAGTACAAGCTCTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGAATCCCATATCTGAACACTTATGATGGACGTACCATACGCTATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTCGGAAATGTTGTGATGGTGACTGGTGGAAGGAATCGTGGGCAAGTCGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATCCACATTCAGGATGCAACCGGTCACGAATTTGCGACTCGGCTAGGCAATGTGTTCACAGTTGGGAAGGGGACGAAGCCATGGATATCCCTTCCGAAGGGCAAGGGTATTAAATTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAGCCAAGCAGCAGTAACAGCTTAAGAGGTTGAGTATTGTAGTGATGATTTTAAATCTTTTTTATTTTTATTTTTTTTGACTGATCTGTTTCTGGGATTTTGCTCTTGTTATTGTGGTCGTAGATCTTGAGACATTATTTATTTCTACTAGAAATTTGGTGAGGCCGTTGCTTCTATAATTTTTGTCTTTTAAAAACACTTTGTTATAATGGAATTATCAGTCGTATTTTAGGTATTATATTTTGCACAAGCTTTTCTA

mRNA sequence

ATGGTCAGTGGATCGCTTTACAAACTCTTTTCTCATTTGCTTCATATCTCCATTGACGTTCTCGGTTACGGTGTTCTACATCGTTGGTCTCTATTTAAGAGTGATGCTACCACAGTGAAGGGCTTGGCTAATTCGTCCATGATAACACGAACTCTTCCATTCAACTGGAATTTTGAGCTTGCAAATACCTGTACTACACGAGTTATTTTTCCTGATATGTTTCCTAGAGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATCCTTATCTTGCGAAACCGGCTGAAATATGCTCTTACATACCGTGAGGTCATTGCAATTTTGATGCAACGACATGTTTTGGTAGATGGGAAGGTGAGGACCGATAAGACGTACCCAGCTGGGTTCATGGATATTGTGTCCATTCCCAAAACAAACGAGAATTTCCGGCTTCTTTATGACACAAAAGGACGTTTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGTACAAGCTCTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGAATCCCATATCTGAACACTTATGATGGACGTACCATACGCTATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTCGGAAATGTTGTGATGGTGACTGGTGGAAGGAATCGTGGGCAAGTCGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATCCACATTCAGGATGCAACCGGTCACGAATTTGCGACTCGGCTAGGCAATGTGTTCACAGTTGGGAAGGGGACGAAGCCATGGATATCCCTTCCGAAGGGCAAGGGTATTAAATTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAGCCAAGCAGCAGTAACAGCTTAA

Coding sequence (CDS)

ATGGTCAGTGGATCGCTTTACAAACTCTTTTCTCATTTGCTTCATATCTCCATTGACGTTCTCGGTTACGGTGTTCTACATCGTTGGTCTCTATTTAAGAGTGATGCTACCACAGTGAAGGGCTTGGCTAATTCGTCCATGATAACACGAACTCTTCCATTCAACTGGAATTTTGAGCTTGCAAATACCTGTACTACACGAGTTATTTTTCCTGATATGTTTCCTAGAGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTCGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATCCTTATCTTGCGAAACCGGCTGAAATATGCTCTTACATACCGTGAGGTCATTGCAATTTTGATGCAACGACATGTTTTGGTAGATGGGAAGGTGAGGACCGATAAGACGTACCCAGCTGGGTTCATGGATATTGTGTCCATTCCCAAAACAAACGAGAATTTCCGGCTTCTTTATGACACAAAAGGACGTTTCCGTCTTCACTCAGTCAGGGATGAAGAGGCTAAGTACAAGCTCTGCAAAGTTCGCTCAGTGCAGTTCGGGCAAAAGGGAATCCCATATCTGAACACTTATGATGGACGTACCATACGCTATCCCGACCCCCTGATCAAGGCAAACGACACCATCAAGCTGGACCTCGACTCGAACAAGATTGCTGATTTCATCAAGTTTGATGTCGGAAATGTTGTGATGGTGACTGGTGGAAGGAATCGTGGGCAAGTCGGAGTAATTAAAAACAGGGAGAAGCACAAGGGAAGCTTTGAGACAATCCACATTCAGGATGCAACCGGTCACGAATTTGCGACTCGGCTAGGCAATGTGTTCACAGTTGGGAAGGGGACGAAGCCATGGATATCCCTTCCGAAGGGCAAGGGTATTAAATTATCCATCATTGAAGAGGCCAGGAAGAGGCTTGCCAGCCAAGCAGCAGTAACAGCTTAA

Protein sequence

MVSGSLYKLFSHLLHISIDVLGYGVLHRWSLFKSDATTVKGLANSSMITRTLPFNWNFELANTCTTRVIFPDMFPRARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKGKGIKLSIIEEARKRLASQAAVTA

Homology

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BLAST of Spg028418 vs. NCBI nr
Match: XP_022132117.1 (40S ribosomal protein S4-3 [Momordica charantia])

HSP 1 Score: 530.0 bits (1364), Expect = 1.5e-146
Identity = 259/263 (98.48%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHVLVDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KGIKLSIIEEARKRLASQAAVTA
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Spg028418 vs. NCBI nr
Match: XP_038899765.1 (40S ribosomal protein S4-3-like [Benincasa hispida])

HSP 1 Score: 528.5 bits (1360), Expect = 4.3e-146
Identity = 258/263 (98.10%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHVLVDGKVRTDKT+PAGFMD+VSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KGIKLSIIEEARKRLASQAAVTA
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Spg028418 vs. NCBI nr
Match: XP_022146851.1 (40S ribosomal protein S4-3-like [Momordica charantia])

HSP 1 Score: 527.3 bits (1357), Expect = 9.6e-146
Identity = 257/263 (97.72%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHVLVD KVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY
Sbjct: 62  IAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KG+KLSIIEEARKRLASQAAVTA
Sbjct: 242 KGVKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Spg028418 vs. NCBI nr
Match: TYK04363.1 (40S ribosomal protein S4-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 526.9 bits (1356), Expect = 1.3e-145
Identity = 257/265 (96.98%), Postives = 264/265 (99.62%), Query Frame = 0


Query: 75  PRARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYR 134
           P ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYR
Sbjct: 10  PSARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYR 69

Query: 135 EVIAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEA 194
           EVIAILMQRHVLVDGKVRTDKT+PAGFMDI+SIPKTNENFRLLYDTKGRFRLHSVRDEEA
Sbjct: 70  EVIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEA 129

Query: 195 KYKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGN 254
           KYKLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGN
Sbjct: 130 KYKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGN 189

Query: 255 VVMVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLP 314
           VVMVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLP
Sbjct: 190 VVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLP 249

Query: 315 KGKGIKLSIIEEARKRLASQAAVTA 340
           KGKGIKLSIIEEARKRLASQAAVTA
Sbjct: 250 KGKGIKLSIIEEARKRLASQAAVTA 274

[Close]

BLAST of Spg028418 vs. NCBI nr
Match: XP_038900121.1 (40S ribosomal protein S4-3 [Benincasa hispida])

HSP 1 Score: 526.9 bits (1356), Expect = 1.3e-145
Identity = 257/263 (97.72%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHVLVDGKVRTDKT+PAGFMD+VSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KGIKLSIIEEARKRLASQAAVTA
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Spg028418 vs. ExPASy Swiss-Prot
Match: Q8VYK6 (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2)

HSP 1 Score: 503.8 bits (1296), Expect = 1.5e-141
Identity = 238/260 (91.54%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           I+ILMQRH+ VDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS++DEEAK+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAA 337
           KGIKL+IIEEARKRLASQ A
Sbjct: 242 KGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Spg028418 vs. ExPASy Swiss-Prot
Match: P49204 (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4)

HSP 1 Score: 503.4 bits (1295), Expect = 1.9e-141
Identity = 238/260 (91.54%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           I+ILMQRH+ VDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS++DEEAK+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAA 337
           KGIKL+IIEEARKRLASQ A
Sbjct: 242 KGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Spg028418 vs. ExPASy Swiss-Prot
Match: P46300 (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 3.3e-141
Identity = 239/263 (90.87%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           I+ILMQR V+VDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS+RDEE+K+
Sbjct: 62  ISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KGIKL+IIE+ARKRLA+Q+A  A
Sbjct: 242 KGIKLTIIEDARKRLAAQSATPA 264

[Close]

BLAST of Spg028418 vs. ExPASy Swiss-Prot
Match: Q93VH9 (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 9.6e-141
Identity = 236/260 (90.77%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           I+ILMQRH+ VDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS++DEEAK+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAA 337
           KGIKL+IIEEARKRL++Q A
Sbjct: 242 KGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Spg028418 vs. ExPASy Swiss-Prot
Match: P46299 (40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 4.1e-139
Identity = 238/260 (91.54%), Postives = 252/260 (96.92%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHV+VDGKVRTDKTYPAGFMD+VSIPKTNE+FRLLYDTKGRF LH++  +E K+
Sbjct: 62  IAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIH+QDA GHEFATRLGNVFT+GKGTKPW+SLPK 
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKR 241

Query: 317 KGIKLSIIEEARKRLASQAA 337
           KGIKLSIIEEARKRLA+Q A
Sbjct: 242 KGIKLSIIEEARKRLAAQNA 261

[Close]

BLAST of Spg028418 vs. ExPASy TrEMBL
Match: A0A6J1BSY6 (40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111005064 PE=3 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 7.2e-147
Identity = 259/263 (98.48%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHVLVDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KGIKLSIIEEARKRLASQAAVTA
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Spg028418 vs. ExPASy TrEMBL
Match: A0A6J1D0L7 (40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111015952 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 4.6e-146
Identity = 257/263 (97.72%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHVLVD KVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY
Sbjct: 62  IAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KG+KLSIIEEARKRLASQAAVTA
Sbjct: 242 KGVKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Spg028418 vs. ExPASy TrEMBL
Match: A0A5D3BXA6 (40S ribosomal protein S4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00330 PE=3 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 6.1e-146
Identity = 257/265 (96.98%), Postives = 264/265 (99.62%), Query Frame = 0


Query: 75  PRARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYR 134
           P ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYR
Sbjct: 10  PSARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYR 69

Query: 135 EVIAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEA 194
           EVIAILMQRHVLVDGKVRTDKT+PAGFMDI+SIPKTNENFRLLYDTKGRFRLHSVRDEEA
Sbjct: 70  EVIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEA 129

Query: 195 KYKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGN 254
           KYKLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGN
Sbjct: 130 KYKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGN 189

Query: 255 VVMVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLP 314
           VVMVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLP
Sbjct: 190 VVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLP 249

Query: 315 KGKGIKLSIIEEARKRLASQAAVTA 340
           KGKGIKLSIIEEARKRLASQAAVTA
Sbjct: 250 KGKGIKLSIIEEARKRLASQAAVTA 274

[Close]

BLAST of Spg028418 vs. ExPASy TrEMBL
Match: A0A0A0K4K7 (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.8e-145
Identity = 257/263 (97.72%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHVLVDGKVRTDKT+PAGFMD+VSIPKT+ENFRLLYDTKGRFRLHSVRDEEAKY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KGIKLSIIEEARKRLASQAAVTA
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Spg028418 vs. ExPASy TrEMBL
Match: A0A5A7V1R9 (40S ribosomal protein S4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00160 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.3e-145
Identity = 256/263 (97.34%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 16  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 75

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           IAILMQRHVLVDGKVRTDKT+PAGFMD+VSIPKT+ENFRLLYDTKGRFRLHSVRDEEAKY
Sbjct: 76  IAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKY 135

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVV
Sbjct: 136 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVV 195

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPW+SLPKG
Sbjct: 196 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 255

Query: 317 KGIKLSIIEEARKRLASQAAVTA 340
           KGIKLSIIEEARKRLASQAAVTA
Sbjct: 256 KGIKLSIIEEARKRLASQAAVTA 278

[Close]

BLAST of Spg028418 vs. TAIR 10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 503.8 bits (1296), Expect = 1.1e-142
Identity = 238/260 (91.54%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           I+ILMQRH+ VDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS++DEEAK+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAA 337
           KGIKL+IIEEARKRLASQ A
Sbjct: 242 KGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Spg028418 vs. TAIR 10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 503.4 bits (1295), Expect = 1.4e-142
Identity = 238/260 (91.54%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           I+ILMQRH+ VDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS++DEEAK+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAA 337
           KGIKL+IIEEARKRLASQ A
Sbjct: 242 KGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Spg028418 vs. TAIR 10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 501.1 bits (1289), Expect = 6.9e-142
Identity = 236/260 (90.77%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           I+ILMQRH+ VDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS++DEEAK+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181

Query: 257 MVTGGRNRGQVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKG 316
           MVTGGRNRG+VGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPW+SLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 317 KGIKLSIIEEARKRLASQAA 337
           KGIKL+IIEEARKRL++Q A
Sbjct: 242 KGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Spg028418 vs. TAIR 10
Match: AT5G07090.2 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 466.1 bits (1198), Expect = 2.4e-131
Identity = 221/243 (90.95%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 94  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 153
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct: 1   MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 60

Query: 154 DKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPY 213
           DKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS++DEEAK+KLCKVRS+QFGQKGIPY
Sbjct: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 120

Query: 214 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGQVGVIKNR 273
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRG+VGVIKNR
Sbjct: 121 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 180

Query: 274 EKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWISLPKGKGIKLSIIEEARKRLAS 333
           EKHKGSFETIHIQD+TGHEFATRLGNV+T+GKGTKPW+SLPKGKGIKL+IIEEARKRLAS
Sbjct: 181 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 240

Query: 334 QAA 337
           Q A
Sbjct: 241 QQA 243

[Close]

BLAST of Spg028418 vs. TAIR 10
Match: AT2G17360.2 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 349.4 bits (895), Expect = 3.3e-96
Identity = 163/180 (90.56%), Postives = 174/180 (96.67%), Query Frame = 0


Query: 77  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 136
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 137 IAILMQRHVLVDGKVRTDKTYPAGFMDIVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 196
           I+ILMQRH+ VDGKVRTDKTYPAGFMD+VSIPKTNENFRLLYDTKGRFRLHS++DEEAK+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 197 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 256
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVG  V
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGKCV 181

The following BLAST results are available for this feature:

BLAST of Spg028418 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132117.1	1.5e-146	98.48	40S ribosomal protein S4-3 [Momordica charantia]	[more]
XP_038899765.1	4.3e-146	98.10	40S ribosomal protein S4-3-like [Benincasa hispida]	[more]
XP_022146851.1	9.6e-146	97.72	40S ribosomal protein S4-3-like [Momordica charantia]	[more]
TYK04363.1	1.3e-145	96.98	40S ribosomal protein S4-3-like [Cucumis melo var. makuwa]	[more]
XP_038900121.1	1.3e-145	97.72	40S ribosomal protein S4-3 [Benincasa hispida]	[more]

BLAST of Spg028418 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYK6	1.5e-141	91.54	40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2	[more]
P49204	1.9e-141	91.54	40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4	[more]
P46300	3.3e-141	90.87	40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1	[more]
Q93VH9	9.6e-141	90.77	40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1	[more]
P46299	4.1e-139	91.54	40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1	[more]

BLAST of Spg028418 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSY6	7.2e-147	98.48	40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111005064 PE=3 SV=...	[more]
A0A6J1D0L7	4.6e-146	97.72	40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111015952 PE=3 SV=...	[more]
A0A5D3BXA6	6.1e-146	96.98	40S ribosomal protein S4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0K4K7	1.8e-145	97.72	40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1	[more]
A0A5A7V1R9	2.3e-145	97.34	40S ribosomal protein S4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Spg028418 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58420.1	1.1e-142	91.54	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	1.4e-142	91.54	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	6.9e-142	90.77	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.2	2.4e-131	90.95	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.2	3.3e-96	90.56	Ribosomal protein S4 (RPS4A) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 117..181 e-value: 3.7E-5 score: 33.2
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 122..165 e-value: 9.1E-7 score: 28.5
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 126..187 e-value: 2.49506E-6 score: 42.6218
IPR005824	KOW	SMART	SM00739	kow_9	coord: 249..276 e-value: 6.9E-4 score: 28.9
IPR005824	KOW	PFAM	PF00467	KOW	coord: 252..285 e-value: 2.0E-6 score: 27.5
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 250..320 e-value: 3.4E-38 score: 131.4
IPR032277	40S ribosomal protein S4, C-terminal domain	PFAM	PF16121	40S_S4_C	coord: 287..333 e-value: 3.3E-25 score: 87.5
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 76..192 e-value: 4.6E-60 score: 202.7
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 170..244 e-value: 2.2E-35 score: 120.3
IPR038237	Ribosomal protein S4e, central domain superfamily	GENE3D	2.40.50.740		coord: 197..247 e-value: 1.6E-30 score: 106.6
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 78..114 e-value: 5.9E-19 score: 67.9
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 296..339 coord: 75..295
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 82..313 score: 36.322437
None	No IPR available	PANTHER	PTHR11581:SF33	40S RIBOSOMAL PROTEIN S4	coord: 296..339 coord: 75..295
None	No IPR available	PROSITE	PS50889	S4	coord: 117..179 score: 9.160079
IPR018199	Ribosomal protein S4e, N-terminal, conserved site	PROSITE	PS00528	RIBOSOMAL_S4E	coord: 83..97
IPR041982	Ribosomal protein S4, KOW domain	CDD	cd06087	KOW_RPS4	coord: 250..304 e-value: 5.30299E-29 score: 104.135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028418.1	Spg028418.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding