Spg028207 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028207
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold2: 42475967 .. 42483738 (+)
RNA-Seq ExpressionSpg028207
SyntenySpg028207
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCCGATGATCTAGATGAGCATGAACTAGTGGCCATATTCACAGCCTTCACCACAGCGCAAGCTCAGATTTTCCTACTCTTAGATCTATATATGAACGATTATAGAAGAATAGAACACCAATCACCCTACCTCCGACACCACATTAGGCATCTAACATTCTTCAGACTTATACACGAGTCTGACTTACGTTGTCGAGAGAGTACAAGGATGGACAGAAGATGTTTTGCCATACTTTGCACCTTGTTAAGAACAGTTGCCGGCTTAACTGGAACAGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTACACATCCTAGCCCACGACGTTAAGAACCGAGTAGTTCGTACACAGTTTGCTAGGTCTGGGGAGACAGTTTCTAGGCACTTCAACACCGTCCTTCATGGGGTGTTACGACTGCATGAAGTTCTTATAAAAAAACCTGAGCCAGTCACGACCTCTTGTACGGATCCGAGGTGGAAATGGTTTCAGGTATAGATCATTATTCATCCAACTTTATCTAAGTTCGGCCTCACTTTTAGTGTTAGAAACGTGAACCACTATTGCCTATACTATGTCGACGCAGAATTGCCTTCGGTTCTTTTTGTTTCATTTGAAGTTAAACATATCATTCAACCCGTCTACCCAATACTTTCTTTTTGTAACAATTGAATCCATGTTCATTTTTTATTCATATTTGCAAACTAAAATATTGAACATACGAAGTTGTTTGAGTGAATAAAAAAAATGGTCAAGAAAAAAAAATCAACTTGAATATTTGATTCAGATTCTCATGTGAAACATATCAGTAATCCAAACACAGGATATTTTAACTCATACTAAAATAATCTGCATACCAAACACAGATTATTTTATCCCATACTAAAATAATCTGCATCCCAAACACAGATTATTTTATCCCAGACTATGATAATCTGCACCCCAAACAAAGATTATTTTATCCCAGACTATAATAATCTGCACCCCAAACACAGATTATTATAACCCCCAGACTATTATAATTCCCAGATTATTATAACCACCAGATATAATAACCAATTCAACGCCCCAAACAGCCCCTTAATATATTCTCAATCTCATTTTTAAATTCAAATCATTTCCTTTTTTATAAAATTAAATCTTCAGCATCCATTTTGAAATTAATCCAATGGCCAAAATTCAATTCTTCCATCTATAAATTGAGTCATTTTCTTCTCCTCCAATACACACTCAAGGACATCAAAGTCTTAAACTCTCAAGTCTCCTTACTATCCATTCTTGTCAAAATTCCTCCCTTGCTCCTAAATTGGCCTATTGTTATTTTGTGAGGTTTTATTATTGTGAGTGCTCAACCTTGTGTAATTAGCCTTCAAGAGGTATTTTATTTTGTGAGCTTCTTTTCTTCTTTTATCATTGGGAACTTGTAATAAGGTGTGGGTGCACCTTGGGAATTGAGTGAGTGGTTTGATCTTGAACCCGAAAAAGGATTTGTAGTGGTTTGATCCTGAACCCGGTTAAAAAGGATCCTAGTGGTTTGATCTTGAACCCGTTTAAAAAGATCGGTATAGGTTGGGTCCTGAACCTGTAAAAGGATCGGTAAAGGTTTACTCTTGAACCTGAAAAAGAGTCGGTTTGGTTCTCACCCATAAGAGAGCTGTTGTAGTAAAATACCCAAGAAGGAGTCTTGGGGAGTGGAGTAGGAATTTCCGAACCACTATAAAATTTCCTGGTGTTATCTCTTTCTCTCTACTCTTTTAATTTCCACTATTTCATTTTTATGAGTAGATTGCATGCCTAGGAAAATTGTCAAATATTTCTAGCATACTTTATGCTTTATAGTGCTTATTAAATTTATTTAGTTTAAATCAATTCCTTTTAATTTAGCAAAAAGTTTTAAATTTTATTAAGCAACTCTATTCACCCCCCCCCCCCTCTAGTGTTGCCATAAGATCCTACAATTGGTATCAGAGCGGGTTGCTCTTGTTTTTAATTAAAAATATTTTTCAAAAACTCATTTGTATTAACATTCATTGTTTGAGTTCTTTATTCCAATAATTGGTATTTGAAAGTAATTTCTCTTTTTGAAAAATTATTTGAAAAGCTTAATTGCTAAGAGCTATGGCAACTATAAATTTTCTTGAAGGTCAATGTATTGATAAGCCTCCATTCTTTAATGGTGAAAATTATTATATTTGGAGAAAAAGAATGAAAACCTTTTTGCTTGCTATTGATTTTAATATTTTGTATGCTTGTGAGCATGATTTATCTAAATTGAAATTGAATGAGAAATTTTTCTCTTTTAATGCCCAAGCCATGAATATTATATGTTGTGCTTTGGATAGTAAAATATGTGATAAAATTTCACATTTTAATTATGCATATGATGTTTGGAATTTTCTTGATAATATGTATAATGTTGAAAATTCTCTGTGTACTACTAATGATTTCTTTGATGTGAAGGAGAATTATAATTCTCAAAATCAAGAAAAGTTTCACAGAGTAGAAAAAGAAAAATGTTATGGATCCTCCTTATGCTTGATGGCTCATTCGGATAATGATTATGGTGATGATAGTGATGAAAATGAGGTAAATCACAAATCTCGTACTTATGATGAACTTTATGATGCTTTTGAAAGTATGCATCAAGATTTAGAAAAACTTGGTTCAAAATATGTGAAATTATCAAAGAAGTATAAGACATTGTCTATTGAGAATAAATCTTTGATAAATGAAAATGCATGTTTGAAAAATGGAGCTAATAATGTTTTGTTGCATAATGAGGTTGATAGTGATTGTGATGAGAAAAATGTTAAGGTTAATAGAATTAAATTTCTTGAGAAAGAGAATGAGGATCTCAAATCTTTATCTTGTGAATTGAAACTTGAATTGAATGATTTGAGAAACAATAATGAAAAAATTGAATCTTTTTCATTAGAATTGAAAGATGAAATTGCTAGTTTGAAAAATAAAATTATTGATTTGGAAACTAGCAATACTTCTTTAGAGAATGATAAACTTGCCTTGATTGACAAGATTAAATTCATTGAATGTGATAGTCATGAGAAAAATGATCTTTTGCATGTGCTTAAAGAAAAAGAATTGTTAGCTAATAAAGAGCTTGAAATTGCAAAAGAGTCTATTAAGAAATTGACTATAGGTGCACAAAAATTAGATAAAATTATTGACATGGGTAAACCTTTTAATGACAAAAGGGGATTAGGCTATGTGGATGAAAATTCTTCATCTAATTCTAAGACTATTTTTGTTAAAGCTACTCCTAGTATGCCTAAAAATATTTTACCCAATGTGTCCAATTTTGTTGAATCTAAATTTGTGCCAAGGGATGAGAAATCTAGACCTATGCATGAAAAATCAAAATTTGTTCCTAAACATGTTGATGAAAAATTCAAATGTTTGCATATTGCTAAATTTGGGCCTAGACATAAAAAGGCTAAAAATGTGGATGTAAAATCAAAATTTGTGCCTAGATGTCATTTTTGTGGAGTTAAAGGTCATATTAGACCTAATTGTTTTAAATTGAAAAATGGTCTTAAAAAGAATTTCTTGAATATAAAAATCAATTTATTAAAAAGAAATTCTTACCTAATGTTACTTGTTATTCATGTGGCAAAATTGGTCATAAATTTAATAGTTGTTATTTGTCAAAAATGAATGCTAGTAATGTTGGAACTAAAAAGAAATGTATTACGACTCCCACATTTTCAATTCGTATGAATGGGGAATCTTTTGGCTTTATTAAACCTTATAGAGGAATCCGACAAGGTGATCCTTTATCACCGTACTTATTCTTAATTTGTACGGAAGGACTTTCTGCAATGCTGGTGTCTGCTAGAAACAGGGCTATGGTCGACATAATAGTGGCTCGTGCTTGCCCTAAAATCTCCCATCTGTTTTTCGCTGATGACAGTCTAGTTTTTTTAAAAGCAGCAGCTAAAGAATTTGGTTGCTTAAAACCATTTTACAGGCATATGAAGTGGCATCAGGTCAGCGTGTTAATTTTAATAAATCAACCGTGTGTTTTTAAAACAATGTTTCTAGAGATTCTAAGCAATATCTCTGTTATGTCCTGGATATGAAAGAGTAGGATTCGGTGGGAGAGTATCTTGGTTTGCTGTCGACCTTCCATCGCGGTAAGTCTCGAGATTTCCAATTCCTTCTCGATAAAGTTTGGTCTTTGTTGCAAGGTTGGAAACAAAAGTTATTTTCTCAAGGGGGAAAGGAGGTGTTAATTAAGAGCATTATTCAAGCCATTCCGACATATGCGATGGGGTGTTTCAGAATTCCGAAAGGAATCTTATCAAAGATTTCGGCTTTATGTGCTAGATTCTGGTAGGGATCTAATGAGGAAAAGCGGAAGATGCATTGGAGGAGGTGTGAAGATCTTTGTAAACCTAAGGAGAATGGGGGTTTAAACTTTAGGGACTTGGTCAATTTTAATCAGGCTATGCTGGCTAAGCAAGTGTGGCGAGTTTTGACCAATCCTAGTTTAACAATATCCAGGTTCTTATGTGGGAAATATTTCCCAAGATCATCGGTTTTGGATGCGATGGATCGTTATAATTCATCTTTCTTTTGGAAGGGCTTCTTGTGGGGTATGGAGTTATTGAAGAATGGGTTGAGGAAAAATTTGGGTAATGTTCAGTCGATCCGCTTGTTCAAAGACCCATGGCTTCCACGGCCGTCTACTCTTAAAGTGATTTCCCCTCCTATTCCTGAAATAGAGAGCGCCGTTGTGGCAGAGTTCGTAACGCCTTCGCTTCAATGGGATTTAGTGAAGCTGAATCAATTTTTGGTGTCGGAGGATGTTGACATTATCAGAAGCCTTCCGATAAGCCAATCGGCACCTGATCGATGGATCTGGCATTTTGATGGTCGAGGAGAATATTCGGTAAAGAGCGGGTACAAGCTCAGTATAACGATAAGCCAGGAGGCCTCCTTGTCTGAGCAAGGTCAAGTATCACGGTGGTGGAAAAAATTGTGGAAAATGAATGTGCCAAATAAGGTAAAAGTTTTTGTTTTGAAATCCTTTCTTAATTCTATTCCTACAAAGGTGAACTTACAGGCTCATCATGTTCCGGTGGATGGATTTTGTCCTGTGTGTAAGGAGTTTGAGACTACCGATCACACTCTTTTTCAATGTATTAGGGCTAAAGATGTCTGGGATATTATTTTTCCGTTTATGGATAATGTTACTAGGGAACCTATGGATGTAAAAGACTGTTGGCTAGCACTAATGGATTGCAGGGACTGTGATCTAGAGTGTATTTGTGTAGGAGCTTGGGCTATCTAGAATGATCGGAATAGCTTGCTTTATGATAGGCCTGTTCCGGAGGCTATTATTCGGTGTGAATGGATAGCCAAATATTTAGATGATTACAGGCAAGCGAATCCGAGAGGCATAGCTTTGCATCAATCGGTGGATGATGTGTCTGCTATTATTTCAGGTGCTGAGGATATAATCTTACACTCGGATGCGGCCTTTATGGGAGCAGGGGAACAATGTGGGATAGGTCTGGTCATGCGAGACAGGCATGGAAATATTAGGGCTGCTCAGTCTTTGAGATCGGTGGCGTGTTCATCACCGTTGGGGGCTGAAGCGGTTGAGGTATTACAAGGTCTTCTTTTGGCTTCGGACTTGAAGCTGGCTCGCTTGACGATTTTATCTGACTCTTTGAATGTTATAAGGTCTCTGAATGGGGAAATCCAATGCCAGACTAGTATTGCTACGATCATCTGGGAGGTCCAAGAAGCCTGCAAACTTTTTGAATCGGATCAATTTAGATTTGTTAGTCGAAGGTTTAATTCTTTTGCTCATAATCTTGCCCGTGTGGGCAAATCATGTTCGACGCCAGCCTTGTGGCTTCAGAACTATCCTCAATGGATGGTTAGTTTATTGCTCCAAGAGCGGTTTATGTTTGTATCCCATCGGGAATCGTTTGGTTTTTAATGAAAGGGGTCTTTCTCAAAAAAAAAAAAATGTTGGAACTAAAAAGAAATGGGTTCCAAAAATTGAGACTAACCTATATGGACCCAAACAAGTATGGGTACCAAAGACTATTCGTTAAATTATTTTGTAGGTGTGCTCCAAGAATTAATTTTTGAAGATTGGATGAGCTCCATAAGGAAATTATTCAAATTTCAAATGCAACCTTATGGCTCTCTTGGTGCTTCAAAAGGATAAATCCTTCTTTGGTAACTTTATCTCTTAAATGCATTTTGAAATAATTGTGAGATATTAATGTGCCATATCTTCTTTGAATTTGAAATTCTTGGATTGTTTGAATTGATGTTTTTATATATTTTGTAGAAATGAAACATATCTATGATTTTCTTATTAATACATTTGTATCGAATACAAAGCGGGTCGTATCACATAGTGTTACCAGGATAAGGTACCCAGCCTTATCCTTGTACTATAGACCTTTTAGGTTGTTACTTGAACACCAATCCCTGTATGTCCCCACATACTAGTTCAAGCTACATGTAAACAACCTTGGATCTTAGTTTATTGGATTTGGGTTATATTGTGCAATTCTAGACTTAATATGACAATAACAGTTTATTGCATAAACCTCAATAACACTTTATTGATACAAGTGTATAATTCGTTAATCATTCACTATCTACGAGTTTTAGGACATAAAACCCAACAATAGGGCTAATCATTAAAACTTGGAAAAGTTATAAAAATGATTAGAAACCGTCAACCTATAACAAAGAGTTGCATACAAACATAGGATCTTAGGTGAAATTGAATTAATTTTAAAATGTTTAAAATTAATTAGACCTAAGCTCATTATAATTTTAATAGGATTAGAGTTATTTTCTTACTTAGAATTAAAATAGTTTTAATGAACTAAGTTGGAAAAACATTACTATGGTTATAAGGGAACTCTCTCGGTGAAGTTCTGTCTAGGCTGAAGGTACTTAAGTTGACGGTTTACGGAACACCTCCTACCCGGGAACAGACCTGGAACCTGAATTGAATTAATCATAGTTTAATGTTAGCATGCAATGTCACTAGGTAATTAAAAGAGTTTAATTCACCAGGACACTAGAGTAAAGACCTATATATAAGAGTTTCCTTCCAAAAATAAAAAAGAAAGGCTTCCACAAGCCTCCTTAAACCCATCCCTTGGAGAATATCGATGGTTTACTAGTTGTTGTGTTCGTGAAAAGCAAAAGAATCAAGATCATGCTCTTGGTGGTTTTAAGAGAAGGTAAAGTTCGTGATTTTCCCAGTTGGAGAAACGGTGAAGCCCTCCTAAGTCATTGTTGGGTTCCTAGAGTGAGTAAAAATATAGTATATAAAAGGACTCTAGAACTCTGTGCAATTATACACAGTCCGCAGCAAGTAATAAGTATTATCAATCCAAGGCCTGAATTAGCTTCCACTTTATCTATTTTGTATAACTCTTTAATGGTTTCAAAGATGGTAAAAATGATTGGTTTTTATAAGAATAATGCTGAAGCAAAAGAAATGACAGAACAGAAAGTAAACGGATAGGCAGACAGATTAGAAACAGGCGCTGGTCAGGATTTAGTAATTGTTTTAAAAGATGCTCTAGCAATATTATTGATCATGCAAACTCTTGCAGTATTATTAGCGGATTCCTCCCGGAACTCCGGATTTTTTGGAATGTGTTTCAACCCCAATGAAGTACGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGACCGTAGTGTGA

mRNA sequence

ATGGATCCCGATGATCTAGATGAGCATGAACTAGTGGCCATATTCACAGCCTTCACCACAGCGCAAGCTCAGATTTTCCTACTCTTAGATCTATATATGAACGATTATAGAAGAATAGAACACCAATCACCCTACCTCCGACACCACATTAGGCATCTAACATTCTTCAGACTTATACACGAGTCTGACTTACGTTGTCGAGAGAGTACAAGGATGGACAGAAGATGTTTTGCCATACTTTGCACCTTGTTAAGAACAGTTGCCGGCTTAACTGGAACAGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTACACATCCTAGCCCACGACGTTAAGAACCGAGTAGTTCGTACACAGTTTGCTAGGTCTGGGGAGACAGTTTCTAGGCACTTCAACACCGTCCTTCATGGGGTGTTACGACTGCATGAAGTTCTTATAAAAAAACCTGAGCCAGTCACGACCTCTTGTACGGATCCGAGGTGGAAATGGTTTCAGGAGAATTATAATTCTCAAAATCAAGAAAAGTTTCACAGAGTAGAAAAAGAAAAATGTTATGGATCCTCCTTATGCTTGATGGCTCATTCGGATAATGATTATGGTGATGATAGTGATGAAAATGAGGTAAATCACAAATCTCGTACTTATGATGAACTTTATGATGCTTTTGAAAGTATGCATCAAGATTTAGAAAAACTTGGTTCAAAATATGTGAAATTATCAAAGAAGTATAAGACATTGTCTATTGAGAATAAATCTTTGATAAATGAAAATGCATGTTTGAAAAATGGAGCTAATAATGTTTTGTTGCATAATGAGGTTGATAGTGATTGTGATGAGAAAAATGTTAAGGTTAATAGAATTAAATTTCTTGAGAAAGAGAATGAGGATCTCAAATCTTTATCTTGTGAATTGAAACTTGAATTGAATGATTTGAGAAACAATAATGAAAAAATTGAATCTTTTTCATTAGAATTGAAAGATGAAATTGCTAGTTTGAAAAATAAAATTATTGATTTGGAAACTAGCAATACTTCTTTAGAGAATGATAAACTTGCCTTGATTGACAAGATTAAATTCATTGAATGTGATAGTCATGAGAAAAATGATCTTTTGCATGTGCTTAAAGAAAAAGAATTGTTAGCTAATAAAGAGCTTGAAATTGCAAAAGAGTCTATTAAGAAATTGACTATAGGTGCACAAAAATTAGATAAAATTATTGACATGGGTAAACCTTTTAATGACAAAAGGGGATTAGGCTATGTGGATGAAAATTCTTCATCTAATTCTAAGACTATTTTTGTTAAAGCTACTCCTAGTATGCCTAAAAATATTTTACCCAATGTGTCCAATTTTGTTGAATCTAAATTTGTGCCAAGGGATGAGAAATCTAGACCTATGCATGAAAAATCAAAATTTGTTCCTAAACATGTTGATGAAAAATTCAAATGTTTGCATATTGCTAAATTTGGGCCTAGACATAAAAAGGCTAAAAATGTGGATGTAAAATCAAAATTTGTGCCTAGATGTCATTTTTGTGGAGTTAAAGTCGAAGGTTTAATTCTTTTGCTCATAATCTTGCCCGTGTGGGCAAATCATGTTCGACGCCAGCCTTGTGGCTTCAGAACTATCCTCAATGGATGCAAAAGAATCAAGATCATGCTCTTGGTGGTTTTAAGAGAAGGTAAAGTTCGTGATTTTCCCAGTTGGAGAAACGGTGAAGCCCTCCTAAGTCATTGTTGGGTTCCTAGACGGATTCCTCCCGGAACTCCGGATTTTTTGGAATGTGTTTCAACCCCAATGAAGTACGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGACCGTAGTGTGA

Coding sequence (CDS)

ATGGATCCCGATGATCTAGATGAGCATGAACTAGTGGCCATATTCACAGCCTTCACCACAGCGCAAGCTCAGATTTTCCTACTCTTAGATCTATATATGAACGATTATAGAAGAATAGAACACCAATCACCCTACCTCCGACACCACATTAGGCATCTAACATTCTTCAGACTTATACACGAGTCTGACTTACGTTGTCGAGAGAGTACAAGGATGGACAGAAGATGTTTTGCCATACTTTGCACCTTGTTAAGAACAGTTGCCGGCTTAACTGGAACAGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTACACATCCTAGCCCACGACGTTAAGAACCGAGTAGTTCGTACACAGTTTGCTAGGTCTGGGGAGACAGTTTCTAGGCACTTCAACACCGTCCTTCATGGGGTGTTACGACTGCATGAAGTTCTTATAAAAAAACCTGAGCCAGTCACGACCTCTTGTACGGATCCGAGGTGGAAATGGTTTCAGGAGAATTATAATTCTCAAAATCAAGAAAAGTTTCACAGAGTAGAAAAAGAAAAATGTTATGGATCCTCCTTATGCTTGATGGCTCATTCGGATAATGATTATGGTGATGATAGTGATGAAAATGAGGTAAATCACAAATCTCGTACTTATGATGAACTTTATGATGCTTTTGAAAGTATGCATCAAGATTTAGAAAAACTTGGTTCAAAATATGTGAAATTATCAAAGAAGTATAAGACATTGTCTATTGAGAATAAATCTTTGATAAATGAAAATGCATGTTTGAAAAATGGAGCTAATAATGTTTTGTTGCATAATGAGGTTGATAGTGATTGTGATGAGAAAAATGTTAAGGTTAATAGAATTAAATTTCTTGAGAAAGAGAATGAGGATCTCAAATCTTTATCTTGTGAATTGAAACTTGAATTGAATGATTTGAGAAACAATAATGAAAAAATTGAATCTTTTTCATTAGAATTGAAAGATGAAATTGCTAGTTTGAAAAATAAAATTATTGATTTGGAAACTAGCAATACTTCTTTAGAGAATGATAAACTTGCCTTGATTGACAAGATTAAATTCATTGAATGTGATAGTCATGAGAAAAATGATCTTTTGCATGTGCTTAAAGAAAAAGAATTGTTAGCTAATAAAGAGCTTGAAATTGCAAAAGAGTCTATTAAGAAATTGACTATAGGTGCACAAAAATTAGATAAAATTATTGACATGGGTAAACCTTTTAATGACAAAAGGGGATTAGGCTATGTGGATGAAAATTCTTCATCTAATTCTAAGACTATTTTTGTTAAAGCTACTCCTAGTATGCCTAAAAATATTTTACCCAATGTGTCCAATTTTGTTGAATCTAAATTTGTGCCAAGGGATGAGAAATCTAGACCTATGCATGAAAAATCAAAATTTGTTCCTAAACATGTTGATGAAAAATTCAAATGTTTGCATATTGCTAAATTTGGGCCTAGACATAAAAAGGCTAAAAATGTGGATGTAAAATCAAAATTTGTGCCTAGATGTCATTTTTGTGGAGTTAAAGTCGAAGGTTTAATTCTTTTGCTCATAATCTTGCCCGTGTGGGCAAATCATGTTCGACGCCAGCCTTGTGGCTTCAGAACTATCCTCAATGGATGCAAAAGAATCAAGATCATGCTCTTGGTGGTTTTAAGAGAAGGTAAAGTTCGTGATTTTCCCAGTTGGAGAAACGGTGAAGCCCTCCTAAGTCATTGTTGGGTTCCTAGACGGATTCCTCCCGGAACTCCGGATTTTTTGGAATGTGTTTCAACCCCAATGAAGTACGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGACCGTAGTGTGA

Protein sequence

MDPDDLDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQENYNSQNQEKFHRVEKEKCYGSSLCLMAHSDNDYGDDSDENEVNHKSRTYDELYDAFESMHQDLEKLGSKYVKLSKKYKTLSIENKSLINENACLKNGANNVLLHNEVDSDCDEKNVKVNRIKFLEKENEDLKSLSCELKLELNDLRNNNEKIESFSLELKDEIASLKNKIIDLETSNTSLENDKLALIDKIKFIECDSHEKNDLLHVLKEKELLANKELEIAKESIKKLTIGAQKLDKIIDMGKPFNDKRGLGYVDENSSSNSKTIFVKATPSMPKNILPNVSNFVESKFVPRDEKSRPMHEKSKFVPKHVDEKFKCLHIAKFGPRHKKAKNVDVKSKFVPRCHFCGVKVEGLILLLIILPVWANHVRRQPCGFRTILNGCKRIKIMLLVVLREGKVRDFPSWRNGEALLSHCWVPRRIPPGTPDFLECVSTPMKYDRSSTRQLAIPSSVTGVHQYTMTVV
Homology
[Close]
BLAST of Spg028207 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-55
Identity = 110/162 (67.90%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLHE L+KKP+PV   CTD RWKWF+
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFE 162

[Close]
BLAST of Spg028207 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-55
Identity = 109/162 (67.28%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLHE L+KKP+PV   CTD RW+WF+
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of Spg028207 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-54
Identity = 108/162 (66.67%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLH+ L+KKP+PV   CTD RW+WF+
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of Spg028207 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-54
Identity = 108/162 (66.67%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLH+ L+KKP+PV   CTD RW+WF+
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of Spg028207 vs. NCBI nr
Match: KAA0065893.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-54
Identity = 108/162 (66.67%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFL+ILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLYILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLHE L+KKP+PV   CTD RW+WF+
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of Spg028207 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-55
Identity = 110/162 (67.90%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLHE L+KKP+PV   CTD RWKWF+
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFE 162

[Close]
BLAST of Spg028207 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.4e-55
Identity = 109/162 (67.28%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLHE L+KKP+PV   CTD RW+WF+
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of Spg028207 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.4e-55
Identity = 108/162 (66.67%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLH+ L+KKP+PV   CTD RW+WF+
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of Spg028207 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.4e-55
Identity = 108/162 (66.67%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLH+ L+KKP+PV   CTD RW+WF+
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of Spg028207 vs. ExPASy TrEMBL
Match: A0A5A7VCK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00700 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-54
Identity = 108/162 (66.67%), Postives = 129/162 (79.63%), Query Frame = 0 

Query: 6   LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLR 65
           +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMFL+ILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLYILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ 168
           GET+SRHFN VL  V+RLHE L+KKP+PV   CTD RW+WF+
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

[Close]
BLAST of Spg028207 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 7.2e-12
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = 0 

Query: 56  FRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKN 115
           +++++  + +C E+ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 116 RVVRTQFARSGETVSRHFNTVLHGVLRL 144
           R V+  F  SGET+SRHFN VL+ V+ +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAI 119

The following BLAST results are available for this feature:
BLAST of Spg028207 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048361.12.2e-5567.90retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035620.15.0e-5567.28retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon... [more]
KAA0046727.11.1e-5466.67retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon... [more]
KAA0034843.11.1e-5466.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065893.12.5e-5466.67retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg028207 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg028207 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U4761.1e-5567.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BDX02.4e-5567.28Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TXW15.4e-5566.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SWD85.4e-5566.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VCK91.2e-5466.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg028207 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41980.17.2e-1238.64CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 282..351
NoneNo IPR availableCOILSCoilCoilcoord: 238..258
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 37..167
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 37..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028207.1Spg028207.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding