Spg028351 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg028351
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold8: 25384499 .. 25387112 (-)
RNA-Seq Expression	Spg028351
Synteny	Spg028351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCAAGGAGACTCCCACCACCGCCTAACTTATTCTCAGCCCATTTTCCCATCATTTCTCATCATTTTCCACCCAAACTTTCAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCTATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTTCACAGAAGGGAATAAGAGGTGAGATTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAGATTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTTTAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTATGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTATGGTTGGAAACCTTATTCAATTTCGTACAACTTTCATGAAGATTTCGTGAGCCAAAAATGACTTTAAGTAGGGTTAATGTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTTTGGGCAAATCAGTTGGGAATCTCATTTTCATTTCTTGAGGTAAGTTGTAGAGTGTTCGGAAAGGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGGTTCTTAATTCAAGTGTCTAGAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATGTTTAGATGTTTACATGTTTTTCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATAAGTTTTGAGCTCAGATTTTCTAACAAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAGAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCATGAGCAAGCTGAGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAAATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACATGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTGAGTGCTGGGCGGGCCCCACTACAACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAGACGTTGGTTGTACTGGGCGTGCCCTACAGAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCATTTTTCATTACACGTTTATGTCAAACGCTTTGGTTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTCCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTTGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGTGACATCTATATCAGGTTATTATTCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGGAAGTTTATTTTCAGGGATTCCACTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATCTACTCTGTTATTTCTTTTGCTTCAACATTATTTCAAAACCCAATCAATTTAACAACCTTGAAATCACTAAAAAGTTACACAAGATAGGTAGAGTGAAGGCTATTCAAAACCTCGTGGATACGATAAATTACTTATCACTTGTTGCAGACTATGTGCACTTGCATAGTATTCTAGAGCTTAATTCTATCATATTTTTAACCCACTCTAGAAGGCAACAAGTTTTTGGCGCCGTTGCCGGGGACTTGAATAAGTTTTTTTCTAATCTGTTTTGTGTATGTGTTTTAGTGGTTTGGTGCGTGAACTTTTTTATTGTTTCTTTTTGTTTTGTAGGTGTGAGATTGGTGCATGAGCGATCCTCCAGAGGTGAGATTCGAGCTTGATCCAGAAATAGAAAGAACATTCAGAAGCAGAAGGAGAGAGCAGCGAAGAAATCTAAATCCAATGGAAGACCCTCCGCGTCTTTCAGAAATTCCAGAAGATCAAGTTAATCCTCAGTAG

mRNA sequence

ATGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATTGGTGCATGAGCGATCCTCCAGAGGTGAGATTCGAGCTTGATCCAGAAATAGAAAGAACATTCAGAAGCAGAAGGAGAGAGCAGCGAAGAAATCTAAATCCAATGGAAGACCCTCCGCGTCTTTCAGAAATTCCAGAAGATCAAGTTAATCCTCAGTAG

Coding sequence (CDS)

ATGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATTGGTGCATGAGCGATCCTCCAGAGGTGAGATTCGAGCTTGATCCAGAAATAGAAAGAACATTCAGAAGCAGAAGGAGAGAGCAGCGAAGAAATCTAAATCCAATGGAAGACCCTCCGCGTCTTTCAGAAATTCCAGAAGATCAAGTTAATCCTCAGTAG

Protein sequence

MGCTSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDWCMSDPPEVRFELDPEIERTFRSRRREQRRNLNPMEDPPRLSEIPEDQVNPQ

Homology

[Close]

BLAST of Spg028351 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-22
Identity = 67/130 (51.54%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 10  SIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFN 69
           SI PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + + 
Sbjct: 76  SILPRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYK 135

Query: 70  VQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGDWCMSDPPEVRFELDPEIE 129
                       EG    +  DD+ WLHA+F AK AG PGG      PP           
Sbjct: 136 PSDVRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVM---PP----------- 191

[Close]

BLAST of Spg028351 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 6.7e-22
Identity = 71/158 (44.94%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 13  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELY 72
           PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY
Sbjct: 63  PRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLELY 122

Query: 73  IESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDWCM 132
            ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGG    
Sbjct: 123 FESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 182

Query: 133 SDPPEVRFELDPEIERTFRSRRREQRRNLNPMEDPPRL 143
            +    R +++   ER  RS     R       DP ++
Sbjct: 183 WESSTQRGQIEAGSERFARSAHEIGRPERVGPSDPKKM 220

[Close]

BLAST of Spg028351 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 61/116 (52.59%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 12  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWV 71
           WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+
Sbjct: 302 WPRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWL 361

Query: 72  ELYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGG 101
           ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGG
Sbjct: 362 ELYFESVHVEMLFYKPSDARAASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGG 417

[Close]

BLAST of Spg028351 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 70/143 (48.95%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 13  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELY 72
           PRGNR SLQT ELDKT               V IELPVPD LPTSAESS ++SSTW+ELY
Sbjct: 78  PRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESSGSNSSTWLELY 137

Query: 73  IESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG---D 125
            ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGG    
Sbjct: 138 FESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 197

[Close]

BLAST of Spg028351 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 61/116 (52.59%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 12  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWV 71
           WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+
Sbjct: 302 WPRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWL 361

Query: 72  ELYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGG 101
           ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGG
Sbjct: 362 ELYFESVHVEMLFYKPSDARAASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGG 417

[Close]

BLAST of Spg028351 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 67/130 (51.54%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 10  SIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFN 69
           SI PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + + 
Sbjct: 76  SILPRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYK 135

Query: 70  VQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGDWCMSDPPEVRFELDPEIE 129
                       EG    +  DD+ WLHA+F AK AG PGG      PP           
Sbjct: 136 PSDVRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVM---PP----------- 191

[Close]

BLAST of Spg028351 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.2e-22
Identity = 71/158 (44.94%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 13  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELY 72
           PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY
Sbjct: 63  PRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLELY 122

Query: 73  IESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDWCM 132
            ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGG    
Sbjct: 123 FESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 182

Query: 133 SDPPEVRFELDPEIERTFRSRRREQRRNLNPMEDPPRL 143
            +    R +++   ER  RS     R       DP ++
Sbjct: 183 WESSTQRGQIEAGSERFARSAHEIGRPERVGPSDPKKM 220

[Close]

BLAST of Spg028351 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.2e-22
Identity = 70/143 (48.95%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 13  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELY 72
           PRGNR SLQT ELDKT               V IELPVPD LPTSAESS ++SSTW+ELY
Sbjct: 78  PRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESSGSNSSTWLELY 137

Query: 73  IESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG---D 125
            ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGG    
Sbjct: 138 FESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 197

[Close]

BLAST of Spg028351 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.2e-22
Identity = 61/116 (52.59%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 12  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWV 71
           WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+
Sbjct: 302 WPRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWL 361

Query: 72  ELYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGG 101
           ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGG
Sbjct: 362 ELYFESVHVEMLFYKPSDARAASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGG 417

[Close]

BLAST of Spg028351 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.2e-22
Identity = 61/116 (52.59%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 12  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWV 71
           WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+
Sbjct: 302 WPRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWL 361

Query: 72  ELYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGG 101
           ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGG
Sbjct: 362 ELYFESVHVEMLFYKPSDARAASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGG 417

The following BLAST results are available for this feature:

BLAST of Spg028351 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052218.1	3.9e-22	51.54	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
TYK11835.1	6.7e-22	44.94	uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]	[more]
TYK25935.1	1.5e-21	52.59	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0058280.1	1.5e-21	48.95	uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]	[more]
KAA0040194.1	1.5e-21	52.59	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg028351 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAH6	1.9e-22	51.54	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3CJX3	3.2e-22	44.94	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UT17	7.2e-22	48.95	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7T9P7	7.2e-22	52.59	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000...	[more]
A0A5D3DR18	7.2e-22	52.59	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032...	[more]

BLAST of Spg028351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg028351.1	Spg028351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity